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Ibikunle IA, Yang Y, Valdez NR, Rodriguez MA, Harvey JA, Sava Gallis DF, Sholl DS. Trends in Siting of Metals in Heterometallic Nd-Yb Metal-Organic Frameworks and Molecular Crystals. ACS APPLIED MATERIALS & INTERFACES 2022; 14:54349-54358. [PMID: 36399403 DOI: 10.1021/acsami.2c15638] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Several studies suggest that metal ordering within metal-organic frameworks (MOFs) is important for understanding how MOFs behave in relevant applications; however, these siting trends can be difficult to determine experimentally. To garner insight into the energetic driving forces that may lead to nonrandom ordering within heterometallic MOFs, we employ density functional theory (DFT) calculations on several bimetallic metal-organic crystals composed of Nd and Yb metal atoms. We also investigate the metal siting trends for a newly synthesized MOF. Our DFT-based energy of mixing results suggest that Nd will likely occupy sites with greater access to electronegative atoms and that local homometallic domains within a mixed-metal Nd-Yb system are favored. We also explore the use of less computationally extensive methods such as classical force fields and cluster expansion models to understand their feasibility for large system sizes. This study highlights the impact of metal ordering on the energetic stability of heterometallic MOFs and crystal structures.
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Affiliation(s)
- Ifayoyinsola A Ibikunle
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0100, United States
| | - Yuhan Yang
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0100, United States
| | - Nichole R Valdez
- Nanoscale Sciences Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Mark A Rodriguez
- Materials Characterization and Performance Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Jacob A Harvey
- Geochemistry Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Dorina F Sava Gallis
- Nanoscale Sciences Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - David S Sholl
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0100, United States
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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2
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Wang Y, Liu C. Evolution and deformability of inclusions in Al-killed steel with rare earth-alkali metals (Ca or Mg) combined treatment. J RARE EARTH 2022. [DOI: 10.1016/j.jre.2022.08.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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3
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Li RS, Lu X, Xin DQ, Hou SX, Luo JJ. Correlation effect on electronic and lattice properties of cerium oxides: Insights from density functional theory to dynamical mean-field theory. Chem Phys 2021. [DOI: 10.1016/j.chemphys.2021.111194] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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4
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Radionuclide incorporation in negative thermal expansion α-Zr(WO4)2: A density functional theory study. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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5
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Vogel DJ, Nenoff TM, Rimsza JM. Tuned Hydrogen Bonding in Rare-Earth Metal-Organic Frameworks for Design of Optical and Electronic Properties: An Exemplar Study of Y-2,5-Dihydroxyterephthalic Acid. ACS APPLIED MATERIALS & INTERFACES 2020; 12:4531-4539. [PMID: 31905286 DOI: 10.1021/acsami.9b20513] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Organic linkers in metal-organic framework (MOF) materials exhibit differences in hydrogen bonding (H-bonding), which can alter the geometric, electronic, and optical properties of the MOF. Density functional theory (DFT) simulations were performed on a photoluminescent Y-2,5-dihydroxyterephthalic acid (DOBDC) MOF with H-bonding concentrations between 0 and 100%; the H-bonds were located on both bidentate- and monodentate-bound DOBDC linkers. At 0% H-bond concentration in the framework, the lattice parameters contracted, the density increased, and simulated X-ray diffraction patterns shifted. Comparison with published experimental data identified that Y-DOBDC MOF structures must have a degree of H-bond concentration. The concentration of H-bonds in the system shifted the calculated band gap energy from 2.25 eV at 100% to 3.00 eV at 0%. The band gap energies also indicate a distinction of H-bonds formed on bidentate-coordinated linkers compared to those on monodentate linkers. Additionally, when the calculated optical spectra are compared with experimental data, the ligand-to-ligand charge-transfer luminescence in Y-DOBDC MOFs is expected to result from an average of 20-40% H-bonding with at least 50% of the bidentate linkers containing H-bonding. Therefore, the type of H-bonding within the DOBDC linker determines the electronic structure and the optical absorption of the MOF framework structure. Tuning of the H-bonding in rare-earth MOFs provides an opportunity to control the specific optical and adsorption properties of the MOF framework on the basis of reactions between the linker and the environment.
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Sava Gallis DF, Vogel DJ, Vincent GA, Rimsza JM, Nenoff TM. NO x Adsorption and Optical Detection in Rare Earth Metal-Organic Frameworks. ACS APPLIED MATERIALS & INTERFACES 2019; 11:43270-43277. [PMID: 31657891 DOI: 10.1021/acsami.9b16470] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Acid gases (e.g., NOx and SOx), commonly found in complex chemical and petrochemical streams, require material development for their selective adsorption and removal. Here, we report the NOx adsorption properties in a family of rare earth (RE) metal-organic frameworks (MOFs) materials. Fundamental understanding of the structure-property relationship of NOx adsorption in the RE-DOBDC materials platform was sought via a combined experimental and molecular modeling study. No structural change was noted following humid NOx exposure. Density functional theory (DFT) simulations indicated that H2O has a stronger affinity to bind with the metal center than NO2, while NO2 preferentially binds with the DOBDC ligands. Further modeling results indicate no change in binding energy across the RE elements investigated. Also, stabilization of the NO2 and H2O molecules following adsorption was noted, predicted to be due to hydrogen bonding between the framework ligands and the molecules and nanoconfinement within the MOF structure. This interaction also caused distinct changes in emission spectra, identified experimentally. Calculations indicated that this is due to the adsorption of NO2 molecules onto the DOBDC ligand altering the electronic transitions and the resulting photoluminescent properties, a feature that has potential applications in future sensing technologies.
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Affiliation(s)
- Dorina F Sava Gallis
- Nanoscale Sciences Department , Sandia National Laboratories , Albuquerque , New Mexico 87185 , United States
| | - Dayton J Vogel
- Nanoscale Sciences Department , Sandia National Laboratories , Albuquerque , New Mexico 87185 , United States
| | - Grace A Vincent
- Nanoscale Sciences Department , Sandia National Laboratories , Albuquerque , New Mexico 87185 , United States
| | - Jessica M Rimsza
- Geochemistry Department , Sandia National Laboratories , Albuquerque , New Mexico 87185 , United States
| | - Tina M Nenoff
- Material, Physical, and Chemical Sciences Center , Sandia National Laboratories , Albuquerque , New Mexico 87185 , United States
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Vogel DJ, Sava Gallis DF, Nenoff TM, Rimsza JM. Structure and electronic properties of rare earth DOBDC metal-organic-frameworks. Phys Chem Chem Phys 2019; 21:23085-23093. [PMID: 31603163 DOI: 10.1039/c9cp04038b] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Here, we apply density functional theory (DFT) to investigate rare-earth metal organic frameworks (RE-MOFs), RE12(μ3-OH)16(C8O6H4)8(C8O6H5)4 (RE = Y, Eu, Tb, Yb), and characterize the level of theory needed to accurately predict structural and electronic properties in MOF materials with 4f-electrons. A two-step calculation approach of geometry optimization with spin-restricted DFT and large core potential (LCPs), and detailed electronic structures with spin-unrestricted DFT with a full valence potential + Hubbard U correction is investigated. Spin-restricted DFT with LCPs resulted in good agreement between experimental lattice parameters and optimized geometries, while a full valence potential is necessary for accurate representation of the electronic structure. The electronic structure of Eu-DOBDC MOF indicated a strong dependence on the treatment of highly localized 4f-electrons and spin polarization, as well as variation within a range of Hubbard corrections (U = 1-9 eV). For Hubbard corrected spin-unrestricted calculations, a U value of 1-4 eV maintains the non-metallic character of the band gap with slight deviations in f-orbital energetics. When compared with experimentally reported results, the importance of the full valence calculation and the Hubbard correction in correctly predicting the electronic structure is highlighted.
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Affiliation(s)
- Dayton J Vogel
- Nanoscale Sciences Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA
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8
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Shen Y, Yin K, Xiao Z. Theoretical insight into the single-atom catalytic mechanism of CeO 2-supported Ag catalysts in CO oxidation. Phys Chem Chem Phys 2019; 21:20346-20353. [PMID: 31497823 DOI: 10.1039/c9cp03201k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Revealing the accurate active center structure and the functional mechanism of CeO2-supported Ag catalysts during catalysis is extremely important for their accurate synthesis. In this work, a series of AgnCeO2 (n = 1, 2, 3, 4 and 10) model catalysts was constructed, and a DFT investigation of the reaction mechanism of CO oxidation, as a probe reaction on those catalysts, was carried out. It was found that the entire catalytic reaction was completed coordinately by Ag, lattice O and O vacancies, which could be considered as the active centers. Noticeably, the mobility of Ag atoms played an important role in the reaction process, leading to the observation of a single-atom catalytic mechanism, wherein a series of single Ag atomic species was formed during the reaction, which was beneficial to CO oxidation. With the completion of some elementary reactions, the single Ag formed during the migration of CO-Ag could return to the Ag cluster again. As expected, the single-AgCeO2 catalyst exhibited extremely high activity due to the absence of the binding effect of Ag-Ag. Nevertheless, the AgnCeO2 (n > 1) catalysts showed similar catalytic activity, which was slightly worse than that of single AgCeO2, indicating that the size effect of the Ag cluster was not obvious. These results provide the theoretical basis for further understanding the functional mechanism of the AgnCeO2 catalyst and are helpful for designing various catalysts with tailored functionalities.
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Affiliation(s)
- Yongli Shen
- Tianjin Key Laboratory of Advanced Functional Porous Materials, Institute for New Energy Materials & Low-Carbon Technologies, School of Materials Science and Engineering, Tianjin University of Technology, Tianjin 300384, China.
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Morrison TD, Wood ES, Weck PF, Kim E, Woo SO, Nelson AT, Naugle DG. A comprehensive assessment of the low-temperature thermal properties and thermodynamic functions of CeO 2. J Chem Phys 2019; 151:044202. [PMID: 31370517 DOI: 10.1063/1.5110178] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Reported is an experimental and computational investigation of the low temperature heat capacity, thermodynamic functions, and thermal conductivity of stoichiometric, polycrystalline CeO2. The experimentally measured heat capacity at T < 15 K provides an important correction to the historically accepted experimental values, and the low temperature thermal conductivity serves as the most comprehensive data set at T < 400 K available. Below 10 K, the heat capacity is observed to obey the Debye T3 law, with a Debye temperature of ΘD = 455 K. The entropy, enthalpy, and Gibbs free energy functions are obtained from the experimental heat capacity and compared with predictions from Hubbard-corrected density functional perturbation theory calculations using the Perdew, Burke, and Ernzerhof parameterization revised for solids. The thermal conductivity is determined using the Maldonado continuous measurement technique, along with laser flash analysis, and analyzed according to the Klemens-Callaway model.
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Affiliation(s)
- Tyler D Morrison
- Department of Physics and Astronomy, Texas A&M University, College Station, Texas 77843, USA
| | - Elizabeth Sooby Wood
- Department of Physics and Astronomy, University of Texas at San Antonio, San Antonio, Texas 78249-1644, USA
| | - Phillippe F Weck
- Sandia National Laboratories, P.O. Box 5800, Albuquerque, New Mexico 87123, USA
| | - Eunja Kim
- Department of Physics and Astronomy, University of Nevada-Las Vegas, Las Vegas, Nevada 89154, USA
| | - Sung Oh Woo
- Department of Physics and Astronomy, Texas A&M University, College Station, Texas 77843, USA
| | - Andrew T Nelson
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Donald G Naugle
- Department of Physics and Astronomy, Texas A&M University, College Station, Texas 77843, USA
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Mattsson S, Paulus B. Density Functional Theory Calculations of Structural, Electronic, and Magnetic Properties of the 3d Metal Trifluorides MF 3 (M = Ti-Ni) in the Solid State. J Comput Chem 2019; 40:1190-1197. [PMID: 30697774 DOI: 10.1002/jcc.25777] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Revised: 12/19/2018] [Accepted: 12/22/2018] [Indexed: 11/05/2022]
Abstract
We employ density functional theory with Hubbard U correction or hybrid functionals to study the series of magnetic 3d metal trifluorides MF3 (M = Ti-Ni). Experimental lattice parameters are reproduced with an error margin of 0.5%-4.3%. Cooperative Jahn-Teller distortions are reproduced for MnF3 , but also found in TiF3 and CoF3 at smaller levels compared to MnF3 . Trends in electronic structure with respect to positions of the d bands are linked to the magnetic properties where M = Ti-Cr are weak magnetic Mott-Hubbard insulators, M = Fe-Ni are strong magnetic charge-transfer insulators and MnF3 falls in between. Our work contributes to the characterization of the relatively unknown NiF3 , since FeF3 and CoF3 have similar electronic and magnetic properties. However, NiF3 does not show a Jahn-Teller distortion as present in CoF3 . © 2019 Wiley Periodicals, Inc.
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Affiliation(s)
- Stefan Mattsson
- Institute of Chemistry and Biochemistry, Physical and Theoretical Chemistry, Freie Universität Berlin, Takustr. 3, 14195, Berlin, Germany
| | - Beate Paulus
- Institute of Chemistry and Biochemistry, Physical and Theoretical Chemistry, Freie Universität Berlin, Takustr. 3, 14195, Berlin, Germany
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11
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Weck PF, Kim E, Gordon ME, Greathouse JA, Dingreville R, Bryan CR. First-Principles Structural, Mechanical, and Thermodynamic Calculations of the Negative Thermal Expansion Compound Zr 2(WO 4)(PO 4) 2. ACS OMEGA 2018; 3:15780-15788. [PMID: 31458228 PMCID: PMC6644104 DOI: 10.1021/acsomega.8b02456] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 11/06/2018] [Indexed: 06/10/2023]
Abstract
The negative thermal expansion (NTE) material Zr2(WO4)(PO4)2 has been investigated for the first time within the framework of the density functional perturbation theory (DFPT). The structural, mechanical, and thermodynamic properties of this material have been predicted using the Perdew, Burke and Ernzerhof for solid (PBEsol) exchange-correlation functional, which showed superior accuracy over standard functionals in previous computational studies of the NTE material α-ZrW2O8. The bulk modulus calculated for Zr2(WO4)(PO4)2 using the Vinet equation of state at room temperature is K 0 = 63.6 GPa, which is in close agreement with the experimental estimate of 61.3(8) at T = 296 K. The computed mean linear coefficient of thermal expansion is -3.1 × 10-6 K-1 in the temperature range ∼0-70 K, in line with the X-ray diffraction measurements. The mean Grüneisen parameter controlling the thermal expansion of Zr2(WO4)(PO4)2 is negative below 205 K, with a minimum of -2.1 at 10 K. The calculated standard molar heat capacity and entropy are C P 0 = 287.6 and S 0 = 321.9 J·mol-1·K-1, respectively. The results reported in this study demonstrate the accuracy of DFPT/PBEsol for assessing or predicting the relationship between structural and thermomechanical properties of NTE materials.
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Affiliation(s)
- Philippe F. Weck
- Sandia
National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Eunja Kim
- Department
of Physics and Astronomy, University of
Nevada Las Vegas, 4505 Maryland Parkway, Las Vegas, Nevada 89124, United
States
| | - Margaret E. Gordon
- Sandia
National Laboratories, Albuquerque, New Mexico 87185, United States
| | | | - Rémi Dingreville
- Sandia
National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Charles R. Bryan
- Sandia
National Laboratories, Albuquerque, New Mexico 87185, United States
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12
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Weck PF, Kim E, Greathouse JA, Gordon ME, Bryan CR. Assessing exchange-correlation functionals for elasticity and thermodynamics of α-ZrW2O8: A density functional perturbation theory study. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.03.025] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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13
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Model representations of kerogen structures: An insight from density functional theory calculations and spectroscopic measurements. Sci Rep 2017; 7:7068. [PMID: 28765559 PMCID: PMC5539101 DOI: 10.1038/s41598-017-07310-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2017] [Accepted: 06/26/2017] [Indexed: 11/08/2022] Open
Abstract
Molecular structures of kerogen control hydrocarbon production in unconventional reservoirs. Significant progress has been made in developing model representations of various kerogen structures. These models have been widely used for the prediction of gas adsorption and migration in shale matrix. However, using density functional perturbation theory (DFPT) calculations and vibrational spectroscopic measurements, we here show that a large gap may still remain between the existing model representations and actual kerogen structures, therefore calling for new model development. Using DFPT, we calculated Fourier transform infrared (FTIR) spectra for six most widely used kerogen structure models. The computed spectra were then systematically compared to the FTIR absorption spectra collected for kerogen samples isolated from Mancos, Woodford and Marcellus formations representing a wide range of kerogen origin and maturation conditions. Limited agreement between the model predictions and the measurements highlights that the existing kerogen models may still miss some key features in structural representation. A combination of DFPT calculations with spectroscopic measurements may provide a useful diagnostic tool for assessing the adequacy of a proposed structural model as well as for future model development. This approach may eventually help develop comprehensive infrared (IR)-fingerprints for tracing kerogen evolution.
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