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Hamid Butt M, Ul Ain Q, Arfan Yawer M, Lakhani A, Ali Hashmi M. Carboxyl substituted Bambus[6]uril as a Novel Macrocyclic Receptor for Cyanide Anion: A DFT Study. COMPUT THEOR CHEM 2023. [DOI: 10.1016/j.comptc.2023.114081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
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Assaf KI. Host-guest complexation between cucurbit[7]uril and doxepin induced supramolecular assembly. Org Biomol Chem 2022; 20:5796-5802. [PMID: 35833381 DOI: 10.1039/d2ob01065h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The supramolecular complexation of doxepin (DOX) with cucurbit[7]uril (CB7) was investigated in aqueous solution. The results indicated the formation of a host-guest complex, as verified by complexation-induced chemical shifts in the NMR experiments and supported by quantum-chemical calculations, in which the alkylammonium tail of DOX was found to be encapsulated inside the CB7 cavity, while the tricyclic moiety remained exposed to bulk water. Isothermal titration calorimetry and dye-displacement experiments provided a moderate binding affinity (104 M-1). Interestingly, the partial encapsulation of DOX by the CB7 macrocycle led to the development of a supramolecular assembly at a low millimolar concentration, as verified by NMR and dynamic light scattering (DLS) measurements, which showed homogeneous size distributions with an average diameter of 1700 nm.
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Affiliation(s)
- Khaleel I Assaf
- Department of Chemistry, Faculty of Science, Al-Balqa Applied University, Al-Salt 19117, Jordan.
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Stabilization of Near Identical Hydrogen Bonded Octameric Water Clusters in Crystal Structures of Three Distinct Non-Charged Polyamide Macrocyclic Host Molecules. Molecules 2021; 26:molecules26092787. [PMID: 34065060 PMCID: PMC8125911 DOI: 10.3390/molecules26092787] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Revised: 04/27/2021] [Accepted: 05/06/2021] [Indexed: 11/16/2022] Open
Abstract
In this paper, we present a comparative analysis of the solid state structures of three well-resolved hydrates of macrocyclic host molecules 1a, 1b, and 2 containing an intrannular amide-aryl substituent (lariat arm) connected to a fixed 26-membered ring in a normal (-NHCOAr, hosts 1a and 1b) or reverse manner (-CONHAr, host 2). Despite different chemical structures, these hosts crystallize as isostructural tetrahydrates in the same P-1 space group. Moreover, their crystals exhibit identical hydrogen bond motifs resulting in a stabilization of an almost identical unusual octameric water cluster built from the cyclic tetramer core and four water molecules, attached sequentially in an "up-and-down" manner. Further analysis reveals that, among the series, the structure of host 2 provides the most suitable environment for the accommodation of this type of water cluster.
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Liu Y, Zhang Y, Yu H, Liu Y. Cucurbituril‐Based Biomacromolecular Assemblies. Angew Chem Int Ed Engl 2020; 60:3870-3880. [DOI: 10.1002/anie.202009797] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Indexed: 12/29/2022]
Affiliation(s)
- Yao‐Hua Liu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Ying‐Ming Zhang
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Hua‐Jiang Yu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Yu Liu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
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Affiliation(s)
- Yao‐Hua Liu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Ying‐Ming Zhang
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Hua‐Jiang Yu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Yu Liu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
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Xu W, Feng H, Zhao W, Huang C, Redshaw C, Tao Z, Xiao X. Amino acid recognition by a fluorescent chemosensor based on cucurbit[8]uril and acridine hydrochloride. Anal Chim Acta 2020; 1135:142-149. [PMID: 33070851 DOI: 10.1016/j.aca.2020.09.028] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Revised: 08/26/2020] [Accepted: 09/13/2020] [Indexed: 01/16/2023]
Abstract
A new fluorescent chemosensor comprised of cucurbit[8]uril (Q[8]) and acridine hydrochloride (AC) has been designed and utilized for the recognition of amino acids. The AC was encapsulated by the Q[8] cavity and formed a 1:2 host-guest inclusion complex both in solution (aqueous) and in the solid-state. Whilst free AC is known to be strongly fluorescent, this strong fluorescence was quenched in the inclusion complex Q [8]-AC. This non-fluorescent complex Q[8]-AC was capable of serving as a fluorescence "off-on" probe, and was able to recognize either L-Phe or L-Trp via the competitive interaction between L-Phe or L-Trp. Moreover, the pH responsive nature of the probe allowed for the detection of basic amino acids, namely L-Arg, L-His, or L-Lys). As a result, a fluorescence method for the detection of five amino acids using a single system has been developed.
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Affiliation(s)
- Weitao Xu
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang, 550025, China
| | - Huaming Feng
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang, 550025, China
| | - Weiwei Zhao
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang, 550025, China
| | - Chunhua Huang
- National Research Center for Geoanalysis, China Geological Survey, Beijing, 100037, China
| | - Carl Redshaw
- Department of Chemistry and Biochemistry, University of Hull, Hull, HU6 7RX, UK
| | - Zhu Tao
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang, 550025, China
| | - Xin Xiao
- Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, Guizhou University, Guiyang, 550025, China.
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Barrio JD, Liu J, Brady RA, Tan CSY, Chiodini S, Ricci M, Fernández-Leiro R, Tsai CJ, Vasileiadi P, Di Michele L, Lairez D, Toprakcioglu C, Scherman OA. Emerging Two-Dimensional Crystallization of Cucurbit[8]uril Complexes: From Supramolecular Polymers to Nanofibers. J Am Chem Soc 2019; 141:14021-14025. [PMID: 31422657 PMCID: PMC6772898 DOI: 10.1021/jacs.9b07506] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The binding of imidazolium salts to cucurbit[8]uril, CB[8], triggers a stepwise self-assembly process with semiflexible polymer chains and crystalline nanostructures as early- and late-stage species, respectively. In such a process, which involves the crystallization of the host-guest complexes, the guest plays a critical role in directing self-assembly toward desirable morphologies. These include platelet-like aggregates and two-dimensional (2D) fibers, which, moreover, exhibit viscoelastic and lyotropic properties. Our observations provide a deeper understanding of the self-assembly of CB[8] complexes, with fundamental implications in the design of functional 2D systems and crystalline materials.
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Affiliation(s)
- Jesús Del Barrio
- Instituto de Nanociencia de Aragón , Universidad de Zaragoza , 50018 Zaragoza , Spain.,Departamento de Química Orgánica, Facultad de Ciencias, Instituto de Ciencia de Materiales de Aragón , CSIC-Universidad de Zaragoza , 50018 Zaragoza , Spain
| | - Ji Liu
- Melville Laboratory for Polymer Synthesis, Department of Chemistry , University of Cambridge , Cambridge CB2 1EW , United Kingdom
| | - Ryan A Brady
- Cavendish Laboratory, Department of Physics , University of Cambridge , JJ Thomson Avenue , Cambridge CB3 0HE , United Kingdom
| | - Cindy S Y Tan
- Melville Laboratory for Polymer Synthesis, Department of Chemistry , University of Cambridge , Cambridge CB2 1EW , United Kingdom.,Faculty of Applied Sciences , Universiti Teknologi MARA , 94300 Kota Samarahan , Sarawak , Malaysia
| | - Stefano Chiodini
- Instituto de Nanociencia de Aragón , Universidad de Zaragoza , 50018 Zaragoza , Spain
| | - Maria Ricci
- Cavendish Laboratory, Department of Physics , University of Cambridge , JJ Thomson Avenue , Cambridge CB3 0HE , United Kingdom
| | - Rafael Fernández-Leiro
- Spanish National Cancer Research Centre (CNIO) , Melchor Fernández Almagro 3 , 28029 Madrid , Spain
| | - Ching-Ju Tsai
- Laboratory of Biomolecular Research, Division of Biology and Chemistry , Paul Scherrer Institute , 5232 Villigen PSI , Switzerland
| | | | - Lorenzo Di Michele
- Cavendish Laboratory, Department of Physics , University of Cambridge , JJ Thomson Avenue , Cambridge CB3 0HE , United Kingdom
| | - Didier Lairez
- Laboratoire Léon Brillouin, CNRS, CEA , Université Paris-Saclay , 91191 Gif-sur-Yvette cedex , France.,Laboratoire des Solides Irradiés, Ecole polytechnique, CNRS, CEA , Université Paris-Saclay , 91128 Palaiseau cedex , France
| | | | - Oren A Scherman
- Melville Laboratory for Polymer Synthesis, Department of Chemistry , University of Cambridge , Cambridge CB2 1EW , United Kingdom
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Dąbrowa K, Ceborska M, Jurczak J. Solid-state entrapment of water clusters by 26-membered pentamide unclosed cryptands – probing the para-substituent effect. Supramol Chem 2017. [DOI: 10.1080/10610278.2017.1418877] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Kajetan Dąbrowa
- Institute of Organic Chemistry, Polish Academy of Sciences, Warsaw, Poland
| | - Magdalena Ceborska
- Institute of Physical Chemistry, Polish Academy of Sciences, Warsaw, Poland
| | - Janusz Jurczak
- Institute of Organic Chemistry, Polish Academy of Sciences, Warsaw, Poland
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