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López-Corbalán V, Fuertes A, Llamas-Saiz AL, Amorín M, Granja JR. Recognition of anion-water clusters by peptide-based supramolecular capsules. Nat Commun 2024; 15:6055. [PMID: 39025854 PMCID: PMC11258365 DOI: 10.1038/s41467-024-50193-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 06/26/2024] [Indexed: 07/20/2024] Open
Abstract
The biological and technological importance of anion-mediated processes has made the development of improved methods for the selective recognition of anions one of the most relevant research topics today. The hydration sphere of anions plays an important role in the functions performed by anions by forming a variety of cluster complexes. Here we describe a supramolecular capsule that recognizes hydrated anion clusters. These clusters are most likely composed of three ions that form hydrated C3 symmetry complexes that are entrapped within the supramolecular capsule of the same symmetry. The capsule is made of self-assembled α,γ-cyclic peptide containing amino acid with by five-membered rings and equipped with a tris(triazolylethyl)amine cap. To recognise the hydrated anion clusters, the hexapeptide capsule must disassemble to entrap them between its two subunits.
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Affiliation(s)
- Victoria López-Corbalán
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Organic Chemistry Department, Universidade de Santiago de Compostela, Santiago de Compostela, Spain
| | - Alberto Fuertes
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Organic Chemistry Department, Universidade de Santiago de Compostela, Santiago de Compostela, Spain
| | - Antonio L Llamas-Saiz
- Unidad de Rayos X; Área de infraestructuras de Investigación, RIAIDT Edificio CACTUS, Universidade de Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - Manuel Amorín
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Organic Chemistry Department, Universidade de Santiago de Compostela, Santiago de Compostela, Spain
| | - Juan R Granja
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Organic Chemistry Department, Universidade de Santiago de Compostela, Santiago de Compostela, Spain.
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Pramanik S, Islam ASM, Ghosh I, Ghosh P. Supramolecular chemistry of liquid-liquid extraction. Chem Sci 2024; 15:7824-7847. [PMID: 38817569 PMCID: PMC11134359 DOI: 10.1039/d4sc00933a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Accepted: 04/27/2024] [Indexed: 06/01/2024] Open
Abstract
Liquid-Liquid Extraction (LLE) is a venerable and widely used method for the separation of a targeted solute between two immiscible liquids. In recent years, this method has gained popularity in the supramolecular chemistry community due to the development of various types of synthetic receptors that effectively and selectively bind specific guests in an aqueous medium through different supramolecular interactions. This has eventually led to the development of state-of-the-art extraction technologies for the removal and purification of anions, cations, ion pairs, and small molecules from one liquid phase to another liquid phase, which is an industrially viable method. The focus of this perspective is to furnish a vivid picture of the current understanding of supramolecular interaction-based LLE chemistry. This will not only help to improve separation technology in the chemical, mining, nuclear waste treatment, and medicinal chemistry sectors but is also useful to address the purity issue of the extractable species, which is otherwise difficult. Thus, up-to-date knowledge on this subject will eventually provide opportunities to develop large-scale waste remediation processes and metallurgy applications that can address important real-life problems.
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Affiliation(s)
- Sourav Pramanik
- School of Chemical Sciences, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Abu S M Islam
- School of Chemical Sciences, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Iti Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science Kolkata 700032 India
| | - Pradyut Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science Kolkata 700032 India
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Pamuła M, Bulatov E, Martínez-Crespo L, Kiesilä A, Naulapää J, Kalenius E, Helttunen K. Anion binding and transport with meso-alkyl substituted two-armed calix[4]pyrroles bearing urea and hydroxyl groups. Org Biomol Chem 2023; 21:6595-6603. [PMID: 37530577 DOI: 10.1039/d3ob00919j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
Calix[4]pyrroles bearing hydroxyl (1) or urea (3) groups attached to the meso-positions with propyl linkers were synthesized as cis- and trans-isomers. The anion binding properties of cis-1 and cis-3 were screened with ion-mobility mass spectrometry, where cis-1 formed complexes with Cl-, Br- and H2PO4-, whereas cis-3 formed complexes with most of the investigated anions, including Cl-, Br-, I-, NO3-, ClO4-, OTf-, SCN- and PF6-. The structures of the chloride complexes were further elucidated with density functional theory calculations and a crystal structure obtained for cis-1. In solution, chloride and dihydrogenphosphate anion binding with cis-1 and cis-3 were compared using 1H NMR titrations. To assess the suitability of two-armed calix[4]pyrroles as anion transporters, chloride transport studies of cis-1, cis-3 and trans-3 were performed using large unilamellar vesicles. The results revealed that cis-3 had the highest activity among the investigated calix[4]pyrroles, which was related to the improved affinity and isolation of chloride inside the binding cavity of cis-3 in comparison to cis-1. The results indicate that appending calix[4]pyrroles with two hydrogen bonding arms is a feasible strategy to obtain anion transporters and receptors with high anion affinity.
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Affiliation(s)
- Małgorzata Pamuła
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box 35, FI-40014 University of Jyvaskyla, Finland.
| | - Evgeny Bulatov
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box 35, FI-40014 University of Jyvaskyla, Finland.
| | - Luis Martínez-Crespo
- Department of Chemistry, Universitat de les Illes Balears, Cra. Valldemossa Km. 7.5, 07122 Palma de Mallorca, Spain
| | - Anniina Kiesilä
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box 35, FI-40014 University of Jyvaskyla, Finland.
| | - Julia Naulapää
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box 35, FI-40014 University of Jyvaskyla, Finland.
| | - Elina Kalenius
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box 35, FI-40014 University of Jyvaskyla, Finland.
| | - Kaisa Helttunen
- University of Jyvaskyla, Department of Chemistry, Nanoscience Center, P.O. Box 35, FI-40014 University of Jyvaskyla, Finland.
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Rather IA, Riaz U, Ali R. Experimental and Computational Anion Binding Studies of meso-Substituted One-Walled Phthalimide-based Calix[4]pyrrole. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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A theoretical study on structures of an epigallocatechin-3-O-gallate/caffeine complex in aqueous solution. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Hong KI, Kim H, Kim Y, Choi MG, Jang WD. Strapped calix[4]pyrrole as a lithium salts selective receptor through separated ion-pair binding. Chem Commun (Camb) 2020; 56:10541-10544. [DOI: 10.1039/d0cc04809g] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A triazole-bearing strapped calix[4]pyrrole (1) was synthesized as a lithium salt selective ion pair receptor.
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Affiliation(s)
- Kyeong-Im Hong
- Department of Chemistry
- Yonsei University
- Seoul 03722
- Korea
| | | | - Younghun Kim
- Department of Chemistry
- Yonsei University
- Seoul 03722
- Korea
| | - Moon-Gun Choi
- Department of Chemistry
- Yonsei University
- Seoul 03722
- Korea
| | - Woo-Dong Jang
- Department of Chemistry
- Yonsei University
- Seoul 03722
- Korea
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Dutta R, Samala S, Jo H, Ok KM, Lee CH. meso-Bis(ethynyl) Versus meso-Bis(aryl) Calix[4]pyrroles: Dimensionally Well-Modulated Receptors That Can Regulate the Anion Binding Domains. J Org Chem 2019; 84:6851-6857. [PMID: 31081615 DOI: 10.1021/acs.joc.9b00639] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
meso-Substituted calix[4]pyrroles 2-6 containing a direct meso-ethynyl linker displayed high binding affinities and unique conformational features on halide anion binding. A general conformational bias for the equatorial alignments of the meso-(aryl)ethynyl groups was observed in the host-halide complexes which was attributed to the repulsive anion-alkyne interactions and released steric strain. Such conformational features of host-halide complexes persisted even in the case of calix[4]pyrrole 6 bearing cationic meso components, which displayed the highest binding affinity for chloride anions among known meso-aryl calix[4]pyrroles. Synthetic details, conformational features, and comparative halide anion binding properties of this series of calix[4]pyrroles are described.
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Affiliation(s)
- Ranjan Dutta
- Department of Chemistry , Kangwon National University , Chun Cheon 24341 , Korea
| | - Srinivas Samala
- Department of Chemistry , Kangwon National University , Chun Cheon 24341 , Korea
| | - Hongil Jo
- Department of Chemistry , Sogang University , Seoul 121-742 , Korea
| | - Kang Min Ok
- Department of Chemistry , Sogang University , Seoul 121-742 , Korea
| | - Chang-Hee Lee
- Department of Chemistry , Kangwon National University , Chun Cheon 24341 , Korea
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