Theoretical and computational methodologies for understanding coordination self-assembly complexes

This perspective highlights three theoretical and computational methods to capture the coordination self-assembly processes at the molecular level: quantum chemical modeling, molecular dynamics, and reaction network analysis. These methods cover the different scales from the metal-ligand bond to a more global aspect, and approaches that are best suited to understand the coordination self-assembly from different perspectives are introduced. Theoretical and numerical researches based on these methods are not merely ways of interpreting the experimental studies but complementary to them.

Coordination Self-Assembly Processes Revealed by Collaboration of Experiment and Theory: Toward Kinetic Control of Molecular Self-Assembly

The importance of the collaboration of experiment and theory has been proven in many examples in science and technology. Here, such a new example is shown in the investigation of molecular self-assembly process, which is a complicated multi-step chemical reaction occurring in the reaction network composed of a huge number of intermediates. An experimental method, QASAP (quantitative analysis of self-assembly process), developed by us and a numerical approach, NASAP (numerical analysis of self-assembly process), that analyzes the experimental data obtained by QASAP to draw detail molecular self-assembly pathways, which was also developed by us, are introduced, and their application to the investigation of Pd(II)-mediated coordination assemblies are presented. Further, the possibility of the prediction of the outcomes of molecular self-assembly by varying the reaction conditions is also demonstrated. Finally, a future direction in the field of artificial molecular self-assembly based on pathway-dependent self-assembly, that is, kinetic control of molecular self-assembly is discussed.

Supramolecular nanostructures constructed by rod-coil molecular isomers: effect of rod sequences on molecular assembly

Coil-rod-coil molecules, composed of flexible oligoether chains and conjugated rod blocks, have a well-known ability to produce various nanostructures in bulk and in aqueous solution. Herein we report the synthesis and self-assembly of coil-rod-coil molecules based on the sequence of the rod building block and the type of oligoether coil chain. These molecules consist of conjugated rod segments, which are composed of biphenyl, terphenyl, and acetylenic bonds, with chiral oligoether chains as flexible coil segments. The experimental results imply that the sequence of the rod segments markedly influences the self-assembled nanostructures of coil-rod-coil molecules in the bulk state, and that the type of coil chain strongly affects the morphology of the supramolecular nanoassemblies of these molecules in aqueous solution. In the bulk state, molecules 1a and 1b, which contain biphenyl units connected to the end of the coil segments self-organize into a hexagonal perforated lamellar phase, and oblique columnar and body-centred tetragonal structures, respectively. However, molecules 2a and 2b bearing terphenyl units linked to the end of the coil segments self-assemble into lamellar, hexagonal perforated lamellar and hexagonal columnar structures. In aqueous solution, rod-coil molecular isomers with linear chiral oligoether chains self-assemble into helical nanofibres of various lengths. Meanwhile, isomers with chiral oligoether dendron chains self-organize into sheet-like nanoribbons of different sizes.

A kinetics study of ligand substitution reaction on dinuclear platinum complexes: Stochastic versus deterministic approach

The kinetics on a basic ligand substitution reaction on dinuclear platinum complexes [Pt(PEt₃ )₂ PhPt(PEt₃ )₂ ]²⁺ and [Pt(PEt₃ )₂ PhCOPhPt(PEt₃ )₂ ]²⁺ , with the ligands pyridine and 3-chloropyridine, is studied. This is a fundamental step in a self-assembly, and the time evolution has been observed with a new experimental technique, QASAP (quantitative analysis of self-assembly process), which is recently developed by Hiraoka's group. As a result of numerical calculations based on master equation, we succeed in specifying the reaction rate constants with a simple reaction model. In addition, the time evolutions of all the intermediate components produced and consumed in chemical reaction are revealed, including those unobserved in the experiments. The convergence behavior of the existence ratios of specific chemical species calculated with the stochastic algorithm method is compared with those obtained from deterministic formalism based on rate equations, revealing a clear dependence on the number of constituent molecules. © 2018 Wiley Periodicals, Inc.