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Ażgin J, Wesoły M, Durka K, Sakurai H, Wróblewski W, Kasprzak A. Expanding the library of sumanene molecular receptors for caesium-selective potentiometric sensors. Dalton Trans 2024. [PMID: 38247442 DOI: 10.1039/d3dt03885h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2024]
Abstract
This paper reports the synthesis and characterization of eight sumanene molecular receptors for the selective recognition of caesium cations (Cs+). The sumanene derivatives differed in the number (from one to nine), type (electron donating or electron withdrawing) and method of the attachment (functionalization of sumanene at the benzylic or aromatic carbons) of substituents in the sumanene skeleton. The ultimate goal of this work was to investigate the prospective use of various sumanene derivatives in the design of Cs+-selective potentiometric sensors, thus, expanding the library of sumanene receptors for such applications. Spectroscopic fluorescence titration with caesium hexafluorophosphate revealed that the formation of sandwich complexes is highly favourable, but the steric hindrance of bulky substituents can disrupt this preference. In the case of triaryl-substituted sumanene derivatives, theoretical calculations show that, indeed, sandwich complexes are energetically more advantageous by 2.3 times than 1 : 1 complexes. Furthermore, such functionalization significantly increases receptor solubility in the polymeric membrane of the potentiometric sensors, which was quantitatively evaluated with the COSMO model.
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Affiliation(s)
- Joachim Ażgin
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego Str. 3, 00-664 Warsaw, Poland.
| | - Małgorzata Wesoły
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego Str. 3, 00-664 Warsaw, Poland.
| | - Krzysztof Durka
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego Str. 3, 00-664 Warsaw, Poland.
| | - Hidehiro Sakurai
- Division of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, 565-0871 Osaka, Japan
- Innovative Catalysis Science Division, Institute for Open and Transdisciplinary Research Initiatives (ICS-OTRI), Osaka University, Suita, Osaka 565-0871, Japan
| | - Wojciech Wróblewski
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego Str. 3, 00-664 Warsaw, Poland.
| | - Artur Kasprzak
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego Str. 3, 00-664 Warsaw, Poland.
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Yang JF, Wang F, Wang MY, Wang D, Zhou ZS, Hao GF, Li QX, Yang GF. CIPDB: A biological structure databank for studying cation and π interactions. Drug Discov Today 2023; 28:103546. [PMID: 36871844 DOI: 10.1016/j.drudis.2023.103546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 02/11/2023] [Accepted: 02/28/2023] [Indexed: 03/07/2023]
Abstract
As major forces for modulating protein folding and molecular recognition, cation and π interactions are extensively identified in protein structures. They are even more competitive than hydrogen bonds in molecular recognition, thus, are vital in numerous biological processes. In this review, we introduce the methods for the identification and quantification of cation and π interactions, provide insights into the characteristics of cation and π interactions in the natural state, and reveal their biological function together with our developed database (Cation and π Interaction in Protein Data Bank; CIPDB; http://chemyang.ccnu.edu.cn/ccb/database/CIPDB). This review lays the foundation for the in-depth study of cation and π interactions and will guide the use of molecular design for drug discovery.
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Affiliation(s)
- Jing-Fang Yang
- Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, PR China; International Joint Research Center for Intelligent Biosensor Technology and Health, Central China Normal University, Wuhan 430079, PR China; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Fan Wang
- Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, PR China; International Joint Research Center for Intelligent Biosensor Technology and Health, Central China Normal University, Wuhan 430079, PR China
| | - Meng-Yao Wang
- Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, PR China; International Joint Research Center for Intelligent Biosensor Technology and Health, Central China Normal University, Wuhan 430079, PR China
| | - Di Wang
- Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, PR China; International Joint Research Center for Intelligent Biosensor Technology and Health, Central China Normal University, Wuhan 430079, PR China
| | - Zhong-Shi Zhou
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Ge-Fei Hao
- Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, PR China; International Joint Research Center for Intelligent Biosensor Technology and Health, Central China Normal University, Wuhan 430079, PR China; State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Research and Development Center for Fine Chemicals, Guizhou University, Guiyang 550025, PR China.
| | - Qing X Li
- Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI 96822, USA.
| | - Guang-Fu Yang
- Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, PR China; International Joint Research Center for Intelligent Biosensor Technology and Health, Central China Normal University, Wuhan 430079, PR China; Collaborative Innovation Center of Chemical Science and Engineering, Tianjin 300072, PR China.
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Kasprzak A, Tobolska A, Sakurai H, Wróblewski W. Tuning the sumanene receptor structure towards the development of potentiometric sensors. Dalton Trans 2021; 51:468-472. [PMID: 34904597 DOI: 10.1039/d1dt03467g] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein, we report for the first time the application of a sumanene derivative in potentiometric recognition of caesium cations. The structure of the sumanene receptor was carefully tuned to obtain its compatibility with polyvinyl chloride plasticized membranes of potentiometric sensors. The developed ion-selective electrodes based on membranes doped with octyloxybenzene sumanene exhibited a near theoretical sensitivity towards caesium cations, with a detection limit of 4 μM Cs+.
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Affiliation(s)
- Artur Kasprzak
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego Str. 3, 00-664 Warsaw, Poland.
| | - Aleksandra Tobolska
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego Str. 3, 00-664 Warsaw, Poland. .,Faculty of Chemistry, University of Warsaw, Pasteura Str. 1, 02-093 Warsaw, Poland
| | - Hidehiro Sakurai
- Division of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, 565-0871 Osaka, Japan.,Innovative Catalysis Science Division, Institute for Open and Transdisciplinary Research Initiatives (ICS-OTRI), Osaka University, Suita, Osaka 565-0871, Japan
| | - Wojciech Wróblewski
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego Str. 3, 00-664 Warsaw, Poland.
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Vaňura P, Sýkora D, Uhlíková T. Interaction of Ag+ with corannulene: Experimental and theoretical study. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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6
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Xiao X, Chen H, Dong X, Ren D, Deng Q, Wang D, Tian W. A Double Cation–π‐Driven Strategy Enabling Two‐Dimensional Supramolecular Polymers as Efficient Catalyst Carriers. Angew Chem Int Ed Engl 2020; 59:9534-9541. [DOI: 10.1002/anie.202000255] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Revised: 02/19/2020] [Indexed: 12/12/2022]
Affiliation(s)
- Xuedong Xiao
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
| | - Hongbo Chen
- State Key Laboratory of Polymer Physics and ChemistryChangchun Institute of Applied ChemistryChinese Academy of Sciences Changchun Jilin 130022 China
| | - Xuxu Dong
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
| | - Dazhuo Ren
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
| | - Qiang Deng
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
| | - Dapeng Wang
- State Key Laboratory of Polymer Physics and ChemistryChangchun Institute of Applied ChemistryChinese Academy of Sciences Changchun Jilin 130022 China
| | - Wei Tian
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
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7
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Xiao X, Chen H, Dong X, Ren D, Deng Q, Wang D, Tian W. A Double Cation–π‐Driven Strategy Enabling Two‐Dimensional Supramolecular Polymers as Efficient Catalyst Carriers. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202000255] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Xuedong Xiao
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
| | - Hongbo Chen
- State Key Laboratory of Polymer Physics and ChemistryChangchun Institute of Applied ChemistryChinese Academy of Sciences Changchun Jilin 130022 China
| | - Xuxu Dong
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
| | - Dazhuo Ren
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
| | - Qiang Deng
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
| | - Dapeng Wang
- State Key Laboratory of Polymer Physics and ChemistryChangchun Institute of Applied ChemistryChinese Academy of Sciences Changchun Jilin 130022 China
| | - Wei Tian
- Shaanxi Key Laboratory of Macromolecular Science and TechnologyMOE Key Laboratory of Material Physics and Chemistry under Extraordinary ConditionsSchool of Chemistry and Chemical EngineeringNorthwestern Polytechnical University Xi'an 710072 China
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Ferretti A, d’Ischia M, Prampolini G. Benchmarking Cation−π Interactions: Assessment of Density Functional Theory and Möller–Plesset Second-Order Perturbation Theory Calculations with Optimized Basis Sets (mp2mod) for Complexes of Benzene, Phenol, and Catechol with Na+, K+, Rb+, and Cs+. J Phys Chem A 2020; 124:3445-3459. [DOI: 10.1021/acs.jpca.0c02090] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Alessandro Ferretti
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Marco d’Ischia
- Dipartimento di Scienze Chimiche, Università di Napoli Federico II, I-80126 Napoli, Italy
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Cabaleiro-Lago EM, Rodríguez-Otero J. Curvature and size effects hinder halogen bonds with extended π systems. Phys Chem Chem Phys 2020; 22:21988-22002. [DOI: 10.1039/d0cp03466e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The curvature of aromatic systems strengthens the interaction by the concave face while it weakens by the convex one. Parallel structures are favoured over halogen bonded ones.
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Affiliation(s)
- Enrique M. Cabaleiro-Lago
- Departamento de Química Física
- Facultade de Ciencias
- Universidade de Santiago de Compostela
- Campus de Lugo
- Av. Alfonso X El Sabio
| | - Jesús Rodríguez-Otero
- Departamento de Química Física
- Facultade de Química
- Universidade de Santiago de Compostela
- 15782 Santiago de Compostela
- Spain
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10
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Singh S, Sunoj RB. Computational asymmetric catalysis: On the origin of stereoselectivity in catalytic reactions. ADVANCES IN PHYSICAL ORGANIC CHEMISTRY 2019. [DOI: 10.1016/bs.apoc.2019.07.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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11
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Cabaleiro-Lago EM, Rodríguez-Otero J. On the Nature of σ-σ, σ-π, and π-π Stacking in Extended Systems. ACS OMEGA 2018; 3:9348-9359. [PMID: 31459068 PMCID: PMC6645327 DOI: 10.1021/acsomega.8b01339] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Accepted: 07/27/2018] [Indexed: 05/30/2023]
Abstract
Stacking interactions have been evaluated, employing computational methods, in dimers formed by analogous aliphatic and aromatic species of increasing size. Changes in stability as the systems become larger are mostly controlled by the balance of increasing repulsion and dispersion contributions, while electrostatics plays a secondary but relevant role. The interaction energy increases as the size of the system grows, but it does much faster in π-π dimers than in σ-π complexes and more remarkably than in σ-σ dimers. The main factor behind the larger stability of aromatic dimers compared to complexes containing aliphatic molecules is related to changes in the properties of the aromatic systems due to electron delocalization leading to larger dispersion contributions. Besides, an extra stabilization in π-π complexes is due to the softening of the repulsive wall in aromatic species that allows the molecules to come closer.
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Affiliation(s)
- Enrique M. Cabaleiro-Lago
- Facultade
de Ciencias (Dpto. de Química Física), Universidade de Santiago de Compostela, Campus de Lugo. Avda. Alfonso X El Sabio s/n, 27002 Lugo, Galicia, Spain
| | - Jesús Rodríguez-Otero
- CIQUS
and Facultade de Química (Dpto. de Química Física), Universidade de Santiago de Compostela, 15782 Santiago
de Compostela, Galicia, Spain
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12
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Della TD, Suresh CH. Sumanene: an efficient π-bowl for dihydrogen storage. Phys Chem Chem Phys 2018; 20:6227-6235. [DOI: 10.1039/c7cp07000d] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The outstanding ability of sumanene, its anionic and dianionic forms and sumanene–M+ion-pair complexes (M = Li, Na, K) to bind dihydrogen has been revealed using density functional theory calculations pointing out that these systems could be employed for developing new H2storage systems.
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Affiliation(s)
- Therese Davis Della
- Chemical Sciences and Technology Division, CSIR – National Institute for Interdisciplinary Science and Technology
- Thiruvananthapuram
- India
- Academy of Scientific & Innovative Research (AcSIR)
- India
| | - Cherumuttathu H. Suresh
- Chemical Sciences and Technology Division, CSIR – National Institute for Interdisciplinary Science and Technology
- Thiruvananthapuram
- India
- Academy of Scientific & Innovative Research (AcSIR)
- India
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13
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Dang JS, Wang WW, Zhao X, Nagase S. Concave binding of cationic Li to quadrannulene. Phys Chem Chem Phys 2017; 19:20773-20777. [DOI: 10.1039/c7cp02512b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Concave binding of cationic Li to quadrannulene and its influence on buckybowl functionalization are introduced using DFT calculations.
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Affiliation(s)
- Jing-Shuang Dang
- Institute for Chemical Physics & Department of Chemistry
- School of Science
- Xi'an Jiaotong University
- Xi'an 710049
- China
| | - Wei-Wei Wang
- Institute for Chemical Physics & Department of Chemistry
- School of Science
- Xi'an Jiaotong University
- Xi'an 710049
- China
| | - Xiang Zhao
- Institute for Chemical Physics & Department of Chemistry
- School of Science
- Xi'an Jiaotong University
- Xi'an 710049
- China
| | - Shigeru Nagase
- Fukui Institute for Fundamental Chemistry
- Kyoto University
- Kyoto 606-8103
- Japan
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