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Fosnacht KG, Pluth MD. Activity-Based Fluorescent Probes for Hydrogen Sulfide and Related Reactive Sulfur Species. Chem Rev 2024; 124:4124-4257. [PMID: 38512066 PMCID: PMC11141071 DOI: 10.1021/acs.chemrev.3c00683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
Abstract
Hydrogen sulfide (H2S) is not only a well-established toxic gas but also an important small molecule bioregulator in all kingdoms of life. In contemporary biology, H2S is often classified as a "gasotransmitter," meaning that it is an endogenously produced membrane permeable gas that carries out essential cellular processes. Fluorescent probes for H2S and related reactive sulfur species (RSS) detection provide an important cornerstone for investigating the multifaceted roles of these important small molecules in complex biological systems. A now common approach to develop such tools is to develop "activity-based probes" that couple a specific H2S-mediated chemical reaction to a fluorescent output. This Review covers the different types of such probes and also highlights the chemical mechanisms by which each probe type is activated by specific RSS. Common examples include reduction of oxidized nitrogen motifs, disulfide exchange, electrophilic reactions, metal precipitation, and metal coordination. In addition, we also outline complementary activity-based probes for imaging reductant-labile and sulfane sulfur species, including persulfides and polysulfides. For probes highlighted in this Review, we focus on small molecule systems with demonstrated compatibility in cellular systems or related applications. Building from breadth of reported activity-based strategies and application, we also highlight key unmet challenges and future opportunities for advancing activity-based probes for H2S and related RSS.
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Affiliation(s)
- Kaylin G. Fosnacht
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, United States
| | - Michael D. Pluth
- Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, United States
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2
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Watson MA, Johnston RC, Bochevarov A. Comment on the Definition and Labeling of p K50. J Chem Inf Model 2023; 63:5396-5399. [PMID: 37603789 DOI: 10.1021/acs.jcim.3c01210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/23/2023]
Abstract
We propose a more rigorous definition for the recently introduced concept of pK50. The value of pK50 should be associated not with a "functional group", as originally postulated, but instead with an atom. The proposed clarification is meant to improve the interpretation and labeling of pK50.
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Affiliation(s)
- Mark A Watson
- Schrödinger, Inc., 1540 Broadway, Floor 24, New York, New York 10036, United States
| | - Ryne C Johnston
- Schrödinger, Inc., 101 SW Main St, Suite 1300, Portland, Oregon 97204, United States
| | - Art Bochevarov
- Schrödinger, Inc., 1540 Broadway, Floor 24, New York, New York 10036, United States
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3
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Huang X, Lan N, Jiang F, He H, Zhong J. Synthesis of a Near‐Infrared Fluorescence Turn‐On Probe Based on Dicyanoisophorone for HS
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‐Detection in Cancer Cells and Zebrafish in Pure Water Media. ChemistrySelect 2022. [DOI: 10.1002/slct.202201070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Xuelong Huang
- Key Laboratory of Prevention and Treatment of Cardiovascular and Cerebrovascular Diseases Ministry of Education Key Laboratory of Biomaterials and Biofabrication in Tissue Engineering of Jiangxi Province College of Medical Information Engineering Gannan Medical University Ganzhou 341000 People's Republic of China
| | - Ning Lan
- Key Laboratory of Prevention and Treatment of Cardiovascular and Cerebrovascular Diseases Ministry of Education Key Laboratory of Biomaterials and Biofabrication in Tissue Engineering of Jiangxi Province College of Medical Information Engineering Gannan Medical University Ganzhou 341000 People's Republic of China
| | - Fan Jiang
- Key Laboratory of Prevention and Treatment of Cardiovascular and Cerebrovascular Diseases Ministry of Education Key Laboratory of Biomaterials and Biofabrication in Tissue Engineering of Jiangxi Province College of Medical Information Engineering Gannan Medical University Ganzhou 341000 People's Republic of China
| | - Haifeng He
- Jiangxi Engineering Laboratory of Waterborne Coating School of Chemistry and Chemical Engineering Jiangxi Science and Technology Normal University Nanchang 330013 People's Republic of China
| | - Jiang Zhong
- Jiangxi Engineering Laboratory of Waterborne Coating School of Chemistry and Chemical Engineering Jiangxi Science and Technology Normal University Nanchang 330013 People's Republic of China
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Theoretical Investigation on the ESIPT Process and Detection Mechanism for Dual-Proton Type Fluorescent Probe. Int J Mol Sci 2022; 23:ijms23042132. [PMID: 35216247 PMCID: PMC8876953 DOI: 10.3390/ijms23042132] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 02/07/2022] [Accepted: 02/10/2022] [Indexed: 02/06/2023] Open
Abstract
Recently, a new fluorescent probe AE-Phoswas reported to detect the activity of alkaline phosphatases (ALP) in different living cell lines. Here, we present an in-depth computational analysis of the mechanism and source of the fluorescence of the AE-Phos probe. There is an intermediate product (AE-OH-Phos) in the experiment as well as a different configuration of products that may emit fluorescence. It is essential to investigate the origin of fluorescence and the detection mechanism of the probe, which could help us eliminate the interference of other substances (including an intermediate product and possible isomers) on fluorescence during the experiment. According to the change of geometric parameters and Infrared spectra, we deduce that the dual intramolecular hydrogen bonds of salicylaldehyde azine (SA) were enhanced at the excited state, while AE-OH-Phos was attenuated. Considering the complex ESIPT behavior of the dual proton-type probe, the potential energy surfaces were further discussed. It can be concluded that the single proton transfer structure of SA (SA-SPT) is the most stable form. Both the concerted double proton transfer process and stepwise single proton transfer process of SA were forbidden. The fluorescence for SA was 438 nm, while that of SA-SPT was 521 nm, which agrees with the experimentally measured fluorescence wavelength (536 nm). The conclusion that single proton transfer occurs in SA is once again verified. In addition, the distribution of electron-hole and relative index was analyzed to investigate the intrinsic mechanism for the fluorescence quenching of the probe and the intermediate product. The identification of the origin of fluorescence sheds light on the design and use of dual-proton type fluorescent probes in the future.
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Wang D, Li H, Sun S, Xu Y. Cyanide Boosting Copper Catalysis: A Mild Approach to Fluorescent Benzazole Derivatives from Nonemissive Schiff Bases in Biological Media. Org Lett 2020; 22:3361-3366. [PMID: 32275161 DOI: 10.1021/acs.orglett.0c00784] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
An application of nucleophilic cyclization and oxidation of nonemissive Schiff bases via cyanide boosting copper catalysis to synthesize fluorescent benzazole derivatives in high conversion yield is disclosed. This approach is highlighted by broad substrate scope, fast reaction time, and mild conditions and can efficiently proceed in living cells or Arabidopsis root tissues. Furthermore, this methodology can be applied for selective detection of Cu2+ and CN-.
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Affiliation(s)
- Dejia Wang
- Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China
| | - Hongjuan Li
- Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China
| | - Shiguo Sun
- Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China
| | - Yongqian Xu
- Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China
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6
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Liu Z, Wang Q, Wang H, Lan Y, Dong S. A quaternary ammonium modified fluorescent probe for hydrogen sulfide detection in living cells. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2019.112213] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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7
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Zhang Y, Ma Y, Wang Z, Zhang X, Chen X, Hou S, Wang H. A novel colorimetric and far-red emission ratiometric fluorescent probe for the highly selective and ultrafast detection of hypochlorite in water and its application in bioimaging. Analyst 2020; 145:939-945. [DOI: 10.1039/c9an02034a] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Hypochlorous acid (HOCl)/hypochlorite (OCl−), an important reactive oxygen species, plays a number of important roles in various physiological processes.
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Affiliation(s)
- Yuanyuan Zhang
- College of Science
- China Agricultural University
- Beijing
- P.R. China
| | - Yufan Ma
- State Key Laboratory of Chemical Resource Engineering College of Chemistry
- Beijing University of Chemical Technology
- Beijing
- China
| | - Zhuo Wang
- State Key Laboratory of Chemical Resource Engineering College of Chemistry
- Beijing University of Chemical Technology
- Beijing
- China
| | - Xueyan Zhang
- College of Science
- China Agricultural University
- Beijing
- P.R. China
| | - Xin Chen
- College of Science
- China Agricultural University
- Beijing
- P.R. China
| | - Shicong Hou
- College of Science
- China Agricultural University
- Beijing
- P.R. China
| | - Hongmei Wang
- College of Science
- China Agricultural University
- Beijing
- P.R. China
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8
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Mohan M, Satyanarayan M, Trivedi DR. Exploring the possibilities of double proton transfer in hydrazides: A theoretical approach. J PHYS ORG CHEM 2019. [DOI: 10.1002/poc.4003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Makesh Mohan
- Optoelectronics Laboratory, Department of PhysicsNational Institute of Technology Karnataka (NITK) Surathkal Mangalore India
| | - M.N. Satyanarayan
- Optoelectronics Laboratory, Department of PhysicsNational Institute of Technology Karnataka (NITK) Surathkal Mangalore India
| | - Darshak R. Trivedi
- Supramolecular Chemistry Laboratory, Department of ChemistryNational Institute of Technology Karnataka (NITK) Surathkal Mangalore India
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9
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Solid state structure and photophysical properties of monoanionic 2-(2′-hydroxyphenyl)benzimidazole as an anionic core in rhenium complex. J Organomet Chem 2019. [DOI: 10.1016/j.jorganchem.2019.03.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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10
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Triggered emission for rapid detection of hydrogen sulfide chaperoned by large Stokes shift. J Photochem Photobiol A Chem 2019. [DOI: 10.1016/j.jphotochem.2018.11.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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11
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Yang L, Su Y, Sha Z, Geng Y, Qi F, Song X. A red-emitting fluorescent probe for hydrogen sulfide in living cells with a large Stokes shift. Org Biomol Chem 2018; 16:1150-1156. [DOI: 10.1039/c7ob02641b] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
An azido-based fluorescent probe was developed for the sensitive and selective detection of H2S with a red emission and a large Stokes shift. The probe was successfully applied to detect H2S both in aqueous solution and in living cells.
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Affiliation(s)
- Lei Yang
- College of Chemistry & Chemical Engineering
- Central South University
- Changsha
- P. R. China
| | - Yuanan Su
- College of Chemistry & Chemical Engineering
- Central South University
- Changsha
- P. R. China
| | - Zhankui Sha
- Faculty of Materials Science and Chemistry
- China University of Geosciences
- Wuhan
- P.R. China 430074
| | - Yani Geng
- College of Chemistry & Chemical Engineering
- Central South University
- Changsha
- P. R. China
| | - Fengpei Qi
- College of Chemistry & Chemical Engineering
- Central South University
- Changsha
- P. R. China
- Department of Chemistry and Environmental Engineering
| | - Xiangzhi Song
- College of Chemistry & Chemical Engineering
- Central South University
- Changsha
- P. R. China
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12
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Chansen W, Salaeh R, Prommin C, Kerdpol K, Daengngern R, Kungwan N. Theoretical study on influence of geometry controlling over the excited-state intramolecular proton transfer of 10-hydroxybenzo[ h ]quinoline and its derivatives. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2017.05.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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13
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Huo F, Zhang Y, Ning P, Meng X, Yin C. A novel isophorone-based red-emitting fluorescent probe for selective detection of sulfide anions in water for in vivo imaging. J Mater Chem B 2017; 5:2798-2803. [DOI: 10.1039/c7tb00299h] [Citation(s) in RCA: 76] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
A new red-emitting fluorescent probe for detection of sulfide anions in living cells (MCF-7 cells) and zebrafish was developed.
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Affiliation(s)
- Fangjun Huo
- Research Institute of Applied Chemistry
- Shanxi University
- Taiyuan
- China
- School of Chemistry and Chemical Engineering
| | - Yaqiong Zhang
- Research Institute of Applied Chemistry
- Shanxi University
- Taiyuan
- China
- School of Chemistry and Chemical Engineering
| | - Peng Ning
- Department of Chemistry and Collaborative Innovation Center of Chemistry for Energy Materials
- Anhui University
- China
| | - Xiangming Meng
- Department of Chemistry and Collaborative Innovation Center of Chemistry for Energy Materials
- Anhui University
- China
| | - Caixia Yin
- Institute of Molecular Science
- Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education
- Key Laboratory of Materials for Energy Conversion and Storage of Shanxi Province
- Shanxi University
- Taiyuan
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14
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Chen B, Huang J, Geng H, Xuan L, Xu T, Li X, Han Y. A new ESIPT-based fluorescent probe for highly selective and sensitive detection of hydrogen sulfide and its application in live-cell imaging. NEW J CHEM 2017. [DOI: 10.1039/c6nj03355e] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new ESIPT-based fluorescent probe for the sensitive detection of hydrogen sulfide has been reasonably designed and developed.
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Affiliation(s)
- Bo Chen
- Department of Chemistry
- The Key Laboratory of Advanced Textile Materials and Manufacturing Technology
- Zhejiang Sci-Tech University
- Hangzhou
- China
| | - Jing Huang
- Department of Chemistry
- The Key Laboratory of Advanced Textile Materials and Manufacturing Technology
- Zhejiang Sci-Tech University
- Hangzhou
- China
| | - Huiqing Geng
- Department of Chemistry
- The Key Laboratory of Advanced Textile Materials and Manufacturing Technology
- Zhejiang Sci-Tech University
- Hangzhou
- China
| | - Lingli Xuan
- Department of Chemistry
- The Key Laboratory of Advanced Textile Materials and Manufacturing Technology
- Zhejiang Sci-Tech University
- Hangzhou
- China
| | - Tengfei Xu
- Department of Chemistry
- The Key Laboratory of Advanced Textile Materials and Manufacturing Technology
- Zhejiang Sci-Tech University
- Hangzhou
- China
| | - Xin Li
- ZJU-ENS Joint Laboratory of Medicinal Chemistry
- College of Pharmaceutical Sciences
- Zhejiang University
- Hangzhou
- China
| | - Yifeng Han
- Department of Chemistry
- The Key Laboratory of Advanced Textile Materials and Manufacturing Technology
- Zhejiang Sci-Tech University
- Hangzhou
- China
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