1
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Stapf M, Schmidt U, Seichter W, Mazik M. Synthesis and crystal structures of two solvates of 1-{[2,6-bis-(hy-droxy-meth-yl)-4-methyl-phen-oxy]meth-yl}-3,5-bis-{[(4,6-di-methyl-pyridin-2-yl)amino]meth-yl}-2,4,6-tri-ethyl-benzene. Acta Crystallogr E Crystallogr Commun 2023; 79:1067-1071. [PMID: 37936864 PMCID: PMC10626963 DOI: 10.1107/s2056989023009155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Accepted: 10/18/2023] [Indexed: 11/09/2023]
Abstract
In the crystal structures of the formamide monosolvate (1a) and the n-propanol/H2O solvate/hydrate (1b) of the title compound, C38H50N4O3 (1), the tripodal host mol-ecule adopts a conformation in which the substituents attached to the central benzene ring are arranged in an alternating order above and below the ring plane. As a result of the different nature of the involved guest species, the crystal components in 1a create a three-dimensional supra-molecular architecture, while the crystal structure of 1b consists of two-dimensional supra-molecular aggregates extending parallel to the crystallographic ab plane.
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Affiliation(s)
- Manuel Stapf
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, Germany
| | - Ute Schmidt
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, Germany
| | - Wilhelm Seichter
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, Germany
| | - Monika Mazik
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, Germany
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2
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Weiße A, Seichter W, Mazik M. Supramolecular Motifs in the Crystal Structures of Triethylbenzene Derivatives Bearing Pyridinium Subunits in Combination with Pyrimidinyl or Pyridinyl Groups. Molecules 2023; 28:6485. [PMID: 37764259 PMCID: PMC10535844 DOI: 10.3390/molecules28186485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Revised: 08/13/2023] [Accepted: 08/23/2023] [Indexed: 09/29/2023] Open
Abstract
A series of mono- and dicationic 1,3,5-trisubstituted 2,4,6-triethylbenzenes containing pyridinium groups in combination with aminopyrimidine-/aminopyridine-based recognition units were synthesized and crystallographically studied. The combination of neutral and ionic building blocks represents a promising strategy for the development of effective and selective artificial receptors for anionic substrates. In the crystalline state, the investigated compounds show a tendency to bind the counterion PF6- in the cavity formed by the three functionalized side-arms. The intermolecular interactions with the PF6- ion comprise N-H∙∙∙F and C-H∙∙∙F bonds. Detailed analysis of various supramolecular motifs, including interactions with solvent molecules, provides deeper insights into the processes of molecular recognition. The information obtained is useful in the development of new receptor molecules for anions and in the selection of the most appropriate counterion.
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Affiliation(s)
| | | | - Monika Mazik
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Straße 29, 09596 Freiberg, Germany; (A.W.); (W.S.)
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3
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Fuhrmann F, Meier E, Seichter W, Mazik M. Crystal structure of the complex of 2,4,6-tri-ethyl-1,3,5-tris-[(4-methyl-1 H-indazol-1-yl)meth-yl]-benzene with NH 4PF 6. Acta Crystallogr E Crystallogr Commun 2022; 78:785-788. [PMID: 35974813 PMCID: PMC9361362 DOI: 10.1107/s2056989022006867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 07/05/2022] [Indexed: 06/15/2023]
Abstract
The complex of 2,4,6-tri-ethyl-1,3,5-tris-[(4-methyl-1H-indazol-1-yl)meth-yl]-benz-ene with ammonium hexa-fluorophosphate, C39H42N6·NH4 +·PF6 -, crystallizes in the monoclinic space group P21 with two mol-ecules of the receptor, two NH4 + and two PF6 - ions in the asymmetric unit. In each of the complexes the ammonium ion resides in the cavity of the receptor mol-ecule and is fixed in its position by three N-H⋯N bonds, while the remaining hydrogen atom of the cation acts as a bifurcated binding site for N-H⋯F bonding to the counter-anion. The crystal is composed of one-dimensional supra-molecular aggregates extending along the a-axis direction.
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Affiliation(s)
- Felix Fuhrmann
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, Germany
| | - Eric Meier
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, Germany
| | - Wilhelm Seichter
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, Germany
| | - Monika Mazik
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, Germany
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4
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Shaffer CC, Oliver AG, Smith BD. Co-crystals of tetrahaloauric acid and 1,3,5-(methylacetamide)benzene-based tectons: consistent trapping of high energy molecular conformation. CrystEngComm 2022. [DOI: 10.1039/d2ce00463a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Co-crystal engineering is a promising method to create new classes of advanced materials. Co-crystal structure prediction is more challenging when one or more of the lattice constituents (tectons) are flexible...
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Stapf M, Leibiger B, Schwarzer A, Mazik M. Crystal structures of 2-[3,5-bis-(bromo-meth-yl)-2,4,6-tri-ethyl-benz-yl]isoindoline-1,3-dione and 2-{5-(bromo-meth-yl)-3-[(1,3-dioxoisoindolin-2-yl)meth-yl]-2,4,6-tri-ethyl-benz-yl}isoindoline-1,3-dione. Acta Crystallogr E Crystallogr Commun 2021; 77:919-923. [PMID: 34584762 PMCID: PMC8423014 DOI: 10.1107/s205698902100788x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Accepted: 08/02/2021] [Indexed: 11/10/2022]
Abstract
The title compounds, C23H25Br2NO2 (1) and C31H29BrN2O4 (2), crystallize in the space group P21/n with two (1-A and 1-B) and one mol-ecules, respectively, in the asymmetric unit of the cell. The mol-ecular conformation of these compounds is stabilized by intra-molecular C-H⋯O hydrogen bonds and C-H⋯N or C-H⋯π inter-actions. The crystal structure of 1 features a relatively strong Br⋯O=C halogen bond, which is not observed in the case of 2. Both crystal structures are characterized by the presence of C-H⋯Br hydrogen bonds and numerous inter-molecular C-H⋯O hydrogen-bonding inter-actions.
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Affiliation(s)
- Manuel Stapf
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg/Sachsen, Germany
| | - Betty Leibiger
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg/Sachsen, Germany
| | - Anke Schwarzer
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg/Sachsen, Germany
| | - Monika Mazik
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg/Sachsen, Germany
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6
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Seidel P, Seichter W, Schwarzer A, Mazik M. Fluorene Derivatives Bearing Two to Seven Phthalimidomethyl Groups: Syntheses, Crystal Structures and Conversion to Amines. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100125] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Pierre Seidel
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
| | - Wilhelm Seichter
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
| | - Anke Schwarzer
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
| | - Monika Mazik
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
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7
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Köhler L, Hübler C, Seichter W, Mazik M. Binding modes of methyl α- d-glucopyranoside to an artificial receptor in crystalline complexes. RSC Adv 2021; 11:22221-22229. [PMID: 35480817 PMCID: PMC9034237 DOI: 10.1039/d1ra03390e] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 02/28/2022] [Accepted: 06/01/2021] [Indexed: 01/04/2023] Open
Abstract
Complexes formed between methyl α-d-glucopyranoside and an artificial receptor represent a valuable source of information about the basic molecular features of carbohydrate recognition.
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Affiliation(s)
- Linda Köhler
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Strasse 29, 09599 Freiberg, Germany
| | - Conrad Hübler
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Strasse 29, 09599 Freiberg, Germany
| | - Wilhelm Seichter
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Strasse 29, 09599 Freiberg, Germany
| | - Monika Mazik
- Institut für Organische Chemie, Technische Universität Bergakademie Freiberg, Leipziger Strasse 29, 09599 Freiberg, Germany
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Köhler L, Seichter W, Mazik M. Complexes Formed between Artificial Receptors and β‐Glucopyranoside in the Crystalline State. European J Org Chem 2020. [DOI: 10.1002/ejoc.202001101] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Linda Köhler
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
| | - Wilhelm Seichter
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
| | - Monika Mazik
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
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9
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Stapf M, Seichter W, Mazik M. Crystal structures of monohydrate and methanol solvate compounds of {1-[(3,5-bis{[(4,6-dimethylpyridin-2-yl)amino]methyl}-2,4,6-triethylbenzyl)amino]cyclopentyl}methanol. ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS 2020; 76:1679-1683. [PMID: 33117589 PMCID: PMC7534252 DOI: 10.1107/s2056989020012554] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 09/15/2020] [Indexed: 11/23/2022]
Abstract
In the crystal structures of the monohydrate and methanol solvate title compounds, the host molecule adopts similar geometries with an alternating orientation of the substituents above and below the plane of the central arene ring. In the title monohydrate compound, 1a, and the methanol solvate compound, 1b, the triethylbenzene derivative, C35H51N5O, has three functionalized side arms and three ethyl groups, the former being located on one side of the central benzene ring, while the latter are directed to the opposite side. Both the crystals are constructed of structurally similar dimers of 1:1 host–guest complexes held together by N—H⋯O and O—H⋯N hydrogen bonds, and in 1a additionally by O—H⋯O hydrogen bonds. The structure of 1b contains additional highly disordered solvent molecules. Thus, the SQUEEZE routine [Spek (2015 ▸). Acta Cryst. C71, 9–18] in PLATON was used to generate a modified data set, in which the contribution of the disordered molecules to the structure amplitudes is eliminated. These solvent molecules are not considered in the reported chemical formula.
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Affiliation(s)
- Manuel Stapf
- Technische Universität Bergakademie Freiberg, Leipziger Str. 29, D-09596 Freiberg/Sachsen, Germany
| | - Wilhelm Seichter
- Technische Universität Bergakademie Freiberg, Leipziger Str. 29, D-09596 Freiberg/Sachsen, Germany
| | - Monika Mazik
- Technische Universität Bergakademie Freiberg, Leipziger Str. 29, D-09596 Freiberg/Sachsen, Germany
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10
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Stapf M, Seichter W, Mazik M. Cycloalkyl Groups as Subunits of Artificial Carbohydrate Receptors: Effect of Ring Size of the Cycloalkyl Unit on the Receptor Efficiency. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000803] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Manuel Stapf
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
| | - Wilhelm Seichter
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
| | - Monika Mazik
- Institut für Organische Chemie Technische Universität Bergakademie Freiberg Leipziger Strasse 29 09599 Freiberg Germany
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11
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Schulze MM, Koch N, Seichter W, Mazik M. Crystalline Ammonium Complexes of Trimethyl- and Triethylbenzene-Based Tripodal Compounds Bearing Pyrazole and Indazole Groups. European J Org Chem 2018. [DOI: 10.1002/ejoc.201800480] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Mathias M. Schulze
- Institut für Organische Chemie; Technische Universität Bergakademie Freiberg; Leipziger Strasse 29 09599 Freiberg Germany
| | - Niklas Koch
- Institut für Organische Chemie; Technische Universität Bergakademie Freiberg; Leipziger Strasse 29 09599 Freiberg Germany
| | - Wilhelm Seichter
- Institut für Organische Chemie; Technische Universität Bergakademie Freiberg; Leipziger Strasse 29 09599 Freiberg Germany
| | - Monika Mazik
- Institut für Organische Chemie; Technische Universität Bergakademie Freiberg; Leipziger Strasse 29 09599 Freiberg Germany
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