Utilization of chromic polydiacetylene assemblies as a platform to probe specific binding between drug and RNA

Alkali Metal Salts of 10,12-Pentacosadiynoic Acid and Their Dosimetry Applications

Wide-dose-range 2D radiochromic films for radiotherapy, such as GAFchromic EBT, are based on the lithium salt of 10,12-pentacosadiynoic acid (Li-PCDA) as the photosensitive component. We show that there are two solid forms of Li-PCDA-a monohydrated form A and an anhydrous form B. The form used in commercial GAFchromic films is form A due to its short needle-shaped crystals, which provide favorable coating properties. Form B provides an enhanced photoresponse compared to that of form A, but adopts a long needle crystal morphology, which is difficult to process. The two forms were characterized by powder X-ray diffraction, Fourier transform infrared spectroscopy, CP-MAS ¹³C solid-state NMR spectroscopy, and thermogravimetric analysis. In sum, these data suggest a chelating bridging bidentate coordination mode for the lithium ions. The sodium salt of PCDA (Na-PCDA) is also reported, which is an ionic cocrystal with a formula of Na⁺PCDA^-·3PCDA. The PCDA and PCDA^- ligands display monodentate and bridging bidentate coordination to the sodium ion in contrast to the coordination sphere of the Li-PCDA forms. In contrast to its lithium analogues, Na-PCDA is photostable.

The crystal engineering of radiation-sensitive diacetylene cocrystals and salts

In this work we develop photoreactive cocrystals/salts of a commercially-important diacetylene, 10,12-pentacosadiynoic acid (PCDA, 1) and report the first X-ray crystal structures of PCDA based systems. The topochemical reactivity of the system is modified depending on the coformer used and correlates with the structural parameters. Crystallisation of 1 with 4,4'-azopyridine (2), 4,4'-bipyridyl (3), and trans-1,2-bis(4-pyridyl)ethylene (4) results in unreactive 2 : 1 cocrystals or a salt in the case of 4,4'-bipiperidine (5). However, salt formation with morpholine (6), diethylamine (7), and n-butylamine (8), results in highly photoreactive salts 12·7 and 1·8 whose reactivity can be explained using topochemical criteria. The salt 1·6 is also highly photoreactive and is compared to a model morpholinium butanoate salt. Resonance Raman spectroscopy reveals structural details of the photopolymer including its conformational disorder in comparison to less photoactive alkali metal salts and the extent of solid state conversion can be monitored by CP-MAS NMR spectroscopy. We also report an unusual catalysis in which amine evaporation from photopolymerised PCDA ammonium salts effectively acts as a catalyst for polymerisation of PCDA itself. The new photoreactive salts exhibit more reactivity but decreased conjugation compared to the commercial lithium salt and are of considerable practical potential in terms of tunable colours and greater range in UV, X-ray, and γ-ray dosimetry applications.

3D Printing of Polydiacetylene Photocomposite Materials: Two Wavelengths for Two Orthogonal Chemistries

Polydiacetylene (PDA) materials are appealing and gaining increasing research interest due to their outstanding chromatic transition and fluorescence enhancement effects upon exposure to various environmental stimuli. However, despite the photomask method, there are very few reports about the spatial controllable photopolymerization and subsequent 3D printing of PDA until now. Herein, for the first time, we reported the preparation of PDA photocomposite materials based on polyacrylate through the strategy of dual-wavelength polymerization and orthogonal chemistry. First, diacetylene (DA) monomers were homogeneously dispersed in acrylate resin. Then a violet light emitting diode (LED) (or laser diode) was used for the free radical polymerization of polyacrylate. Finally, UV irradiation was utilized to induce the 1,4-topopolymerization of PDA, which could show a successive blue to purple to red color transition in response to the gradient increment of temperature. Interestingly, instead of photomasks, we applied a 3D printing approach directly to this composite material and fabricated some macroscopic stereo patterns, which also illustrated thermochromic properties. This novel kind of functional photocomposite material would demonstrate a huge application prospect in many potential fields, including colorimetric sensing, information encryption, anticounterfeiting, and so on.

Onsite paper-type colorimetric detector with enhanced sensitivity for alkali ion via polydiacetylene-nanoporous rice husk silica composites

A paper-type colorimetric detector for identifying the degree of alkali ion concentration with the naked eye was fabricated using polydiacetylene/nanoporous rice husk silica (PDA/NP-SiO₂) nanocomposites as a potentially effective, rapid, and facile approach to detect alkali ion in aqueous solution. This study is worth investigating because it has the advantage of visually confirming the alkaline ion in aqueous solution without the aid of other analytical instruments directly at on-site as if pH indicator analysis. The concept of this study is the facile synthetic route of PDA and NP-SiO₂. Nanoporous rice husk silica (NP-SiO₂) with a high specific surface area 450 m²/g was extracted from leached rice husk ash via a sol-gel process and utilized for efficient absorption of alkali ion. PDA was used as a material to differentiate the degree of alkali ion drawing using only the change of color. By compositing these two materials on the surface of filter paper using the spray drying method, the resulting PDA/NP-SiO₂ composites with NP-SiO₂ of the different specific surface areas showed a different change of color indicated by the degree of alkali ions even at a low concentration of less than 122 μm. The composite was further analyzed by UV spectroscopy for a change of color and images for screening depending on the alkali ion concentrations. The color response percentage of the PDA/NP-SiO₂ composites (PDA/449S; S_BET 449.9213 m²/g) was 23.39% at 0.122 mM of NH₄OH. Consequently, the result from this study showed the possibility of sensitively distinguishing the alkali ions ranging from pH 9.86 to pH 11.38 using only the naked eye, brought potential features that can be used as a convenient and facile primary water testing kit in practical applications.

Non-Natural Linker Configuration in 2,6-Dipeptidyl-Anthraquinones Enhances the Inhibition of TAR RNA Binding/Annealing Activities by HIV-1 NC and Tat Proteins

The HIV-1 nucleocapsid (NC) protein represents an excellent molecular target for the development of anti-retrovirals by virtue of its well-characterized chaperone activities, which play pivotal roles in essential steps of the viral life cycle. Our ongoing search for candidates able to impair NC binding/annealing activities led to the identification of peptidyl-anthraquinones as a promising class of nucleic acid ligands. Seeking to elucidate the inhibition determinants and increase the potency of this class of compounds, we have now explored the effects of chirality in the linker connecting the planar nucleus to the basic side chains. We show here that the non-natural linker configuration imparted unexpected TAR RNA targeting properties to the 2,6-peptidyl-anthraquinones and significantly enhanced their potency. Even if the new compounds were able to interact directly with the NC protein, they manifested a consistently higher affinity for the TAR RNA substrate and their TAR-binding properties mirrored their ability to interfere with NC-TAR interactions. Based on these findings, we propose that the viral Tat protein, sharing the same RNA substrate but acting in distinct phases of the viral life cycle, constitutes an additional druggable target for this class of peptidyl-anthraquinones. The inhibition of Tat-TAR interaction for the test compounds correlated again with their TAR-binding properties, while simultaneously failing to demonstrate any direct Tat-binding capabilities. These considerations highlighted the importance of TAR RNA in the elucidation of their inhibition mechanism, rather than direct protein inhibition. We have therefore identified anti-TAR compounds with dual in vitro inhibitory activity on different viral proteins, demonstrating that it is possible to develop multitarget compounds capable of interfering with processes mediated by the interactions of this essential RNA domain of HIV-1 genome with NC and Tat proteins.