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Nakamura T, Yano S, Liu YF, Nabeshima T. Formation of a Metallomacrocycle Possessing Nitrogen Donors Assembled in the Cavity and Unique Water Clusters. Inorg Chem 2024; 63:12697-12702. [PMID: 38950409 DOI: 10.1021/acs.inorgchem.4c01542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/03/2024]
Abstract
2,2'-Bipyridyl (bpy) is widely used as a chelating unit for metal complexation but is not usually considered as a hydrogen-bonding unit. This is because the metal-free bpy units are usually in a transoid conformation, and the two nitrogen lone pairs are pointed to the opposite sides. We now report a metallomacrocycle whose three metal-free bpy units are in a cisoid conformation and are fixed in the cavity. The complexation of nickel(II) only at the salen units of the triangular bpytrisalen ligand produced this rigid and planar macrocycle. Its cavity is surrounded by hydrogen-bond acceptors (N of bpy and O of salen), and it was found that unique pentagonal prism clusters of water molecules templated by the cavity were formed in the crystal. This study has not only increased the variation of the synthetic methodologies of multinuclear complexes but has also provided the structural platform on which multiple bpy units exert hydrogen-bonding functions.
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Affiliation(s)
- Takashi Nakamura
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Syuhei Yano
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Yi-Fu Liu
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Tatsuya Nabeshima
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
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2
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Hokimoto Y, Nakamura T. Synthesis of a macrocyclic oligomer of pyridylbenzoxazole utilizing dynamic covalent bonds and its unsymmetric conversion. Chem Commun (Camb) 2024; 60:1281-1284. [PMID: 38196391 DOI: 10.1039/d3cc06216c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2024]
Abstract
A new unsymmetric macrocycle was synthesized by an effective and high yield 3-step synthesis, which was composed of macrocyclization, irreversible conversion, and desymmetrization. The dynamic nature of imine bonds as well as selective conversion based on strain release were utilized. Moreover, the unsymmetric macrocycle formed an interesting bivalve-like 2 : 1 complex with zinc.
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Affiliation(s)
- Yuya Hokimoto
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
| | - Takashi Nakamura
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan.
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3
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Nakamura T, Watanabe S. Site-Selective Ligand Bridging among Multiple Internal Coordination Sites of a Metallomacrocycle and Its Conformational Regulation. Inorg Chem 2023; 62:12886-12894. [PMID: 37530452 DOI: 10.1021/acs.inorgchem.3c01571] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
Metallomacrocycles with internal coordination sites have a high potential to precisely control the positions of the guest ligands and the overall shape of the assemblies by utilizing the directionality and reversibility of the coordination bonds. However, when such coordinative hosts possess multiple coordination sites, it was difficult to control to which coordination sites the incoming guest ligands bind, because such systems often result in a random, uncontrolled mixture. The metallomacrocycle that we now report, a hexanuclear palladium complex of hexapap possessing six internal coordination sites, can take two different conformations depending on the guests. One is an Alternate conformation, in which six coordination sites of pap alternatively point to Up-Down-Up-Down-Up-Down. The other is a Twisted conformation, in which the coordination sites direct Up-Middle-Down-Up-Middle-Down. Interestingly, linear ditopic α,ω-diamines are captured in three distinct cross-linking modes, and regulations between the two macrocyclic conformations have been realized by the lengths of the diamines. Furthermore, the heteroleptic site-selective bridging of two kinds of diamines has been achieved. It has been demonstrated that a slight difference in the diamine lengths leads to a significant change in the structure and selection of the produced host-guest macrocyclic complexes.
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Affiliation(s)
- Takashi Nakamura
- Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8571, Ibaraki, Japan
| | - Satoru Watanabe
- Degree Programs in Pure and Applied Sciences, Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8571, Ibaraki, Japan
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4
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Gregoliński J, Ślepokura K, Kłak J, Witwicki M. Multinuclear Ni(II) and Cu(II) complexes of a meso 6 + 6 macrocyclic amine derived from trans-1,2-diaminocyclopentane and 2,6-diformylpyridine. Dalton Trans 2022; 51:9735-9747. [PMID: 35703400 DOI: 10.1039/d2dt01329k] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Four hexanuclear chloride and sulphate Ni(II) and Cu(II) complexes 1, 2, 4 and 5 and one tetranuclear nitrate Cu(II) complex 3 have been synthesised from appropriate metal salts and 6 + 6 octadecaaza macrocyclic ligands. All obtained coordination compounds have been characterised by elemental analysis, spectroscopic methods (ESI MS, NMR and EPR), magnetic susceptibility measurements and X-ray crystallography. Their X-ray crystal structures reveal different coordination modes of metal cations involved in the obtained centro-symmetrical coordination compounds. The conformational folding of the macrocyclic ligand adopted in the respective complexes depends on the number of metal cations bound within the macrocycle but not on their type. The cavities of these multinuclear complexes might be occupied by solvent molecules and counter anions bound by hydrogen bonds or might be empty in the case where the macrocyclic ring of the ligand is squeezed in the middle. All obtained Ni(II) and Cu(II) coordination compounds are paramagnetic. This has been proved by their 1H NMR and EPR spectra and magnetic measurements. Direct current (DC) variable-temperature magnetic susceptibility measurements on the polycrystalline samples of 1-5 were carried out in the temperature range of 1.8-300 K. The magnetic behaviour of 1 and 2 is dominated by the magnetic anisotropy of the nickel(II) ion masking the magnetic interactions between magnetic centres. The magnetic data of 3-5 reveal small antiferromagnetic interactions within the Cu4 and Cu6 units. EPR experiments for 3-5 show, at 9.6 and 34 GHz frequencies, that the predominant contribution to the orbitals occupied by the unpaired electrons in the ground state originates from dx2-y2.
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Affiliation(s)
- Janusz Gregoliński
- Faculty of Chemistry University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.
| | - Katarzyna Ślepokura
- Faculty of Chemistry University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.
| | - Julia Kłak
- Faculty of Chemistry University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.
| | - Maciej Witwicki
- Faculty of Chemistry University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland.
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5
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Moriya Y, Yamanaka M, Mori K. Synthesis of C3-Symmetric Macrocyclic Triimines from Monomers having Boc-Protected Amine and Formyl Group. CHEM LETT 2022. [DOI: 10.1246/cl.210736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yu Moriya
- Department of Applied Chemistry, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Nakacho, Koganei, Tokyo 184-8588
| | - Masahiro Yamanaka
- Department of Chemistry, Faculty of Science, Rikkyo University, 3-34-1 Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Keiji Mori
- Department of Applied Chemistry, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Nakacho, Koganei, Tokyo 184-8588
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6
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Nakamura T. Development of Artificial Receptors Based on Assembly of Metal Complex Units and Desymmetrization of Molecular Components. CHEM LETT 2021. [DOI: 10.1246/cl.210418] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Takashi Nakamura
- Faculty of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
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7
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Nakamura T, Feng RY, Nabeshima T. A Sandwich‐Shaped Hexanuclear Silver Complex with a Giant Cavity Constructed from a Macrocycle with Inward Chelating Units. Eur J Inorg Chem 2020. [DOI: 10.1002/ejic.202000882] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Takashi Nakamura
- Faculty of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS) University of Tsukuba 1-1-1 Tennodai Tsukuba Ibaraki 305–8571 Japan
| | - Rui Yun Feng
- Faculty of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS) University of Tsukuba 1-1-1 Tennodai Tsukuba Ibaraki 305–8571 Japan
| | - Tatsuya Nabeshima
- Faculty of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS) University of Tsukuba 1-1-1 Tennodai Tsukuba Ibaraki 305–8571 Japan
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8
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Wang JF, Li YJ, Guo SZ, Zhao L. A new symmetrical nickel(II) complex with isothiocyanate coordination: synthesis, crystal structure, Hirshfeld surface analysis, DFT calculation and antibacterial activities. INORG NANO-MET CHEM 2020. [DOI: 10.1080/24701556.2020.1852428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Ji-Fa Wang
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, China
| | - Ya-Juan Li
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, China
| | - Shuang-Zhu Guo
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, China
| | - Li Zhao
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, China
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9
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Fluorescent chemical sensor based on double N2O2 cavities for continuous recognition of Cu2+ and Al3+. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2020.112829] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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10
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Li YJ, Bian RN, Li P, Xie KF, Dong WK. Investigation of supramolecular assemblies, Hirshfeld surfaces and DFT analyses, and fluorescence properties of three newly synthesized multinuclear Co(II), Ni(II) and Zn(II) complexes. Polyhedron 2020. [DOI: 10.1016/j.poly.2020.114867] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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11
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Li YJ, Xu X, Bian RN, Xie KF, Zhang Y. Synthesis, structural characterization, fluorescence properties, and DFT calculations of a novel hetero-hexanuclear [CuII4GdIII2] bis(salamo)-like complex involving bidentate chelating and bridging nitrate groups. INORG NANO-MET CHEM 2020. [DOI: 10.1080/24701556.2020.1842450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Ya-Juan Li
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, People’s Republic of China
| | - Xin Xu
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, People’s Republic of China
| | - Ruo-Nan Bian
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, People’s Republic of China
| | - Ke-Feng Xie
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, People’s Republic of China
| | - Yang Zhang
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, People’s Republic of China
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12
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Kim S, Ryu H, Clegg JK, Lindoy LF, Lee SS. Exocyclic Coordination of Thiamacrocycles Leading to cis- and trans-Palladium(II) Complexes and a Tripalladium(II) Complex Incorporating Acetimidic Anhydride. Inorg Chem 2020; 59:15807-15812. [DOI: 10.1021/acs.inorgchem.0c02258] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Seulgi Kim
- Department of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, South Korea
| | - Hyunsoo Ryu
- Department of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, South Korea
| | - Jack K. Clegg
- School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Queensland 4072, Australia
| | - Leonard F. Lindoy
- Department of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, South Korea
- School of Chemistry, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Shim Sung Lee
- Department of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju 52828, South Korea
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13
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Preston D, Kruger PE. Using Complementary Ligand Denticity to Direct Metallosupramolecular Structure about Metal Ions with Square‐Planar Geometry. Chempluschem 2020; 85:454-465. [DOI: 10.1002/cplu.202000019] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 02/05/2020] [Indexed: 01/30/2023]
Affiliation(s)
- Dan Preston
- MacDiarmid Institute for Advanced Materials and Nanotechnology School of Physical and Chemical SciencesUniversity of Canterbury Christchurch 8041 New Zealand
| | - Paul E. Kruger
- MacDiarmid Institute for Advanced Materials and Nanotechnology School of Physical and Chemical SciencesUniversity of Canterbury Christchurch 8041 New Zealand
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14
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Lavendomme R, Ronson TK, Nitschke JR. Metal and Organic Templates Together Control the Size of Covalent Macrocycles and Cages. J Am Chem Soc 2019; 141:12147-12158. [PMID: 31287669 PMCID: PMC6756589 DOI: 10.1021/jacs.9b06182] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
![]()
Covalent
macrocycles and three-dimensional cages were prepared by the self-assembly
of di- or tritopic anilines and 2,6-diformylpyridine subcomponents
around palladium(II) templates. The resulting 2,6-bis(imino)pyridyl-PdII motif contains a tridentate ligand, leaving a free coordination
site on the PdII centers, which points inward. The binding
of ligands to the free coordination sites in these assemblies was
found to alter the product stability, and multitopic ligands could
be used to control product size. Multitopic ligands also bridged metallomacrocycles
to form higher-order supramolecular assemblies, which were characterized
via NMR spectroscopy, mass spectrometry, and X-ray crystallography.
An efficient method was developed to reduce the imine bonds to secondary
amines, leading to fully organic covalent macrocycles and cages that
were inaccessible through other means.
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Affiliation(s)
- Roy Lavendomme
- Department of Chemistry , University of Cambridge , Lensfield Road , Cambridge CB2 1EW , United Kingdom
| | - Tanya K Ronson
- Department of Chemistry , University of Cambridge , Lensfield Road , Cambridge CB2 1EW , United Kingdom
| | - Jonathan R Nitschke
- Department of Chemistry , University of Cambridge , Lensfield Road , Cambridge CB2 1EW , United Kingdom
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