Flexible imidazolium macrocycles: building blocks for anion-induced self-assembly

Ratiometric orange fluorescent and colorimetric highly sensitive imidazolium-bearing naphthoquinolinedione-based probes for CN- sensing in aqueous solutions and bio-samples

The widespread use of cyanide (CN^-) in industry results in contamination of various effluents such as drain, lake, and tap water, an imminent danger to the environment and human health. We prepared naphthoquinolinedione (cyclized; 1-5) and anthracenedione (un-cyclized) probes (6-7) for selective detection of CN^-. The addition of CN^- to the probe solutions (1-5) resulted in a color change from pale green to orange under 365 nm illumination. The nucleophilic addition of CN^- to C2 of the imidazolium ring of the probes is responsible for selective CN^- detection. Among all probes, 1 gave the lowest fluorescence-based LOD of 0.13 pM. In contrast, the un-cyclized probes (6 and 7) were substantially inferior to the cyclized counterparts (1 and 2, respectively) for detecting a trace amount of CN^-. The notably low LOD displayed by probe 1 was maintained in the detection of CN^- in real food samples, human fluids, and human brain cells. This is the first report studying imidazolium-bearing naphthoquinolinedione-based probes for CN^- sensing in 100% water.

Smart genetically-encoded biosensors for the chemical monitoring of living systems

Genetically-encoded biosensors provide the all-optical and non-invasive visualization of dynamic biochemical events within living systems, which has allowed the discovery of profound new insights. Twenty-five years of biosensor development has steadily improved their performance and has provided us with an ever increasing biosensor repertoire. In this feature article, we present recent advances made in biosensor development and provide a perspective on the future direction of the field.

Three modes of interactions between anions and phenolic macrocycles: a comparative study

Macrocyclic polyphenolic compounds such as resorcin[4]arenes can be considered as multidentate anion receptors. In the current work, we combine new experimental data and reports from the previous literature (solution data and deposited crystal structures from the CCDC) to systematically analyze binding motifs between resorcin[4]arene derivatives and anions, determine the role of supporting interactions from CH donors, ion pairing and estimate their relative strength. We have found that in medium polarity solvents (THF) anion binding is a main driving force for the formation of complexes between resorcinarenes and Alk₄NX salts. Three binding modes have been detected using ¹H NMR and DOSY, depending on the type of additional interactions. Mode I was observed for upper-rim unsubstituted resorcinarenes, which use OH groups and aromatic CH from the upper rim as hydrogen bond donors to form multidentate and multivalent binding sites at the upper rim. Mode II was observed for upper-rim halogenated resorcinarenes (tetrabromo- and tetraiodo-derivatives), which use OH groups and aliphatic CH atoms from the bridges to support the chelation of anions between aromatic units. This binding mode is also multidentate and multivalent, but weaker and more anion-selective than mode I (works effectively for chlorides but not for bromides). For O-substituted derivatives, mode III is observed, with anions bound in a nest formed by aromatic CH atoms in the lower rim (multidentate but monovalent binding). The relative strength of these three binding modes, their solvent-dependence, and emergence in the crystal structures (CCDC) have been evaluated.

Preparation of tricationic tris(pyridylpalladium(II)) metallacyclophane as an anion receptor

A tricationic tris(pyridylpalladium(II)) metallacyclophane was prepared from 3,5-dibromopyridine by a successive treatment with tetrakis(triphenylphosphine)palladium(0), diphosphine, and silver salt. Single-crystal X-ray diffraction analysis revealed that the metallacyclophane incorporated one of three counter anions into its hole-shaped cavity to form multidentate C-H⋯anion interactions. Solution-phase ¹H NMR experiments in DMSO-d₆ indicated that the metallacyclophane exhibited selective binding behavior toward nitrate, tetrafluoroborate, p-toluenesulfonate, perchlorate, and hydrogen sulfate ions, whereas the hexafluoroantimonate ion exhibited only weak interaction toward the metallacyclophane. This anion recognition behavior was further demonstrated by an extraction experiment of water-soluble sulfonate dyes.

Supramolecular Adhesive Hydrogels for Tissue Engineering Applications

Tissue engineering is a promising and revolutionary strategy to treat patients who suffer the loss or failure of an organ or tissue, with the aim to restore the dysfunctional tissues and enhance life expectancy. Supramolecular adhesive hydrogels are emerging as appealing materials for tissue engineering applications owing to their favorable attributes such as tailorable structure, inherent flexibility, excellent biocompatibility, near-physiological environment, dynamic mechanical strength, and particularly attractive self-adhesiveness. In this review, the key design principles and various supramolecular strategies to construct adhesive hydrogels are comprehensively summarized. Thereafter, the recent research progress regarding their tissue engineering applications, including primarily dermal tissue repair, muscle tissue repair, bone tissue repair, neural tissue repair, vascular tissue repair, oral tissue repair, corneal tissue repair, cardiac tissue repair, fetal membrane repair, hepatic tissue repair, and gastric tissue repair, is systematically highlighted. Finally, the scientific challenges and the remaining opportunities are underlined to show a full picture of the supramolecular adhesive hydrogels. This review is expected to offer comparative views and critical insights to inspire more advanced studies on supramolecular adhesive hydrogels and pave the way for different fields even beyond tissue engineering applications.

Synthesis and aqueous anion recognition of an imidazolium-based nonacationic cup

An imidazolium-based nonacationic cup (1·9X; X = PF₆^- or Cl^-) was synthesized via step-by-step S_N2 reactions without using any template. The water-soluble 1·9Cl^- as a molecular container can encapsulate anionic nucleoside triphosphate and dinucleotide molecules (e.g., ATP and NADH) inside its cavity through hydrogen bonds and electrostatic interactions in aqueous solution.

Synergistic regulation of nonbinary molecular switches by protonation and light

We report a molecular switching ensemble whose states may be regulated in synergistic fashion by both protonation and photoirradiation. This allows hierarchical control in both a kinetic and thermodynamic sense. These pseudorotaxane-based molecular devices exploit the so-called Texas-sized molecular box (cyclo[2]-(2,6-di(1H-imidazol-1-yl)pyridine)[2](1,4-dimethylenebenzene); 1⁴⁺, studied as its tetrakis-PF₆ ^- salt) as the wheel component. Anions of azobenzene-4,4'-dicarboxylic acid (2H⁺•2) or 4,4'-stilbenedicarboxylic acid (2H⁺•3) serve as the threading rod elements. The various forms of 2 and 3 (neutral, monoprotonated, and diprotonated) interact differently with 1⁴⁺, as do the photoinduced cis or trans forms of these classic photoactive guests. The net result is a multimodal molecular switch that can be regulated in synergistic fashion through protonation/deprotonation and photoirradiation. The degree of guest protonation is the dominating control factor, with light acting as a secondary regulatory stimulus. The present dual input strategy provides a complement to more traditional orthogonal stimulus-based approaches to molecular switching and allows for the creation of nonbinary stimulus-responsive functional materials.

Macrocyclic host molecules with aromatic building blocks: the state of the art and progress

Macrocyclic host molecules play the central role in host-guest chemistry and supramolecular chemistry. The highly structural symmetry of macrocyclic host molecules can meet people's pursuit of aesthetics in molecular design, and generally means a balance of design, synthesis, properties and applications. For macrocyclic host molecules with highly symmetrical structures, building blocks, which could be described as repeat units as well, are the most fundamental elements for molecular design. The structural features and recognition ability of macrocyclic host molecules are determined by the building blocks and their connection patterns. Using different building blocks, different macrocyclic host molecules could be designed and synthesized. With decades of developments of host-guest chemistry and supramolecular chemistry, diverse macrocyclic host molecules with different building blocks have been designed and synthesized. Aromatic building blocks are a big family among the various building blocks used in constructing macrocyclic host molecules. In this feature article, the recent developments of macrocyclic host molecules with aromatic building blocks were summarized and discussed.

Electrochromic Polycationic Organoboronium Macrocycles with Multiple Redox States

Polycationic macrocycles are attractive as they display unique molecular switching capabilities arising from their redox properties. Although diverse polycationic macrocycles have been developed, those based on cationic boron systems remain very limited. We present herein the development of novel polycationic macrocycles by introducing organoboronium moieties into a conjugated organoboron macrocyclic framework. These macrocycles consist of four bipyridylboronium units that are connected by fluorene and either electron-deficient arylborane or electron-rich arylamine moieties. Electrochemical studies reveal that the macrocycles undergo reversible multi-step redox processes with transfer of up to 10 electrons. Switchable electrochromic behavior is demonstrated via spectroelectrochemical studies and the observed color changes are rationalized by correlation with computed electronic transitions using DFT methods.

"Texas-Sized" Molecular Boxes: From Chemistry to Applications

The design and synthesis of novel macrocyclic host molecules continues to attract attention because such species play important roles in supramolecular chemistry. However, the discovery of new classes of macrocycles presents a considerable challenge due to the need to embody by design effective molecular recognition features, as well as ideally the development of synthetic routes that permit further functionalization. In 2010, we reported a new class of macrocyclic hosts: a set of tetracationic imidazolium macrocycles, which we termed “Texas-sized” molecular boxes (TxSBs) in homage to Stoddart’s classic “blue box” (CBPQT⁴⁺). Compared with the rigid blue box, the first generation TxSB displayed considerably greater conformational flexibility and a relatively large central cavity, making it a good host for a variety of electron-rich guests. In this review, we provide a comprehensive summary of TxSB chemistry, detailing our recent progress in the area of anion-responsive supramolecular self-assembly and applications of the underlying chemistry to water purification, information storage, and controlled drug release. Our objective is to provide not only a review of the fundamental findings, but also to outline future research directions where TxSBs and their constructs may have a role to play.

Triazolate-based pillarplexes: shape-adaptive metallocavitands via rim modification of macrocyclic ligands

Rim-modified pillarplexes are prepared by a macrocycle-templated synthesis strategy. They exhibit a shape-adaptive behaviour and complementary H-bonding, showing that rim modification can modulate the flexibility and functionality of the cavitand.

Molecular recognition and sensing of dicarboxylates and dicarboxylic acids

The recognition and detection of dicarboxylic acids and dicarboxylates is of significance for a wide variety of applications, including medical diagnosis, monitoring of health and of environmental contaminants, and in industry. Hence small molecule receptors and sensors for dicarboxylic acids and dicarboxylates have great potential for applications in these fields. This review outlines the challenges faced in the recognition and detection of these species, strategies that have been used to obtain effective and observable interactions with dicarboxylic acids and dicarboxylates, and progress made in this field in the period from 2014 to 2020.

Regulating the Structures of Self-Assembled Mechanically Interlocked Moleculecular Constructs via Dianion Precursor Substituent Effects

Substituent effects play critical roles in both modulating reaction chemistry and supramolecular self-assembly processes. Using substituted terephthalate dianions (p-phthalic acid dianions; PTADAs), the effect of varying the type, number, and position of the substituents was explored in terms of their ability to regulate the inherent anion complexation features of a tetracationic macrocycle, cyclo[2](2,6-di(1H-imidazol-1-yl)pyridine)[2](1,4-dimethylenebenzene) (referred to as the Texas-sized molecular box; 1⁴⁺), in the form of its tetrakis-PF₆^- salt in DMSO. Several of the tested substituents, including 2-OH, 2,5-di(OH), 2,5-di(NH₂), 2,5-di(Me), 2,5-di(Cl), 2,5-di(Br), and 2,5-di(I), were found to promote pseudorotaxane formation in contrast to what was seen for the parent PTADA system. Other derivatives of PTADA, including those with 2,3-di(OH), 2,6-di(OH), 2,5-di(OMe), 2,3,5,6-tetra(Cl), and 2,3,5,6-tetra(F) substituents, led only to so-called outside binding, where the anion interacts with 1⁴⁺ on the outside of the macrocyclic cavity. The differing binding modes produced by the choice of PTADA derivative were found to regulate further supramolecular self-assembly when the reaction components included additional metal cations (M). Depending on the specific choice of PTADA derivatives and metal cations (M = Co²⁺, Ni²⁺, Zn²⁺, Cd²⁺, Gd³⁺, Nd³⁺, Eu³⁺, Sm³⁺, Tb³⁺), constructs involving one-dimensional polyrotaxanes, outside-type rotaxanated supramolecular organic frameworks (RSOFs), or two-dimensional metal-organic rotaxane frameworks (MORFs) could be stabilized. The presence and nature of the substituent were found to dictate which specific higher order self-assembled structure was obtained using a given cation. In the specific case of the 2,5-di(OH), 2,5-di(Cl), and 2,5-di(Br) PTADA derivatives and Eu³⁺, so-called MORFs with distinct fluorescence emission properties could be produced. The present work serves to illustrate how small changes in guest substitution patterns may be used to control structure well beyond the first interaction sphere.

Stimuli-Responsive Supramolecular Coaggregation and Disaggregation of Host-Guest Conjugates Having a Disulfide Linkage

Water-soluble cationic and anionic cyclophanes (1a and 2a, respectively) having a dabsyl group with a cleavable disulfide linkage were synthesized as a host-guest conjugate covalently bound with both host and guest components. Self-inclusion phenomena but not self-aggregation behaviors were observed for each cyclophane in aqueous media. Each cyclophane includes its own dabsyl moiety (guest component) in its macrocyclic cavity (host component) through hydrophobic interaction. When 1 equiv. of cationic 1a was added to an aqueous solution of anionic 2a, however, supramolecular coaggregates formed spontaneously through host-guest complexation. As regard the supramolecular coaggregates, the existence of larger particles was confirmed by DLS measurements and TEM observation. The hydrophobic interaction between the dabsyl moiety and macrocyclic cavity and electrostatic interactions between 1a and 2a play important roles in the supramolecular coaggregate formation. Each cyclophane having a cleavable disulfide linkage was easily transformed to the corresponding thiols by reducing reagents such as DTT, which was confirmed by MALDI-TOF MS. Disaggregation of the supramolecular coaggregates composed of 1a and 2a was successfully performed upon addition of DTT, with release of the thiol derivative of dabsyl. Such disaggregation of the coaggregates was also conducted by other external stimuli such as salts and competitive guests.

Rotaxanes comprising cyclic phenylenedioxydiacetamides and secondary mono- and bis-dialkylammonium ions: effect of macrocyclic ring size on pseudorotaxane formation

[2]Rotaxanes, stabilized through multiple and cooperative hydrogen bonding system, were synthesized from dialkylammonium ions and macrocycle possessing two phenylenedioxydiacetamide units and appropriate spacers.

Soft Materials Constructed Using Calix[4]pyrrole- and "Texas-Sized" Box-Based Anion Receptors

Soft materials have received considerable attention from supramolecular chemists and material scientists alike. This interest reflects the advantages provided by their soft, flexible nature and the convenience of the molecular self-assembly that underlies their preparation. Common soft supramolecular materials include polymeric gels, supramolecular polymers, nanoaggregates, and membranes. Polymeric gels are solidlike networks of cross-linked polymer chains. Supramolecular polymers contain repeat units connected through reversible non-covalent bonds. Nanoaggregates are formed as a result of hydrophobic interactions involving amphiphilic building blocks. Because of the presence of non-covalent interactions, supramolecular soft materials typically display stimuli-responsive or adaptive features. Various macrocyclic hosts, such as cyclodextrins, crown ethers, calixarenes, cucurbiturils, and pillararenes, and many classic non-covalent interactions have been harnessed to construct supramolecular soft materials. Only recently has anion binding been used as the underlying recognition motif. Anions are ubiquitous in the natural world. Their importance has inspired efforts to achieve good anion binding and to exploit anion recognition in a number of fields, including extraction, transport, sensing, and catalysis. Most of this effort has involved the use of stand-alone anion receptors. On the other hand, soft materials with anion recognition features could lead to new macromolecular systems of interest in the context of many application areas. In this Account, we summarize the latest efforts from our laboratory to prepare supramolecular soft materials, including polymeric gels, supramolecular polymers, and nanoaggregates, with bona fide anion recognition features. Two anion receptor systems, namely, calix[4]pyrroles (C4Ps) and a tetraimidazolium macrocycle known as the "Texas-sized" molecular box (TxSB), have been used for this purpose. To date, TxSB-based hydrogels have been utilized to capture anions from water and for coded information applications; C4P-based organic polymeric gels have been used to extract dianions from aqueous source phases and for the on-site detection of chloride anions. Polymers containing C4P and TxSB anion recognition subunits typically display responsive features and can be modified through application of appropriately chosen external stimuli. For instance, nanoaggregates may be formed as a result of the hydrophobic interactions of C4P- and TxSB-based amphiphiles. The resulting aggregates were found to mimic the structural evolution of organelles and could be used as effective anion and ion pair extractants. This Account summarizes progress to date while underscoring potential opportunities associated with combining anion recognition and soft materials chemistry. The hope is to stimulate further advances in broad areas, including polymer science, supramolecular chemistry, biology, materials research, and information storage.

Adhesive supramolecular polymeric materials constructed from macrocycle-based host–guest interactions

This review describes recent progress in adhesive supramolecular polymeric materials constructed from macrocycle-based host–guest interactions.

Supramolecularly assisted synthesis of chiral tripodal imidazolium compounds

Supramolecular interactions based on amide groups direct the preferential formation of tritopic instead of monotopic or ditopic imidazolium compounds.

Halogen and hydrogen bonding-driven self-assembly of supramolecular macrocycles and double helices from hydrogen-bonded arylamide foldamers

Halogen bonding has been used to hold hydrogen bonded short aromatic amide foldamers to form 2 + 2 or 1 + 1 macrocycles.

Rotational isomerism of the amide units in rotaxanes based on a cyclic tetraamide and secondary ammonium ions

We describe the synthesis of [2]rotaxanes consisting of a macrocyclic tetraamide and mono- and bis-ammonium ions and their conformational isomerism.

Double layer 3D codes: fluorescent supramolecular polymeric gels allowing direct recognition of the chloride anion using a smart phone

Reported here is a two-layer gel construct that permits the on-site detection of the chloride anion by means of a hand-held UV-vis lamp and a smart phone "app". To prepare this system, eight fluorescent polymeric gels G1-G8 were synthesized. Gels G1-G4 containing C4P/imidazolium-F- anion recognition motifs were used to construct a fluorescent pattern (Code A) that may be read out by a smart phone as a 3D color code (Info A). Gels G5-G8, which are based on C4P/imidazolium-Br- anion interactions, were used to construct an array (Code B) that may be read as Info B. Code B was then adhered to the surface of Code A to produce an adhered double layer code system stabilized by interfacial C4P/imidazolium-Br- anion interactions. Readout of the top layer (Code B) could be achieved without interference from Code A. Treatment with a Cl- anion source was found to delaminate the top layer and leave intact the more robust bottom layer, allowing the bottom layer (Code A) to be read out. The disparate information content associated with Codes A and B thus permits the on-site recognition of Cl-. The present sensing strategy does not rely on elaborate instrumentation and could provide a new application for elaborated soft materials.

Pillar[6]pyridinium: a hexagonally shaped molecular box that selectively recognizes multicharged anionic species

A sextuply charged cyclic cationic receptor with an extraordinary structure and unprecedented binding properties is presented. The macrocycle consists of six pyridinium ions connected by methylene linkers with an electron-deficient cavity inside. In the solid state, the cavity is padded with an organized water network that gives the macrocycle a hexagonal shape. In water, the cavity is more flexible and selectively accommodates anionic species. Of the ions of similar size the macrocycle binds most strongly those with the largest negative charge. When the net charge is the same, the most preferred are anions with delocalized charge rather that those with localized charge; remarkably, the former form inclusion complexes, while the latter are complexed externally.

Supramolecular Properties of a Monocarboxylic Acid-Functionalized "Texas-Sized" Molecular Box

A new carboxylic acid-functionalized "Texas-sized" molecular box TxSB-CO₂H has been prepared by combining two separate building blocks via an iodide-catalyzed macrocyclization reaction. A single-crystal X-ray diffraction analysis revealed a paired "clip-like" dimer in the solid state. Concentration-dependent behavior is seen for samples of TxSB-CO₂H as prepared, as inferred from ¹H NMR spectroscopic studies carried out in DMSO- d₆. However, in the presence of excess acid (1% by weight of deuterated trifluoracetic acid; TFA- d₁), little evidence of aggregation is seen in DMSO- d₆ except at the highest accessible concentrations. In contrast, the conjugate base form, TxSB-CO₂^-, produced in situ via the addition of excess triethylamine to DMSO- d₆ solutions of TxSB-CO₂H acts as a self-complementary monomer that undergoes self-assembly to stabilize a formal oligomer ([TxSB-CO₂^-] _n) with a degree of polymerization of approximately 5-6 at a concentration of 70 mM. Evidence in support of the proposed oligomerization of TxSB-CO₂^- in solution and in the solid state came from one- and two-dimensional ¹H NMR spectroscopy, X-ray crystallography, dynamic light scattering (DLS), and scanning electron microscopy (SEM). A series of solution-based analyses carried out in DMSO and DMSO- d₆ provide support for the notion that the self-assembled constructs produced from TxSB-CO₂^- are responsive to environmental stimuli, including exposure to the acetate anion (as its tetrabutylammonium, TBA⁺, salt), and changes in overall concentration, temperature, and protonation state. The resulting transformations are thought to reflect the reversible nature of the underlying noncovalent interactions. They also permit the stepwise interconversion between TxSB-CO₂H and [TxSB-CO₂^-] _n via the sequential addition of triethylamine and TFA- d₁. The present work thus serves to illustrate how appropriately functionalized molecular box-type macrocycles may be used to develop versatile stimuli-responsive materials. It also highlights how aggregated forms seen in the solid state are not necessarily retained under competitive solution-phase conditions.

Phosphate-phosphate oligomerization drives higher order co-assemblies with stacks of cyanostar macrocycles

The importance of phosphate in biology and chemistry has long motivated investigation of its recognition. Despite this interest, phosphate's facile oligomerization is only now being examined following the discovery of complexes of anion-anion dimers of hydroxyanions. Here we address how oligomerization dictates phosphate's recognition properties when engaged with planar cyanostar macrocycles that can also oligomerize by stacking. The crystal structure of cyanostar with phosphate shows an unprecedented tetrameric stack of cyanostar macrocycles threaded by a phosphate trimer, [H₂PO₄···H₂PO₄···H₂PO₄]^3-. The solution behaviour, studied as a function of solvent quality, highlights how dimers and trimers of phosphate drive formation of higher order stacks of cyanostar into dimer, trimer and tetramer co-assemblies. Solution behaviors differ significantly from simpler complexes of bisulfate hydroxyanion dimers. Phosphate oligomerization is: (1) preferred over ion pairing with tetrabutylammonium cations, (2) inhibits disassembly of the complexes upon dilution, and (3) resists interference from competitive anion solvation. The phosphate oligomers also appear critical for stability; complexation of just one phosphate with cyanostars is unfavored. The cyanostar's ability to self-assemble is found to create a tubular, highly electropositive cavity that complements the size and shape of the phosphate oligomers as well as their higher charge. When given the opportunity, phosphate will cooperate with the receptor to form co-assembled architectures.

Competition of cation–π and exo-wall π–π interactions: a novel approach to achieve ultrasensitive response

A novel approach to achieve ultrasensitive response was successfully developed by rationally introducing the competition between cation–π and exo-wall π–π interactions into a pillar[5]arene-based supramolecular organogel (P5N-OG).