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Joseph J, Spantzel L, Ali M, Moonnukandathil Joseph D, Unger S, Reglinski K, Krafft C, Müller AD, Eggeling C, Heintzmann R, Börsch M, Press AT, Täuber D. Nanoscale chemical characterization of secondary protein structure of F-Actin using mid-infrared photoinduced force microscopy (PiF-IR). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 306:123612. [PMID: 37931494 DOI: 10.1016/j.saa.2023.123612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 08/15/2023] [Accepted: 11/01/2023] [Indexed: 11/08/2023]
Abstract
The recently developed photoinduced force microscopy for mid-infrared (PiF-IR) offers high spectral resolution in combination with surface sensitivity and a spatial resolution in the range of a few nanometers. Although PiF-IR has primarily been applied to polymer materials, this technology presents significant potential for the chemical characterization of cellular structures approaching single-molecule sensitivity. We applied PiF-IR to differently polymerized F-Actin samples finding general agreement with FTIR spectra from the same samples. Single PiF-IR spectra of F-Actin show variations in the amide I band spectral region, which is related to secondary protein structure. Local variations are also seen in PiF-IR hyperspectra in this region. Such high sensitivity is a necessary requirement for discriminating Actin organization into bundles and other networks in cells and tissue. We applied PiF-IR to mouse liver tissue ex vivo. Single-frequency PiF-IR scans at three different IR frequencies show significant variations in local contrast. However, the presence of other proteins and the unique spatial resolution of PiF-IR pose a challenge to interpreting and validating such data. Careful design of model systems and further theoretical understanding of PiF-IR data far from bulk averages are needed to fully unfold the potential of PiF-IR for high-resolution chemical investigation in the Life Sciences.
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Affiliation(s)
- Jesvin Joseph
- Leibniz Institute of Photonic Technology, Department of Microscopy, Jena, Germany; Friedrich Schiller University Jena, Institute of Physical Chemistry & Abbe Center of Photonics, Jena, Germany
| | - Lukas Spantzel
- Jena University Hospital, Single-Molecule Microscopy Group, Jena, Germany; Friedrich Schiller University Jena, Faculty of Medicine, Jena, Germany
| | - Maryam Ali
- Friedrich Schiller University Jena, Institute of Physical Chemistry & Abbe Center of Photonics, Jena, Germany
| | - Dijo Moonnukandathil Joseph
- Leibniz Institute of Photonic Technology, Department of Microscopy, Jena, Germany; Friedrich Schiller University Jena, Institute of Physical Chemistry & Abbe Center of Photonics, Jena, Germany
| | - Sebastian Unger
- Leibniz Institute of Photonic Technology, Department of Microscopy, Jena, Germany; Friedrich Schiller University Jena, Institute of Physical Chemistry & Abbe Center of Photonics, Jena, Germany
| | - Katharina Reglinski
- Leibniz Institute of Photonic Technology, Biophysical Imaging, Jena, Germany; Friedrich Schiller University Jena, Institute for Applied Optics and Biophysics, Jena, Germany
| | - Christoph Krafft
- Leibniz Institute of Photonic Technology, Department of Spectroscopy & Imaging, Jena, Germany
| | | | - Christian Eggeling
- Leibniz Institute of Photonic Technology, Biophysical Imaging, Jena, Germany; Friedrich Schiller University Jena, Institute for Applied Optics and Biophysics, Jena, Germany
| | - Rainer Heintzmann
- Leibniz Institute of Photonic Technology, Department of Microscopy, Jena, Germany; Friedrich Schiller University Jena, Institute of Physical Chemistry & Abbe Center of Photonics, Jena, Germany
| | - Michael Börsch
- Jena University Hospital, Single-Molecule Microscopy Group, Jena, Germany; Friedrich Schiller University Jena, Faculty of Medicine, Jena, Germany
| | - Adrian T Press
- Friedrich Schiller University Jena, Faculty of Medicine, Jena, Germany; Jena University Hospital, Department of Anesthesiology and Intensive Care Medicine, Jena, Germany
| | - Daniela Täuber
- Leibniz Institute of Photonic Technology, Department of Microscopy, Jena, Germany; Friedrich Schiller University Jena, Institute of Physical Chemistry & Abbe Center of Photonics, Jena, Germany; Friedrich Schiller University Jena, Institute of Solid State Physics, Jena, Germany.
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2
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V. D. dos Santos AC, Hondl N, Ramos-Garcia V, Kuligowski J, Lendl B, Ramer G. AFM-IR for Nanoscale Chemical Characterization in Life Sciences: Recent Developments and Future Directions. ACS MEASUREMENT SCIENCE AU 2023; 3:301-314. [PMID: 37868358 PMCID: PMC10588935 DOI: 10.1021/acsmeasuresciau.3c00010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 05/30/2023] [Accepted: 05/30/2023] [Indexed: 10/24/2023]
Abstract
Despite the ubiquitous absorption of mid-infrared (IR) radiation by virtually all molecules that belong to the major biomolecules groups (proteins, lipids, carbohydrates, nucleic acids), the application of conventional IR microscopy to the life sciences remained somewhat limited, due to the restrictions on spatial resolution imposed by the diffraction limit (in the order of several micrometers). This issue is addressed by AFM-IR, a scanning probe-based technique that allows for chemical analysis at the nanoscale with resolutions down to 10 nm and thus has the potential to contribute to the investigation of nano and microscale biological processes. In this perspective, in addition to a concise description of the working principles and operating modes of AFM-IR, we present and evaluate the latest key applications of AFM-IR to the life sciences, summarizing what the technique has to offer to this field. Furthermore, we discuss the most relevant current limitations and point out potential future developments and areas for further application for fruitful interdisciplinary collaboration.
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Affiliation(s)
| | - Nikolaus Hondl
- Institute
of Chemical Technologies and Analytics, TU Wien, Getreidemarkt 9, 1060 Vienna, Austria
| | - Victoria Ramos-Garcia
- Health
Research Institute La Fe, Avenida Fernando Abril Martorell 106, 46026 Valencia, Spain
| | - Julia Kuligowski
- Health
Research Institute La Fe, Avenida Fernando Abril Martorell 106, 46026 Valencia, Spain
| | - Bernhard Lendl
- Institute
of Chemical Technologies and Analytics, TU Wien, Getreidemarkt 9, 1060 Vienna, Austria
| | - Georg Ramer
- Institute
of Chemical Technologies and Analytics, TU Wien, Getreidemarkt 9, 1060 Vienna, Austria
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3
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Huang W, Hua MZ, Li S, Chen K, Lu X, Wu D. Application of atomic force microscopy in the characterization of fruits and vegetables and associated substances toward improvement in quality, preservation, and processing: nanoscale structure and mechanics perspectives. Crit Rev Food Sci Nutr 2023:1-29. [PMID: 37585698 DOI: 10.1080/10408398.2023.2242944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/18/2023]
Abstract
Fruits and vegetables are essential horticultural crops for humans. The quality of fruits and vegetables is critical in determining their nutritional value and edibility, which are decisive to their commercial value. Besides, it is also important to understand the changes in key substances involved in the preservation and processing of fruits and vegetables. Atomic force microscopy (AFM), a powerful technique for investigating biological surfaces, has been widely used to characterize the quality of fruits and vegetables and the substances involved in their preservation and processing from the perspective of nanoscale structure and mechanics. This review summarizes the applications of AFM to investigate the texture, appearance, and nutrients of fruits and vegetables based on structural imaging and force measurements. Additionally, the review highlights the application of AFM in characterizing the morphological and mechanical properties of nanomaterials involved in preserving and processing fruits and vegetables, including films and coatings for preservation, bioactive compounds for processing purposes, nanofiltration membrane for concentration, and nanoencapsulation for delivery of bioactive compounds. Furthermore, the strengths and weaknesses of AFM for characterizing the quality of fruits and vegetables and the substances involved in their preservation and processing are examined, followed by a discussion on the prospects of AFM in this field.
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Affiliation(s)
- Weinan Huang
- College of Agriculture and Biotechnology/Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology/Key Laboratory of Ministry of Agriculture and Rural Affairs of Biology and Genetic Improvement of Horticultural Crops (Growth and Development), Zhejiang University, Hangzhou, P. R. China
- Zhongyuan Institute, Zhejiang University, Zhengzhou, P. R. China
| | - Marti Z Hua
- Department of Food Science and Agricultural Chemistry, McGill University, Quebec, Canada
| | - Shenmiao Li
- Department of Food Science and Agricultural Chemistry, McGill University, Quebec, Canada
| | - Kunsong Chen
- College of Agriculture and Biotechnology/Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology/Key Laboratory of Ministry of Agriculture and Rural Affairs of Biology and Genetic Improvement of Horticultural Crops (Growth and Development), Zhejiang University, Hangzhou, P. R. China
- Zhongyuan Institute, Zhejiang University, Zhengzhou, P. R. China
| | - Xiaonan Lu
- Department of Food Science and Agricultural Chemistry, McGill University, Quebec, Canada
| | - Di Wu
- College of Agriculture and Biotechnology/Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology/Key Laboratory of Ministry of Agriculture and Rural Affairs of Biology and Genetic Improvement of Horticultural Crops (Growth and Development), Zhejiang University, Hangzhou, P. R. China
- Zhongyuan Institute, Zhejiang University, Zhengzhou, P. R. China
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4
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Hilzenrat G, Gill ET, McArthur SL. Imaging approaches for monitoring three-dimensional cell and tissue culture systems. JOURNAL OF BIOPHOTONICS 2022; 15:e202100380. [PMID: 35357086 DOI: 10.1002/jbio.202100380] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2021] [Revised: 03/27/2022] [Accepted: 03/28/2022] [Indexed: 06/14/2023]
Abstract
The past decade has seen an increasing demand for more complex, reproducible and physiologically relevant tissue cultures that can mimic the structural and biological features of living tissues. Monitoring the viability, development and responses of such tissues in real-time are challenging due to the complexities of cell culture physical characteristics and the environments in which these cultures need to be maintained in. Significant developments in optics, such as optical manipulation, improved detection and data analysis, have made optical imaging a preferred choice for many three-dimensional (3D) cell culture monitoring applications. The aim of this review is to discuss the challenges associated with imaging and monitoring 3D tissues and cell culture, and highlight topical label-free imaging tools that enable bioengineers and biophysicists to non-invasively characterise engineered living tissues.
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Affiliation(s)
- Geva Hilzenrat
- Bioengineering Engineering Group, School of Science, Computing and Engineering Technologies, Swinburne University of Technology, Hawthorn, Victoria, Australia
- Biomedical Manufacturing, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Clayton, Victoria, Australia
| | - Emma T Gill
- Bioengineering Engineering Group, School of Science, Computing and Engineering Technologies, Swinburne University of Technology, Hawthorn, Victoria, Australia
- Biomedical Manufacturing, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Clayton, Victoria, Australia
| | - Sally L McArthur
- Bioengineering Engineering Group, School of Science, Computing and Engineering Technologies, Swinburne University of Technology, Hawthorn, Victoria, Australia
- Biomedical Manufacturing, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Clayton, Victoria, Australia
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5
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Kumar SR, Hsu YH, Vi TTT, Pang JHS, Lee YC, Hsieh CH, Lue SJ. Graphene Oxide-Induced Protein Conformational Change in Nasopharyngeal Carcinoma Cells: A Joint Research on Cytotoxicity and Photon Therapy. MATERIALS (BASEL, SWITZERLAND) 2021; 14:1396. [PMID: 33805683 PMCID: PMC8001416 DOI: 10.3390/ma14061396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 03/05/2021] [Accepted: 03/10/2021] [Indexed: 11/16/2022]
Abstract
The objectives of this work aim to investigate the interaction and cytotoxicity between nanometric graphene oxide (GO) and nasopharyngeal carcinoma cells (NPC-BM1), and possible application in photon therapy. GO nanosheets were obtained in the size range of 100-200 nm, with a negative surface charge. This nanometric GO exhibited a limited (<10%) cytotoxicity effect and no significant dimensional change on NPC-BM1 cells in the tested GO concentration range (0.1-10 µg·mL-1). However, the secondary protein structure was modified in the GO-treated NPC-BM1 cells, as determined through synchrotron radiation-based Fourier transform infrared microspectroscopy (SR-FTIRM) mapping. To further study the cellular response of GO-treated NPC-BM1 cancer cells at low GO concentration (0.1 µg·mL-1), photon radiation was applied with increasing doses, ranging from 2 to 8 Gy. The low radiation energy (<5 Gy) did not cause significant cell mortality (5-7%). Increasing the radiation energy to 6-8 Gy accelerated cell apoptosis rate, especially in the GO-treated NPC-BM1 cells (27%). This necrosis may be due to GO-induced conformational changes in protein and DNA/RNA, resulting in cell vulnerability under photon radiation. The findings of the present work demonstrate the potential biological applicability of nanometric GO in different areas, such as targeted drug delivery, cellular imaging, and radiotherapy, etc.
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Affiliation(s)
- Selvaraj Rajesh Kumar
- Department of Chemical and Materials Engineering, Chang Gung University, Wenhua 1st Road, Guishan, Taoyuan 333, Taiwan; (S.R.K.); (T.T.T.V.)
| | - Ya-Hui Hsu
- Graduate Institute of Clinical Medical Sciences, Chang Gung University, Wenhua 1st Road, Guishan, Taoyuan 333, Taiwan; (Y.-H.H.); (J.-H.S.P.)
| | - Truong Thi Tuong Vi
- Department of Chemical and Materials Engineering, Chang Gung University, Wenhua 1st Road, Guishan, Taoyuan 333, Taiwan; (S.R.K.); (T.T.T.V.)
| | - Jong-Hwei Su Pang
- Graduate Institute of Clinical Medical Sciences, Chang Gung University, Wenhua 1st Road, Guishan, Taoyuan 333, Taiwan; (Y.-H.H.); (J.-H.S.P.)
- Department of Physical Medicine and Rehabilitation, Chang Gung Memorial Hospital, Dinghu Road, Guishan, Taoyuan 333, Taiwan
| | - Yao-Chang Lee
- National Synchrotron Radiation Research Center, Hsin Ann Road, Hsinchu City 300, Taiwan;
| | - Chia-Hsun Hsieh
- Division of Hematology-Oncology, Department of Internal Medicine, New Taipei Municipal TuCheng Hospital, Jincheng Road, New Taipei City 236, Taiwan
- Division of Hematology-Oncology, Department of Internal Medicine, Chang Gung Memorial Hospital at Linkou, Fusing Street, Guishan, Taoyuan 333, Taiwan
- School of Medicine, Chang Gung University, Wenhua 1st Road, Guishan, Taoyuan 333, Taiwan
| | - Shingjiang Jessie Lue
- Department of Chemical and Materials Engineering, Chang Gung University, Wenhua 1st Road, Guishan, Taoyuan 333, Taiwan; (S.R.K.); (T.T.T.V.)
- Division of Join Reconstruction, Department of Orthopedics, Chang Gung Medical Center at Linkou, Fusing Street, Guishan, Taoyuan 333, Taiwan
- Department of Safety, Health and Environment Engineering, Ming-Chi University of Technology, Gongzhuan Road, Taishan, New Taipei City 243, Taiwan
- Center for Environmental Sustainability and Human Health, Ming-Chi University of Technology, Gongzhuan Road, Taishan, New Taipei City 243, Taiwan
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6
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Samolis PD, Langley D, O’Reilly BM, Oo Z, Hilzenrat G, Erramilli S, Sgro AE, McArthur S, Sander MY. Label-free imaging of fibroblast membrane interfaces and protein signatures with vibrational infrared photothermal and phase signals. BIOMEDICAL OPTICS EXPRESS 2021; 12:303-319. [PMID: 33520386 PMCID: PMC7818956 DOI: 10.1364/boe.411888] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 12/02/2020] [Accepted: 12/03/2020] [Indexed: 05/19/2023]
Abstract
Label-free vibrational imaging of biological samples has attracted significant interest due to its integration of structural and chemical information. Vibrational infrared photothermal amplitude and phase signal (VIPPS) imaging provide label-free chemical identification by targeting the characteristic resonances of biological compounds that are present in the mid-infrared fingerprint region (3 µm - 12 µm). High contrast imaging of subcellular features and chemical identification of protein secondary structures in unlabeled and labeled fibroblast cells embedded in a collagen-rich extracellular matrix is demonstrated by combining contrast from absorption signatures (amplitude signals) with sensitive detection of different heat properties (lock-in phase signals). We present that the detectability of nano-sized cell membranes is enhanced to well below the optical diffraction limit since the membranes are found to act as thermal barriers. VIPPS offers a novel combination of chemical imaging and thermal diffusion characterization that paves the way towards label-free imaging of cell models and tissues as well as the study of intracellular heat dynamics.
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Affiliation(s)
- Panagis D. Samolis
- Department of Electrical and Computer Engineering, Boston University, Boston, MA 02215, USA
- Photonics Center, Boston University, Boston, MA 02215, USA
| | - Daniel Langley
- Bioengineering Research Group Engineering and Technology, Faculty of Science, Engineering and Technology, Swinburne University of Technology, Hawthorn, Victoria, Australia
- Biomedical Manufacturing, CSIRO Manufacturing, Melbourne, VIC, Australia
| | - Breanna M. O’Reilly
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
- Biological Design Center, Boston University, Boston, MA 02215, USA
| | - Zay Oo
- Bioengineering Research Group Engineering and Technology, Faculty of Science, Engineering and Technology, Swinburne University of Technology, Hawthorn, Victoria, Australia
- Biomedical Manufacturing, CSIRO Manufacturing, Melbourne, VIC, Australia
| | - Geva Hilzenrat
- Bioengineering Research Group Engineering and Technology, Faculty of Science, Engineering and Technology, Swinburne University of Technology, Hawthorn, Victoria, Australia
- Biomedical Manufacturing, CSIRO Manufacturing, Melbourne, VIC, Australia
| | - Shyamsunder Erramilli
- Photonics Center, Boston University, Boston, MA 02215, USA
- Department of Physics, Boston University, Boston, MA 02215, USA
- Division of Materials Science and Engineering, Boston University, Brookline, MA 02446, USA
| | - Allyson E. Sgro
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
- Biological Design Center, Boston University, Boston, MA 02215, USA
- Department of Physics, Boston University, Boston, MA 02215, USA
| | - Sally McArthur
- Bioengineering Research Group Engineering and Technology, Faculty of Science, Engineering and Technology, Swinburne University of Technology, Hawthorn, Victoria, Australia
- Biomedical Manufacturing, CSIRO Manufacturing, Melbourne, VIC, Australia
| | - Michelle Y. Sander
- Department of Electrical and Computer Engineering, Boston University, Boston, MA 02215, USA
- Photonics Center, Boston University, Boston, MA 02215, USA
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
- Division of Materials Science and Engineering, Boston University, Brookline, MA 02446, USA
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7
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V. D. dos Santos AC, Heydenreich R, Derntl C, Mach-Aigner AR, Mach RL, Ramer G, Lendl B. Nanoscale Infrared Spectroscopy and Chemometrics Enable Detection of Intracellular Protein Distribution. Anal Chem 2020; 92:15719-15725. [PMID: 33259186 PMCID: PMC7745202 DOI: 10.1021/acs.analchem.0c02228] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Accepted: 11/16/2020] [Indexed: 02/08/2023]
Abstract
Determination of the intracellular location of proteins is one of the fundamental tasks of microbiology. Conventionally, label-based microscopy and super-resolution techniques are employed. In this work, we demonstrate a new technique that can determine intracellular protein distribution at nanometer spatial resolution. This method combines nanoscale spatial resolution chemical imaging using the photothermal-induced resonance (PTIR) technique with multivariate modeling to reveal the intracellular distribution of cell components. Here, we demonstrate its viability by imaging the distribution of major cellulases and xylanases in Trichoderma reesei using the colocation of a fluorescent label (enhanced yellow fluorescence protein, EYFP) with the target enzymes to calibrate the chemometric model. The obtained partial least squares model successfully shows the distribution of these proteins inside the cell and opens the door for further studies on protein secretion mechanisms using PTIR.
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Affiliation(s)
| | - Rosa Heydenreich
- Institute
of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna 1060, Austria
| | - Christian Derntl
- Institute
of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna 1060, Austria
| | - Astrid R. Mach-Aigner
- Institute
of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna 1060, Austria
| | - Robert L. Mach
- Institute
of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna 1060, Austria
| | - Georg Ramer
- Institute
of Chemical Technologies and Analytics, TU Wien, Vienna 1060, Austria
| | - Bernhard Lendl
- Institute
of Chemical Technologies and Analytics, TU Wien, Vienna 1060, Austria
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8
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In search of the correlation between nanomechanical and biomolecular properties of prostate cancer cells with different metastatic potential. Arch Biochem Biophys 2020; 697:108718. [PMID: 33296690 DOI: 10.1016/j.abb.2020.108718] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2020] [Revised: 11/30/2020] [Accepted: 12/03/2020] [Indexed: 02/07/2023]
Abstract
Nanomechanical properties of living cells, as measured with atomic force microscopy (AFM), are increasingly recognized as criteria that differentiate normal and pathologically altered cells. Locally measured cell elastic properties, described by the parameter known as Young's modulus, are currently proposed as a new diagnostic parameter that can be used at the early stage of cancer detection. In this study, local mechanical properties of normal human prostate (RWPE-1) cells and a range of malignant (22Rv1) and metastatic prostate cells (LNCaP, Du145 and PC3) were investigated. It was found that non-malignant prostate cells are stiffer than cancer cells while the metastatic cells are much softer than malignant cells from the primary tumor site. Next, the biochemical properties of the cells were measured using confocal Raman (RS) and Fourier-transform infrared (FT-IR) spectroscopies to reveal these cells' biochemical composition as malignant transformation proceeds. Nanomechanical and biochemical profiles of five different prostate cell lines were subsequently analyzed using partial least squares regression (PLSR) in order to identify which spectral features of the RS and FT-IR spectra correlate with the cell's elastic properties. The PLSR-based model could predict Young's modulus values based on both RS and FT-IR spectral information. These outcomes show not only that AFM, RS and FT-IR techniques can be used for discrimination between normal and cancer cells, but also that a linear correlation between mechanical response and biomolecular composition of the cells that undergo malignant transformation can be found. This knowledge broadens our understanding of how prostate cancer cells evolve thorough the multistep process of tumor pathogenesis.
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9
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Quaroni L. Imaging and spectroscopy of domains of the cellular membrane by photothermal-induced resonance. Analyst 2020; 145:5940-5950. [PMID: 32706007 DOI: 10.1039/d0an00696c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We use photothermal induced resonance (PTIR) imaging and spectroscopy, in resonant and non-resonant mode, to study the cytoplasmic membrane and surface of intact cells. Non-resonant PTIR images apparently provide rich details of the cell surface. However, we show that non-resonant image contrast does not arise from the infrared absorption of surface molecules and is instead dominated by the mechanics of tip-sample contact. In contrast, spectra and images of the cellular surface can be selectively obtained by tuning the pulsing structure of the laser to restrict thermal wave penetration to the surface layer. Resonant PTIR images reveal surface structures and domains that range in size from about 20 nm to 1 μm and are associated with the cytoplasmic membrane and its proximity. Resonant PTIR spectra of the cell surface are qualitatively comparable to far-field IR spectra and provide the first selective measurement of the IR absorption spectrum of the cellular membrane of an intact cell. In resonant PTIR images, signal intensity, and therefore contrast, can be ascribed to a variety of factors, including mechanical, thermodynamic and spectroscopic properties of the cellular surface. While PTIR images are difficult to interpret in terms of spectroscopic absorption, they are easy to collect and provide unique contrast mechanisms without any exogenous labelling. As such they provide a new paradigm in cellular imaging and membrane biology and can be used to address a range of critical questions, from the nature of membrane lipid domains to the mechanism of pathogen infection of a host cell.
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Affiliation(s)
- Luca Quaroni
- Department of Physical Chemistry and Electrochemistry, Faculty of Chemistry, Jagiellonian University, 30-387, Kraków, Poland.
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10
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Khanal D, Khatib I, Ruan J, Cipolla D, Dayton F, Blanchard JD, Chan HK, Chrzanowski W. Nanoscale Probing of Liposome Encapsulating Drug Nanocrystal Using Atomic Force Microscopy-Infrared Spectroscopy. Anal Chem 2020; 92:9922-9931. [DOI: 10.1021/acs.analchem.0c01465] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Dipesh Khanal
- Advanced Drug Delivery Group, School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales 2006, Australia
- The University of Sydney, Sydney Nano Institute, Faculty of Medicine and Health, Sydney Pharmacy School, Sydney, New South Wales 2006, Australia
| | - Isra Khatib
- Advanced Drug Delivery Group, School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Juanfang Ruan
- Electron Microscope Unit, Mark Wainwright Analytical Centre, The University of New South Wales, The University of New South Wales, New South Wales 2062, Australia
| | - David Cipolla
- Insmed Corporation, Bridgewater, New Jersey 08807, United States
| | - Francis Dayton
- Aradigm Corporation, Hayward, California 94545, United States
| | | | - Hak-Kim Chan
- Advanced Drug Delivery Group, School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Wojciech Chrzanowski
- The University of Sydney, Sydney Nano Institute, Faculty of Medicine and Health, Sydney Pharmacy School, Sydney, New South Wales 2006, Australia
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11
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Kurouski D, Dazzi A, Zenobi R, Centrone A. Infrared and Raman chemical imaging and spectroscopy at the nanoscale. Chem Soc Rev 2020; 49:3315-3347. [PMID: 32424384 PMCID: PMC7675782 DOI: 10.1039/c8cs00916c] [Citation(s) in RCA: 130] [Impact Index Per Article: 32.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The advent of nanotechnology, and the need to understand the chemical composition at the nanoscale, has stimulated the convergence of IR and Raman spectroscopy with scanning probe methods, resulting in new nanospectroscopy paradigms. Here we review two such methods, namely photothermal induced resonance (PTIR), also known as AFM-IR and tip-enhanced Raman spectroscopy (TERS). AFM-IR and TERS fundamentals will be reviewed in detail together with their recent crucial advances. The most recent applications, now spanning across materials science, nanotechnology, biology, medicine, geology, optics, catalysis, art conservation and other fields are also discussed. Even though AFM-IR and TERS have developed independently and have initially targeted different applications, rapid innovation in the last 5 years has pushed the performance of these, in principle spectroscopically complimentary, techniques well beyond initial expectations, thus opening new opportunities for their convergence. Therefore, subtle differences and complementarity will be highlighted together with emerging trends and opportunities.
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Affiliation(s)
- Dmitry Kurouski
- Department Biochemistry and Biophysics, Texas A&M University, 2128 TAMU, College Station, TX 77843, USA.
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12
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Chan KLA, Lekkas I, Frogley MD, Cinque G, Altharawi A, Bello G, Dailey LA. Synchrotron Photothermal Infrared Nanospectroscopy of Drug-Induced Phospholipidosis in Macrophages. Anal Chem 2020; 92:8097-8107. [PMID: 32396367 DOI: 10.1021/acs.analchem.9b05759] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Synchrotron resonance-enhanced infrared atomic force microscopy (RE-AFM-IR) is a near-field photothermal vibrational nanoprobe developed at Diamond Light Source (DLS), capable of measuring mid-infrared absorption spectra with spatial resolution around 100 nm. The present study reports a first application of synchrotron RE-AFM-IR to interrogate biological soft matter at the subcellular level, in this case, on a cellular model of drug-induced phospholipidosis (DIPL). J774A-1 macrophages were exposed to amiodarone (10 μM) or medium for 24 h and chemically fixed. AFM topography maps revealed amiodarone-treated cells with enlarged cytoplasm and very thin regions corresponding to collapsed vesicles. IR maps of the whole cell were analyzed by exploiting the RE-AFM-IR overall signal, i.e., the integrated RE-AFM-IR signal amplitude versus AFM-derived cell thickness, also on lateral resolution around 100 nm. Results show that vibrational band assignment was possible, and all characteristic peaks for lipids, proteins, and DNA/RNA were identified. Both peak ratio and unsupervised chemometric analysis of RE-AFM-IR nanospectra generated from the nuclear and perinuclear regions of untreated and amiodarone-treated cells showed that the perinuclear region (i.e., cytoplasm) of amiodarone-treated cells had significantly elevated band intensities in the regions corresponding to phosphate and carbonyl groups, indicating detection of phospholipid-rich inclusion bodies typical for cells with DIPL. The results of this study are of importance to demonstrate not only the applicability of Synchrotron RE-AFM-IR to soft biological matters with subcellular spatial resolution but also that the spectral information gathered from an individual submicron sample volume enables chemometric identification of treatment and biochemical differences between mammalian cells.
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Affiliation(s)
- Ka Lung Andrew Chan
- Institute of Pharmaceutical Sciences, School of Cancer and Pharmaceutical Science, King's College London, London SE1 9NH, U.K
| | - Ioannis Lekkas
- Diamond Light Source, Harwell Science and Innovation Campus, Chilton-Didcot OX11 0DE, U.K
| | - Mark D Frogley
- Diamond Light Source, Harwell Science and Innovation Campus, Chilton-Didcot OX11 0DE, U.K
| | - Gianfelice Cinque
- Diamond Light Source, Harwell Science and Innovation Campus, Chilton-Didcot OX11 0DE, U.K
| | - Ali Altharawi
- Institute of Pharmaceutical Sciences, School of Cancer and Pharmaceutical Science, King's College London, London SE1 9NH, U.K
| | - Gianluca Bello
- Institute of Synthetic Bioarchitectures, Department of Nanobiotechnology, University of Natural Resources and Life Sciences, Vienna, Muthgasse 11, 1190 Vienna, Austria
| | - Lea Ann Dailey
- Department of Pharmaceutical Technology and Biopharmacy, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
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13
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Quaroni L. Understanding and Controlling Spatial Resolution, Sensitivity, and Surface Selectivity in Resonant-Mode Photothermal-Induced Resonance Spectroscopy. Anal Chem 2020; 92:3544-3554. [PMID: 32023046 DOI: 10.1021/acs.analchem.9b03468] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Photothermal-induced resonance (PTIR) is increasingly used in the measurement of infrared absorption spectra of submicrometer objects. The technique measures IR absorption spectra by relying on the photothermal effect induced by a rapid pulse of light and the excitation of the resonance spectrum of an AFM cantilever in contact with the sample. In this work, we assess the spatial resolution and depth response of PTIR in resonant mode while systematically varying the pulsing parameters of the excitation laser. We show that resolution is always much better than predicted by existing theoretical models. Higher frequency, longer pulse length, and shorter interval between pulses improve resolution, eventually providing values that are comparable to or even better than tip size. Pulsing parameters also affect the intensity of the signal and the surface selectivity in PTIR images, with higher frequencies providing increased surface selectivity. The observations confirm a difference in signal generation between resonant PTIR and other photothermal techniques that we ascribe to nonlinearity in the PTIR signal. In analogy with optical imaging, we show that PTIR takes advantage of such nonlinearity to perform photothermal measurements that are super-resolved when compared to the resolution allowed by the thermal wavelength. Finally, we show that by controlling the pulsing parameters of the laser we can devise high resolution surface sensitive measurements that do not rely on the use of optical enhancement effects.
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Affiliation(s)
- Luca Quaroni
- Department of Physical Chemistry and Electrochemistry, Faculty of Chemistry, Jagiellonian University, ul. Gronostajowa 2, 30-387 Kraków, Poland
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14
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Quaroni L. Characterization of Intact Eukaryotic Cells with Subcellular Spatial Resolution by Photothermal-Induced Resonance Infrared Spectroscopy and Imaging. Molecules 2019; 24:E4504. [PMID: 31835358 PMCID: PMC6943681 DOI: 10.3390/molecules24244504] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Accepted: 12/03/2019] [Indexed: 12/14/2022] Open
Abstract
Photothermal-induced resonance (PTIR) spectroscopy and imaging with infrared light has seen increasing application in the molecular spectroscopy of biological samples. The appeal of the technique lies in its capability to provide information about IR light absorption at a spatial resolution better than that allowed by light diffraction, typically below 100 nm. In the present work, we tested the capability of the technique to perform measurements with subcellular resolution on intact eukaryotic cells, without drying or fixing. We demonstrate the possibility of obtaining PTIR images and spectra from the nucleus and multiple organelles with high resolution, better than that allowed by diffraction with infrared light. We obtain particularly strong signal from bands typically assigned to acyl lipids and proteins. We also show that while a stronger signal is obtained from some subcellular structures, other large subcellular components provide a weaker or undetectable PTIR response. The mechanism that underlies such variability in response is presently unclear. We propose and discuss different possibilities, addressing thermomechanical, geometrical, and electrical properties of the sample and the presence of cellular water, from which the difference in response may arise.
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Affiliation(s)
- Luca Quaroni
- Faculty of Chemistry, Jagiellonian University, ul. Gronostajowa 2, 30-387 Kraków, Poland; ; Tel.: +48-12-6862520
- Institute of Nuclear Physics, Polish Academy of Sciences, ul. Radzikowskiego 152, 31-342 Kraków, Poland
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15
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Khanal D, Chang RYK, Morales S, Chan HK, Chrzanowski W. High Resolution Nanoscale Probing of Bacteriophages in an Inhalable Dry Powder Formulation for Pulmonary Infections. Anal Chem 2019; 91:12760-12767. [DOI: 10.1021/acs.analchem.9b02282] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Dipesh Khanal
- Advanced Drug Delivery Group, School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW 2006, Australia
- Sydney Nano Institute, Faculty of Medicine and Health, Sydney Pharmacy School, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Rachel Yoon Kyung Chang
- Advanced Drug Delivery Group, School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW 2006, Australia
- Sydney Pharmacy School, The University of Sydney, Sydney, NSW 2006, Australia
| | - Sandra Morales
- AmpliPhi Biosciences AU, Brookvale, Sydney, NSW 2001, Australia
| | - Hak-Kim Chan
- Advanced Drug Delivery Group, School of Pharmacy, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW 2006, Australia
- Sydney Pharmacy School, The University of Sydney, Sydney, NSW 2006, Australia
| | - Wojciech Chrzanowski
- Sydney Pharmacy School, The University of Sydney, Sydney, NSW 2006, Australia
- Sydney Nano Institute, Faculty of Medicine and Health, Sydney Pharmacy School, The University of Sydney, Sydney, New South Wales 2006, Australia
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16
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High-fidelity probing of the structure and heterogeneity of extracellular vesicles by resonance-enhanced atomic force microscopy infrared spectroscopy. Nat Protoc 2019; 14:576-593. [PMID: 30651586 DOI: 10.1038/s41596-018-0109-3] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Extracellular vesicles (EVs) are highly specialized nanoscale assemblies that deliver complex biological cargos to mediate intercellular communication. EVs are heterogeneous, and characterization of this heterogeneity is paramount to understanding EV biogenesis and activity, as well as to associating them with biological responses and pathologies. Traditional approaches to studying EV composition generally lack the resolution and/or sensitivity to characterize individual EVs, and therefore the assessment of EV heterogeneity has remained challenging. We have recently developed an atomic force microscope IR spectroscopy (AFM-IR) approach to probe the structural composition of single EVs with nanoscale resolution. Here, we provide a step-by-step procedure for our approach and show its power to reveal heterogeneity across individual EVs, within the same population of EVs and between different EV populations. Our approach is label free and able to detect lipids, proteins and nucleic acids within individual EVs. After isolation of EVs from cell culture medium, the protocol involves incubation of the EV sample on a suitable substrate, setup of the AFM-IR instrument and collection of nano-IR spectra and nano-IR images. Data acquisition and analyses can be completed within 24 h, and require only a basic knowledge of spectroscopy and chemistry. We anticipate that new understanding of EV composition and structure through AFM-IR will contribute to our biological understanding of EV biology and could find application in disease diagnosis and the development of EV therapies.
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Wang Y, Heinemann F, Top S, Dazzi A, Policar C, Henry L, Lambert F, Jaouen G, Salmain M, Vessieres A. Ferrocifens labelled with an infrared rhenium tricarbonyl tag: synthesis, antiproliferative activity, quantification and nano IR mapping in cancer cells. Dalton Trans 2018; 47:9824-9833. [PMID: 29993046 DOI: 10.1039/c8dt01582a] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Antiproliferative activities of several members of the ferrocifen family, both in vitro and in vivo, are well documented although their precise location in cancer cells has not yet been elucidated. However, two different infrared imaging techniques have been used to map the non-cytotoxic cyrhetrenyl analogue of ferrociphenol in a single cell. This observation prompted us to tag two ferrocifens with a cyrhetrenyl unit [CpRe(CO)3; Cp = η5-cyclopentadienyl] by grafting it, via an ester bond, either to one of the phenols (4, 5) or to the hydroxypropyl chain (6). Complexes 4-6 retained a high cytotoxicity on breast cancer cells (MDA-MB-231) with IC50 values in the range 0.32-2.5 μM. Transmission IR spectroscopy was used to quantify the amount of cyrhetrenyl tag present in cells incubated with 5 or 6. The results show that after a 1-hour incubation of cells at 37 °C, complexes 5 and 6 are mainly present within cells while only a limited percentage, quantified by ICP-OES, remained in the incubation medium. AFM-IR spectroscopy, a technique coupling infrared irradiation with near-field AFM detection, was used to map the cyrhetrenyl unit in a single MDA-MB-231 cell, incubated at 37 °C for 1 hour with 10 μM of 6. The results show that signal distribution of the characteristic band of the Re(CO)3 entity at 1950 cm-1 matched those of amide and phosphate, thus indicating a location of the complex mainly in the cell nucleus.
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Affiliation(s)
- Yong Wang
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire (IPCM), F-75005 Paris, France.
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