Analyzing cadmium-phytochelatin2 complexes in plant using terahertz and circular dichroism information

Phytochelatins are plants' small metal-binding peptides which chelate internal heavy metals to form nontoxic complexes. Detecting the complexes in plants would simplify identification of cultivars with both high tolerance and enrichment capabilities for heavy metals which represent phytoextraction performance. Thus, a terahertz spectroscopy combined with density functional theory, chemometrics and circular dichroism was used for characterization of phytochelatin2 (PC₂), Cd-PC₂ mixture standards, and pak choi (Brassica chinensis) leaves as a plant model. Results showed PC₂ chelates Cd²⁺ in a 2:1 ratio to form Cd(PC₂)₂ complex; Cd connected to thoils of PC₂ and changed β-turn and random coil of PC₂ peptide chain to β-Sheet which presented as terahertz vibrations of PC₂ around 1.03 and 1.71 THz being suppressed; the best models for detecting the complex in pak choi were obtained by partial least squares regression modeling combined with successive projections algorithm selection; the models used PC₂ as a natural probe for visualizing and quantifying chelated Cd in pak choi leaf and achieved a limit of detection up to 1.151 ppm. This study suggested that terahertz information of the heavy metal-PCs complexes is qualified for representing a simpler alternative to classical index for evaluating phytoextraction performance of plant; it provided a general protocol for structure analysis and detection of heavy metal-PCs complexes in plant by terahertz absorbance.

Single Copper Atoms Enhance Photoconductivity in g-C3N4

Graphitic carbon nitride (g-C₃N₄) and its doped analogues have been studied over the past decade in part due to their promising applications in heterogeneous photocatalysis; however, the effect of doping on the photoconductivity is poorly understood. Herein, we investigate Cu doped g-C₃N₄ (Cu-g-C₃N₄) and demonstrate via extended X-ray absorption fine structure that Cu⁺ incorporates as an individual ion. Time-resolved optical pump terahertz probe spectroscopy was utilized to measure the ultrafast photoconductivity in response to a 400 nm pump pulse and showed that the Cu⁺ dopant significantly enhances photoconductivity of the as-prepared powdered sample, which decays within 10 ps. Furthermore, a film preparation technique was applied that further enhanced the photoconductivity and induced a longer-lived photoconductive state with a lifetime on the order of 100 ps. This study provides valuable insight into the ultrafast photoconductivity dynamics of g-C₃N₄ materials, which is essential toward developing efficient g-C₃N₄ photocatalysts.

Screening nature of the van der Waals density functional method: a review and analysis of the many-body physics foundation

We review the screening nature and many-body physics foundation of the van der Waals density functional (vdW-DF) method [Berland Ket al2015Rep. Prog. Phys.78066501], a systematic approach to construct truly nonlocal exchange-correlation energy density functionals. To that end we define and focus on a class of consistent vdW-DF versions that adhere to the Lindhard screening logic of the full method formulation. The consistent-exchange vdW-DF-cx version [Berland K and Hyldgaard P 2014Phys. Rev. B89035412] and its spin extension [Thonhauser Tet al2015Phys. Rev. Lett.115136402] represent the first examples of this class; in general, consistent vdW-DFs reflect a concerted expansion of a formal recast of the adiabatic-connection formula [Hyldgaard Pet al2014Phys. Rev. B90075148], an exponential summation of contributions to the local-field response, and the Dyson equation. We argue that the screening emphasis is essential because the exchange-correlation energy reflects an effective electrodynamics set by a long-range interaction. Two consequences are that (1) there are, in principle, no wiggle room in how one balances exchange and correlation, for example, in vdW-DF-cx, and that (2) consistent vdW-DFs have a formal structure that allows them to incorporate vertex-correction effects, at least in the case of levels that experience recoil-less interactions (for example, near the Fermi surface). We explore the extent to which the strictly nonempirical vdW-DF-cx formulation can serve as a systematic extension of the constraint-based semilocal functionals. For validation, we provide a complete survey of vdW-DF-cx performance for broad molecular processes, for the full set of 55 benchmarks in GMTKN55 [Goerigk Let al2017Phys. Chem. Chem. Phys.1932184] and comparing to the quantum-chemistry calculations that are summarized in that paper. We also provide new vdW-DF-cx results for metal surface energies and work functions that we compare to experiment. Finally, we use the screening insight to separate the vdW-DF nonlocal-correlation term into pure-vdW-interaction and local-field-susceptibility effects and present tools to compute and map the binding signatures.

Metal-Organic Framework Photoconductivity via Time-Resolved Terahertz Spectroscopy

While metal-organic frameworks (MOFs) have been under thorough investigation over the past two decades, photoconductive MOFs are an emerging class of materials with promising applications in light harvesting and photocatalysis. To date, there is not a general method to investigate the photoconductivity of polycrystalline MOF samples as-prepared. Herein, we utilize time-resolved terahertz spectroscopy along with a new sample preparation method to determine the photoconductivity of Zn₂TTFTB, an archetypical conductive MOF, in a noncontact manner. Using this technique, we were able to gain insight into MOF photoconductivity dynamics with subpicosecond resolution, revealing two distinct carrier lifetimes of 0.6 and 31 ps and a long-lived component of several ns. Additionally, we determined the frequency dependent photoconductivity of Zn₂TTFTB which was shown to follow Drude-Smith behavior. Such insights are crucially important with regard to developing the next generation of functional photoconductive MOF materials.

Terahertz Fingerprints of Short-Range Correlations of Disordered Atoms in Diflunisal

This work proposes a terahertz (THz) spectroscopy approach to the investigation of one of the outstanding problems in crystallography-the structure analysis of a crystal with disorder. Form I of diflunisal, in which the two ortho sites on one phenyl ring of diflunisal show occupational disorder, was used for an illustration. THz radiation interacts with the collective vibrations of correlated disorder, thus providing a promising tool to examine the symmetry of short-range correlations of disordered atoms. Through a thorough examination of the selection rule of THz vibrations in which the disordered atoms are involved to different extents, we deduced that only four short-range correlation possibilities of disorder exist and all of them display unambiguous fingerprint peaks in the 50-170 cm^-1 frequency region. We finally proposed an alternating packing model in which the correlation lengths of disorder are on the nanometer scale.

Terahertz Spectroscopy of Tetrameric Peptides

Determining the sequence and structure of peptides is crucial for understanding their structure-property relationships. Among many techniques, structures are typically elucidated using nuclear magnetic resonance spectroscopy and single crystal X-ray diffraction measurements. In this study, we present terahertz time-domain spectroscopy (THz-TDS) as a complementary, nondestructive technique that is sensitive to both the primary and secondary structures of tetrapeptides. Using only a few milligrams of peptide, THz-TDS spectra have been measured, some of which have been supported by density functional theory (DFT) calculations, to distinguish six tetrameric peptides with similar primary and secondary structures.

DFT Computed Dielectric Response and THz Spectra of Organic Co-Crystals and Their Constituent Components

Terahertz (THz) spectroscopy has been put forth as a non-contact, analytical probe to characterize the intermolecular interactions of biologically active molecules, specifically as a way to understand, better develop, and use active pharmaceutical ingredients. An obstacle towards fully utilizing this technique as a probe is the need to couple features in the THz regions to specific vibrational modes and interactions. One solution is to use density functional theory (DFT) methods to assign specific vibrational modes to signals in the THz region, coupling atomistic insights to spectral features. Here, we use open source planewave DFT packages that employ ultrasoft pseudopotentials to assess the infrared (IR) response of organic compounds and complex co-crystal formulations in the solid state, with and without dispersion corrections. We compare our DFT computed lattice parameters and vibrational modes to experiment and comment on how to improve the agreement between theory and modeling to allow for THz spectroscopy to be used as an analytical probe in complex biologically relevant systems.