1
|
Kronenberg J, Chu S, Olsen A, Britton D, Halvorsen L, Guo S, Lakshmi A, Chen J, Kulapurathazhe MJ, Baker CA, Wadsworth BC, Van Acker CJ, Lehman JG, Otto TC, Renfrew PD, Bonneau R, Montclare JK. Computational Design of Phosphotriesterase Improves V-Agent Degradation Efficiency. ChemistryOpen 2024; 13:e202300263. [PMID: 38426687 PMCID: PMC11230934 DOI: 10.1002/open.202300263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Indexed: 03/02/2024] Open
Abstract
Organophosphates (OPs) are a class of neurotoxic acetylcholinesterase inhibitors including widely used pesticides as well as nerve agents such as VX and VR. Current treatment of these toxins relies on reactivating acetylcholinesterase, which remains ineffective. Enzymatic scavengers are of interest for their ability to degrade OPs systemically before they reach their target. Here we describe a library of computationally designed variants of phosphotriesterase (PTE), an enzyme that is known to break down OPs. The mutations G208D, F104A, K77A, A80V, H254G, and I274N broadly improve catalytic efficiency of VX and VR hydrolysis without impacting the structure of the enzyme. The mutation I106 A improves catalysis of VR and L271E abolishes activity, likely due to disruptions of PTE's structure. This study elucidates the importance of these residues and contributes to the design of enzymatic OP scavengers with improved efficiency.
Collapse
Affiliation(s)
- Jacob Kronenberg
- Department of Chemical and Biomolecular EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
| | - Stanley Chu
- Department of Chemical and Biomolecular EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
| | - Andrew Olsen
- Department of Chemical and Biomolecular EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
| | - Dustin Britton
- Department of Chemical and Biomolecular EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
| | - Leif Halvorsen
- Center for Genomics and Systems BiologyNew York UniversityNew YorkNew YorkUnited States
- Center for Computational BiologyFlatiron InstituteNew YorkNew YorkUnited States
| | - Shengbo Guo
- Department of Chemical and Biomolecular EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
| | - Ashwitha Lakshmi
- Department of Chemical and Biomolecular EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
| | - Jason Chen
- Department of Chemical and Biomolecular EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
| | - Maria Jinu Kulapurathazhe
- Department of Chemical and Biomolecular EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
| | - Cetara A. Baker
- Medical Toxicology Research DivisionU.S. Army Medical Research Institute of Chemical DefenseAberdeen Proving GroundMarylandUnited States
| | - Benjamin C. Wadsworth
- Medical Toxicology Research DivisionU.S. Army Medical Research Institute of Chemical DefenseAberdeen Proving GroundMarylandUnited States
| | - Cynthia J. Van Acker
- Medical Toxicology Research DivisionU.S. Army Medical Research Institute of Chemical DefenseAberdeen Proving GroundMarylandUnited States
| | - John G. Lehman
- Medical Toxicology Research DivisionU.S. Army Medical Research Institute of Chemical DefenseAberdeen Proving GroundMarylandUnited States
| | - Tamara C. Otto
- Medical Toxicology Research DivisionU.S. Army Medical Research Institute of Chemical DefenseAberdeen Proving GroundMarylandUnited States
| | - P. Douglas Renfrew
- Center for Genomics and Systems BiologyNew York UniversityNew YorkNew YorkUnited States
- Center for Computational BiologyFlatiron InstituteNew YorkNew YorkUnited States
| | - Richard Bonneau
- Center for Genomics and Systems BiologyNew York UniversityNew YorkNew YorkUnited States
- Center for Computational BiologyFlatiron InstituteNew YorkNew YorkUnited States
| | - Jin Kim Montclare
- Department of Chemical and Biomolecular EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
- Department of BiomaterialsNew York University College of DentistryNew YorkNew YorkUnited States
- Department of RadiologyNew York University Grossman School of MedicineNew YorkNew YorkUnited States
- Department of Biomedical EngineeringNew York University Tandon School of EngineeringBrooklynNew YorkUnited States
- Department of ChemistryNew York UniversityNew YorkNew YorkUnited States
| |
Collapse
|
2
|
Kronenberg J, Britton D, Halvorsen L, Chu S, Kulapurathazhe MJ, Chen J, Lakshmi A, Renfrew PD, Bonneau R, Montclare JK. Supercharged Phosphotriesterase for improved Paraoxon activity. Protein Eng Des Sel 2024; 37:gzae015. [PMID: 39292622 PMCID: PMC11436286 DOI: 10.1093/protein/gzae015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Revised: 08/31/2024] [Accepted: 09/17/2024] [Indexed: 09/20/2024] Open
Abstract
Phosphotriesterases (PTEs) represent a class of enzymes capable of efficient neutralization of organophosphates (OPs), a dangerous class of neurotoxic chemicals. PTEs suffer from low catalytic activity, particularly at higher temperatures, due to low thermostability and low solubility. Supercharging, a protein engineering approach via selective mutation of surface residues to charged residues, has been successfully employed to generate proteins with increased solubility and thermostability by promoting charge-charge repulsion between proteins. We set out to overcome the challenges in improving PTE activity against OPs by employing a computational protein supercharging algorithm in Rosetta. Here, we discover two supercharged PTE variants, one negatively supercharged (with -14 net charge) and one positively supercharged (with +12 net charge) and characterize them for their thermodynamic stability and catalytic activity. We find that positively supercharged PTE possesses slight but significant losses in thermostability, which correlates to losses in catalytic efficiency at all temperatures, whereas negatively supercharged PTE possesses increased catalytic activity across 25°C-55°C while offering similar thermostability characteristic to the parent PTE. The impact of supercharging on catalytic efficiency will inform the design of shelf-stable PTE and criteria for enzyme engineering.
Collapse
Affiliation(s)
- Jacob Kronenberg
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Dustin Britton
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Leif Halvorsen
- Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA
| | - Stanley Chu
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Maria Jinu Kulapurathazhe
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Jason Chen
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - Ashwitha Lakshmi
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
| | - P Douglas Renfrew
- Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA
| | - Richard Bonneau
- Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA
- Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York 10010, USA
- Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, New York 10009, USA
| | - Jin Kim Montclare
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, New York 11201, USA
- Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, New York 10016, USA
- Department of Chemistry, New York University, New York, New York 10012, USA
- Department of Biomaterials, New York University College of Dentistry, New York, New York 10010, USA
- Department of Biomedical Engineering, New York University, New York, NY 11201, USA
| |
Collapse
|
3
|
Chen J, Webb J, Shariati K, Guo S, Montclare JK, McArt S, Ma M. Pollen-inspired enzymatic microparticles to reduce organophosphate toxicity in managed pollinators. NATURE FOOD 2021; 2:339-347. [PMID: 37117728 DOI: 10.1038/s43016-021-00282-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Accepted: 04/20/2021] [Indexed: 04/30/2023]
Abstract
Pollinators support the production of the leading food crops worldwide. Organophosphates are a heavily used group of insecticides that pollinators can be exposed to, especially during crop pollination. Exposure to lethal or sublethal doses can impair fitness of wild and managed bees, risking pollination quality and food security. Here we report a low-cost, scalable in vivo detoxification strategy for organophosphate insecticides involving encapsulation of phosphotriesterase (OPT) in pollen-inspired microparticles (PIMs). We developed uniform and consumable PIMs capable of loading OPT at 90% efficiency and protecting OPT from degradation in the pH of a bee gut. Microcolonies of Bombus impatiens fed malathion-contaminated pollen patties demonstrated 100% survival when fed OPT-PIMs but 0% survival with OPT alone, or with plain sucrose within five and four days, respectively. Thus, the detrimental effects of malathion were eliminated when bees consumed OPT-PIMs. This design presents a versatile treatment that can be integrated into supplemental feeds such as pollen patties or dietary syrup for managed pollinators to reduce risk of organophosphate insecticides.
Collapse
Affiliation(s)
- Jing Chen
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA
| | - James Webb
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA
| | - Kaavian Shariati
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA
| | - Shengbo Guo
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, NY, USA
| | - Jin-Kim Montclare
- Department of Chemical and Biomolecular Engineering, New York University Tandon School of Engineering, Brooklyn, NY, USA
| | - Scott McArt
- Department of Entomology, Cornell University, Ithaca, NY, USA
| | - Minglin Ma
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA.
| |
Collapse
|
4
|
Katyal P, Chu S, Montclare JK. Enhancing organophosphate hydrolase efficacy via protein engineering and immobilization strategies. Ann N Y Acad Sci 2020; 1480:54-72. [PMID: 32814367 DOI: 10.1111/nyas.14451] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 06/21/2020] [Accepted: 07/07/2020] [Indexed: 01/30/2023]
Abstract
Organophosphorus compounds (OPs), developed as pesticides and chemical warfare agents, are extremely toxic chemicals that pose a public health risk. Of the different detoxification strategies, organophosphate-hydrolyzing enzymes have attracted much attention, providing a potential route for detoxifying those exposed to OPs. Phosphotriesterase (PTE), also known as organophosphate hydrolase (OPH), is one such enzyme that has been extensively studied as a catalytic bioscavenger. In this review, we will discuss the protein engineering of PTE aimed toward improving the activity and stability of the enzyme. In order to make enzyme utilization in OP detoxification more favorable, enzyme immobilization provides an effective means to increase enzyme activity and stability. Here, we present several such strategies that enhance the storage and operational stability of PTE/OPH.
Collapse
Affiliation(s)
- Priya Katyal
- Department of Chemical and Biomolecular Engineering, New York University, Tandon School of Engineering, Brooklyn, New York
| | - Stanley Chu
- Department of Chemical and Biomolecular Engineering, New York University, Tandon School of Engineering, Brooklyn, New York
| | - Jin Kim Montclare
- Department of Chemical and Biomolecular Engineering, New York University, Tandon School of Engineering, Brooklyn, New York.,Department of Radiology, New York University Langone Health, New York, New York.,Department of Biomaterials, New York University College of Dentistry, New York, New York.,Department of Chemistry, New York University, New York, New York
| |
Collapse
|