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Klinshov VV, D'Huys O. Noise-induced switching in an oscillator with pulse delayed feedback: A discrete stochastic modeling approach. CHAOS (WOODBURY, N.Y.) 2022; 32:093141. [PMID: 36182395 DOI: 10.1063/5.0100698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Accepted: 08/22/2022] [Indexed: 06/16/2023]
Abstract
We study the dynamics of an oscillatory system with pulse delayed feedback and noise of two types: (i) phase noise acting on the oscillator and (ii) stochastic fluctuations of the feedback delay. Using an event-based approach, we reduce the system dynamics to a stochastic discrete map. For weak noise, we find that the oscillator fluctuates around a deterministic state, and we derive an autoregressive model describing the system dynamics. For stronger noise, the oscillator demonstrates noise-induced switching between various deterministic states; our theory provides a good estimate of the switching statistics in the linear limit. We show that the robustness of the system toward this switching is strikingly different depending on the type of noise. We compare the analytical results for linear coupling to numerical simulations of nonlinear coupling and find that the linear model also provides a qualitative explanation for the differences in robustness to both types of noise. Moreover, phase noise drives the system toward higher frequencies, while stochastic delays do not, and we relate this effect to our theoretical results.
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Affiliation(s)
- Vladimir V Klinshov
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ul'yanov Street, Nizhny Novgorod 603950, Russia
| | - Otti D'Huys
- Department of Applied Computing Sciences, Maastricht University, P.O. Box 616, 6200 MD Maastricht, The Netherlands
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2
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Hunter I, Norton MM, Chen B, Simonetti C, Moustaka ME, Touboul J, Fraden S. Pattern formation in a four-ring reaction-diffusion network with heterogeneity. Phys Rev E 2022; 105:024310. [PMID: 35291089 DOI: 10.1103/physreve.105.024310] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 01/28/2022] [Indexed: 11/07/2022]
Abstract
In networks of nonlinear oscillators, symmetries place hard constraints on the system that can be exploited to predict universal dynamical features and steady states, providing a rare generic organizing principle for far-from-equilibrium systems. However, the robustness of this class of theories to symmetry-disrupting imperfections is untested in free-running (i.e., non-computer-controlled) systems. Here, we develop a model experimental reaction-diffusion network of chemical oscillators to test applications of the theory of dynamical systems with symmeries in the context of self-organizing systems relevant to biology and soft robotics. The network is a ring of four microreactors containing the oscillatory Belousov-Zhabotinsky reaction coupled to nearest neighbors via diffusion. Assuming homogeneity across the oscillators, theory predicts four categories of stable spatiotemporal phase-locked periodic states and four categories of invariant manifolds that guide and structure transitions between phase-locked states. In our experiments, we observed that three of the four phase-locked states were displaced from their idealized positions and, in the ensemble of measurements, appeared as clusters of different shapes and sizes, and that one of the predicted states was absent. We also observed the predicted symmetry-derived synchronous clustered transients that occur when the dynamical trajectories coincide with invariant manifolds. Quantitative agreement between experiment and numerical simulations is found by accounting for the small amount of experimentally determined heterogeneity in intrinsic frequency. We further elucidate how different patterns of heterogeneity impact each attractor differently through a bifurcation analysis. We show that examining bifurcations along invariant manifolds provides a general framework for developing intuition about how chemical-specific dynamics interact with topology in the presence of heterogeneity that can be applied to other oscillators in other topologies.
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Affiliation(s)
- Ian Hunter
- Brandeis University Physics, Waltham, Massachusetts 02453, USA
| | - Michael M Norton
- Center for Neural Engineering, Department of Engineering Science and Mechanics, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Bolun Chen
- Volen National Center for Complex Systems, Brandeis University, Waltham, Massachusetts 02453, USA.,Department of Physics, Boston University, Boston Massachusetts 02215, USA
| | - Chris Simonetti
- Brandeis University Physics, Waltham, Massachusetts 02453, USA
| | | | - Jonathan Touboul
- Volen National Center for Complex Systems, Brandeis University, Waltham, Massachusetts 02453, USA.,Brandeis University Mathematics Department, Waltham, Massachusetts 02453, USA
| | - Seth Fraden
- Brandeis University Physics, Waltham, Massachusetts 02453, USA
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Mallphanov IL, Vanag VK. Chemical micro-oscillators based on the Belousov–Zhabotinsky reaction. RUSSIAN CHEMICAL REVIEWS 2021. [DOI: 10.1070/rcr5009] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Abstract
The results of studies on the development of micro-oscillators (MOs) based on the Belousov –Zhabotinsky (BZ) oscillatory chemical reaction are integrated and systematized. The mechanisms of the BZ reaction and the methods of immobilization of the catalyst of the BZ reaction in micro-volumes are briefly discussed. Methods for creating BZ MOs based on water microdroplets in the oil phase and organic and inorganic polymer microspheres are considered. Methods of control and management of the dynamics of BZ MO networks are described, including methods of MO synchronization. The prospects for the design of neural networks of MOs with intelligent-like behaviour are outlined. Such networks present a new area of nonlinear chemistry, including, in particular, the creation of a chemical ‘computer’.
The bibliography includes 250 references.
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Safonov DA, Vanag VK. Oscillatory microcells connected on a ring by chemical waves. CHAOS (WOODBURY, N.Y.) 2021; 31:063134. [PMID: 34241281 DOI: 10.1063/5.0046051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 06/03/2021] [Indexed: 06/13/2023]
Abstract
The dynamics of four coupled microcells with the oscillatory Belousov-Zhabotinsky (BZ) reaction in them is analyzed with the aid of partial differential equations. Identical BZ microcells are coupled in a circle via identical narrow channels containing all the components of the BZ reaction, which is in the stationary excitable state in the channels. Spikes in the BZ microcells generate unidirectional chemical waves in the channels. A thin filter is put in between the end of the channel and the cell. To make coupling between neighboring cells of the inhibitory type, hydrophobic filters are used, which let only Br2 molecules, the inhibitor of the BZ reaction, go through the filter. To simulate excitatory coupling, we use a hypothetical filter that let only HBrO2 molecules, the activator of the BZ reaction, go through it. New dynamic modes found in the described system are compared with the "old" dynamic modes found earlier in the analogous system of the "single point" BZ oscillators coupled in a circle by pulses with time delay. The "new" and "old" dynamic modes found for inhibitory coupling match well, the only difference being much broader regions of multi-rhythmicity in the "new" dynamic modes. For the excitatory type of coupling, in addition to four symmetrical modes of the "old" type, many new asymmetrical modes coexisting with the symmetrical ones have been found. Asymmetrical modes are characterized by the spikes occurring any time within some finite time intervals.
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Affiliation(s)
- Dmitry A Safonov
- Centre for Nonlinear Chemistry, Immanuel Kant Baltic Federal University, 14 A. Nevskogo str., Kaliningrad 236041, Russia
| | - Vladimir K Vanag
- Centre for Nonlinear Chemistry, Immanuel Kant Baltic Federal University, 14 A. Nevskogo str., Kaliningrad 236041, Russia
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Klinshov V, Shchapin D, D'Huys O. Mode Hopping in Oscillating Systems with Stochastic Delays. PHYSICAL REVIEW LETTERS 2020; 125:034101. [PMID: 32745403 DOI: 10.1103/physrevlett.125.034101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Revised: 05/06/2020] [Accepted: 06/08/2020] [Indexed: 06/11/2023]
Abstract
We study a noisy oscillator with pulse delayed feedback, theoretically and in an electronic experimental implementation. Without noise, this system has multiple stable periodic regimes. We consider two types of noise: (i) phase noise acting on the oscillator state variable and (ii) stochastic fluctuations of the coupling delay. For both types of stochastic perturbations the system hops between the deterministic regimes, but it shows dramatically different scaling properties for different types of noise. The robustness to conventional phase noise increases with coupling strength. However for stochastic variations in the coupling delay, the lifetimes decrease exponentially with the coupling strength. We provide an analytic explanation for these scaling properties in a linearized model. Our findings thus indicate that the robustness of a system to stochastic perturbations strongly depends on the nature of these perturbations.
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Affiliation(s)
- Vladimir Klinshov
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ul'yanov Street, 603950, Nizhny Novgorod, Russia
| | - Dmitry Shchapin
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ul'yanov Street, 603950, Nizhny Novgorod, Russia
| | - Otti D'Huys
- Department of Mathematics, Aston University, B4 7ET Birmingham, United Kingdom
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Smelov PS, Proskurkin IS, Vanag VK. Controllable switching between stable modes in a small network of pulse-coupled chemical oscillators. Phys Chem Chem Phys 2019; 21:3033-3043. [DOI: 10.1039/c8cp07374k] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Switching between stable oscillatory modes in a network of four Belousov–Zhabotinsky oscillators unidirectionally coupled in a ring analysed computationally and experimentally.
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Affiliation(s)
- Pavel S. Smelov
- Centre for Nonlinear Chemistry
- Immanuel Kant Baltic Federal University
- Kaliningrad
- Russia
| | - Ivan S. Proskurkin
- Centre for Nonlinear Chemistry
- Immanuel Kant Baltic Federal University
- Kaliningrad
- Russia
| | - Vladimir K. Vanag
- Centre for Nonlinear Chemistry
- Immanuel Kant Baltic Federal University
- Kaliningrad
- Russia
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Vanag VK, Yasuk VO. Dynamic modes in a network of five oscillators with inhibitory all-to-all pulse coupling. CHAOS (WOODBURY, N.Y.) 2018; 28:033105. [PMID: 29604639 DOI: 10.1063/1.5004015] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The dynamic modes of five almost identical oscillators with pulsatile inhibitory coupling with time delay have been studied theoretically. The models of the Belousov-Zhabotinsky reaction and phase oscillators with all-to-all coupling have been considered. In the parametric plane Cinh-τ, where Cinh is the coupling strength and τ is the time delay between a spike in one oscillator and pulsed perturbations of all other oscillators, three main regimes have been found: regular modes, when each oscillator gives only one spike during the global period T, C (complex) modes, when the number of pulses of different oscillators is different, and OS (oscillations-suppression) modes, when at least one oscillator is suppressed. The regular modes consist of several cluster modes and are found at relatively small Cinh. The C and OS modes observed at larger Cinh intertwine in the Cinh-τ plane. In a relatively narrow range of Cinh, the dynamics of the C modes are very sensitive to small changes in Cinh and τ, as well as to the initial conditions, which are the characteristic features of the chaos. On the other hand, the dynamics of the C modes are periodic (but with different periods) and well reproducible. The number of different C modes is enormously large. At still larger Cinh, the C modes lose sensitivity to small changes in the parameters and finally vanish, while the OS modes survive.
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Affiliation(s)
- Vladimir K Vanag
- Immanuel Kant Baltic Federal University, 14 A. Nevskogo str., Kaliningrad 236041, Russia
| | - Vitaly O Yasuk
- Immanuel Kant Baltic Federal University, 14 A. Nevskogo str., Kaliningrad 236041, Russia
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Safonov DA, Vanag VK. Dynamical modes of two almost identical chemical oscillators connected via both pulsatile and diffusive coupling. Phys Chem Chem Phys 2018; 20:11888-11898. [DOI: 10.1039/c7cp08032h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The dynamics of two almost identical chemical oscillators with mixed diffusive and pulsatile coupling are systematically studied.
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Affiliation(s)
- Dmitry A. Safonov
- Centre for Nonlinear Chemistry
- Immanuel Kant Baltic Federal University
- Kaliningrad
- Russia
| | - Vladimir K. Vanag
- Centre for Nonlinear Chemistry
- Immanuel Kant Baltic Federal University
- Kaliningrad
- Russia
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Smelov PS, Vanag VK. A 'reader' unit of the chemical computer. ROYAL SOCIETY OPEN SCIENCE 2018; 5:171495. [PMID: 29410852 PMCID: PMC5792929 DOI: 10.1098/rsos.171495] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 11/28/2017] [Indexed: 05/03/2023]
Abstract
We suggest the main principals and functional units of the parallel chemical computer, namely, (i) a generator (which is a network of coupled oscillators) of oscillatory dynamic modes, (ii) a unit which is able to recognize these modes (a 'reader') and (iii) a decision-making unit, which analyses the current mode, compares it with the external signal and sends a command to the mode generator to switch it to the other dynamical regime. Three main methods of the functioning of the reader unit are suggested and tested computationally: (a) the polychronization method, which explores the differences between the phases of the generator oscillators; (b) the amplitude method which detects clusters of the generator and (c) the resonance method which is based on the resonances between the frequencies of the generator modes and the internal frequencies of the damped oscillations of the reader cells. Pro and contra of these methods have been analysed.
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