1
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Baykov SV, Katlenok EA, Baykova SO, Semenov AV, Bokach NA, Boyarskiy VP. Conformation-Associated C··· dz2-Pt II Tetrel Bonding: The Case of Cyclometallated Platinum(II) Complex with 4-Cyanopyridyl Urea Ligand. Int J Mol Sci 2024; 25:4052. [PMID: 38612862 PMCID: PMC11012616 DOI: 10.3390/ijms25074052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Revised: 03/30/2024] [Accepted: 04/03/2024] [Indexed: 04/14/2024] Open
Abstract
The nucleophilic addition of 3-(4-cyanopyridin-2-yl)-1,1-dimethylurea (1) to cis-[Pt(CNXyl)2Cl2] (2) gave a new cyclometallated compound 3. It was characterized by NMR spectroscopy (1H, 13C, 195Pt) and high-resolution mass spectrometry, as well as crystallized to obtain two crystalline forms (3 and 3·2MeCN), whose structures were determined by X-ray diffraction. In the crystalline structure of 3, two conformers (3A and 3B) were identified, while the structure 3·2MeCN had only one conformer 3A. The conformers differed by orientation of the N,N-dimethylcarbamoyl moiety relative to the metallacycle plane. In both crystals 3 and 3·2MeCN, the molecules of the Pt(II) complex are associated into supramolecular dimers, either {3A}2 or {3B}2, via stacking interactions between the planes of two metal centers, which are additionally supported by hydrogen bonding. The theoretical consideration, utilizing a number of computational approaches, demonstrates that the C···dz2(Pt) interaction makes a significant contribution in the total stacking forces in the geometrically optimized dimer [3A]2 and reveals the dz2(Pt)→π*(PyCN) charge transfer (CT). The presence of such CT process allowed for marking the C···Pt contact as a new example of a rare studied phenomenon, namely, tetrel bonding, in which the metal site acts as a Lewis base (an acceptor of noncovalent interaction).
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Affiliation(s)
- Sergey V. Baykov
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russia; (E.A.K.); (A.V.S.); (V.P.B.)
| | | | | | | | - Nadezhda A. Bokach
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russia; (E.A.K.); (A.V.S.); (V.P.B.)
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2
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Topić NB, Bedeković N, Poljanić L, Stilinović V, Cinčić D. Evaluation of Concomitant Halogen and Pnictogen Bonds in Cocrystals of Imines Derived from 2-Nitrobenzaldehyde and 4-Haloaniline. CRYSTAL GROWTH & DESIGN 2024; 24:3010-3020. [PMID: 38585379 PMCID: PMC10996288 DOI: 10.1021/acs.cgd.4c00102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 03/05/2024] [Accepted: 03/07/2024] [Indexed: 04/09/2024]
Abstract
Three imines have been prepared by condensation of 2-nitrobenzaldehyde and 4-haloanilines (halo = Cl, Br, and I) with functionalities that enabled them to act as both halogen and pnictogen bond donors; however, both interactions were found to be absent in the solid state. The prepared imines were further cocrystallized with 1,3-diiodotetrafluorobenzene and 1,3,5-triiodotetrafluorobenzene as halogen bond donors. Six novel cocrystals were prepared by means of liquid-assisted mechanochemical synthesis and by crystallization from solution. All six cocrystals were of 1:1 stoichiometry and comprised a N···I halogen bond between an iodine atom of the perhalogenated halogen bond donor and the imino nitrogen atom of the imine acting as an acceptor. Additionally, in all six cocrystals, the imine molecules were interconnected by NO2···NO2 pnictogen bonding interactions. Computational analysis has shown that the NO2···NO2 exhibits bond critical point electron densities in the region (4.897-8.306) × 10-3 e Å-3 and interaction energies of 23.6-27.7 kJ mol-1, whereas the N···I halogen bonds generally have higher critical point electron densities ((1.795-1.937) × 10-2 e Å-3), but the corresponding total interaction energies are lower (19.4-20.4 kJ mol-1). Statistical analysis of the appearance of NO2···NO2 contacts concomitantly with halogen or hydrogen bonds seems to indicate that there is a positive correlation between the presence of NO2···NO2 pnictogen bonding interactions and other directional interactions in crystal structures.
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Affiliation(s)
- Nea Baus Topić
- Department of Chemistry,
Faculty of Science, University of Zagreb, Horvatovac 102a, Zagreb 10000, Croatia
| | - Nikola Bedeković
- Department of Chemistry,
Faculty of Science, University of Zagreb, Horvatovac 102a, Zagreb 10000, Croatia
| | | | - Vladimir Stilinović
- Department of Chemistry,
Faculty of Science, University of Zagreb, Horvatovac 102a, Zagreb 10000, Croatia
| | - Dominik Cinčić
- Department of Chemistry,
Faculty of Science, University of Zagreb, Horvatovac 102a, Zagreb 10000, Croatia
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3
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Azougagh O, Jilal I, Jabir L, El-Hammi H, Essayeh S, Mohammed N, Achalhi N, El Yousfi R, El Idrissi A, El Ouardi Y, Laatikainen K, Abou-Salama M, El Barkany S. Dissolution mechanism of cellulose in a benzyltriethylammonium/urea deep eutectic solvent (DES): DFT-quantum modeling, molecular dynamics and experimental investigation. Phys Chem Chem Phys 2023; 25:22870-22888. [PMID: 37587837 DOI: 10.1039/d3cp02335d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/18/2023]
Abstract
In this paper, a benzyltriethylammonium/urea DES was investigated as a new green and eco-friendly medium for the progress of organic chemical reactions, particularly the dissolution and the functionalization of cellulose. In this regard, the viscosity-average molecular weight of cellulose (M̄w) during the dissolution/regeneration process was investigated, showing no significant degradation of the polymer chains. Moreover, X-ray diffraction patterns indicated that the cellulose dissolution process in the BTEAB/urea DES decreased the crystallinity index from 87% to 75%, and there was no effect on type I cellulose polymorphism. However, a drastic impact of the cosolvents (water and DMSO) on the melting point of the DES was observed. Besides, to understand the evolution of cellulose-DES interactions, the formation mechanism of the system was studied in terms of H-bond density and radial distribution function (RDF) using molecular dynamics modeling. Furthermore, density functional theory (DFT) was used to evaluate the topological characteristics of the polymeric system such as potential energy density (PED), laplacian electron density (LED), energy density, and kinetic energy density (KED) at bond critical points (BCPs) between the cellulose and the DES. The quantum theory of atoms in molecules (AIM), Bader's quantum theory (BQT), and reduced density gradient (RDG) scatter plots have been exploited to estimate and locate non-covalent interactions (NCIs). The results revealed that the dissolution process is attributed to the physical interactions, mainly the strong H-bond interactions.
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Affiliation(s)
- Omar Azougagh
- Laboratory of Molecular Chemistry, Materials and Environment (LMCME), Department of Chemistry, Faculty Multidisciplinary Nador, Mohammed 1st University, P. B. 300, Nador 62700, Morocco.
| | - Issam Jilal
- LIMOME Laboratory, Dhar El Mehraz Faculty of Sciences, Sidi Mohamed Ben Abdellah University, B.P. 1796 Atlas, Fes 30000, Morocco
| | - Loubna Jabir
- Laboratory of Molecular Chemistry, Materials and Environment (LMCME), Department of Chemistry, Faculty Multidisciplinary Nador, Mohammed 1st University, P. B. 300, Nador 62700, Morocco.
| | - Hayat El-Hammi
- Laboratory of Molecular Chemistry, Materials and Environment (LMCME), Department of Chemistry, Faculty Multidisciplinary Nador, Mohammed 1st University, P. B. 300, Nador 62700, Morocco.
| | - Soumya Essayeh
- Laboratory of Molecular Chemistry, Materials and Environment (LMCME), Department of Chemistry, Faculty Multidisciplinary Nador, Mohammed 1st University, P. B. 300, Nador 62700, Morocco.
| | - Nor Mohammed
- Applied Chemistry Unit, Sciences and Technologies Faculty, Abdelmalek Essaadi University, 32 003 Al Hoceima, Morocco
| | - Nafea Achalhi
- Laboratory Applied Chemistry and Environmental (LCAE-URAC18), Faculty of Sciences of Oujda, Mohammed 1st University, 60000 Oujda, Morocco
| | - Ridouan El Yousfi
- Laboratory Applied Chemistry and Environmental (LCAE-URAC18), Faculty of Sciences of Oujda, Mohammed 1st University, 60000 Oujda, Morocco
| | - Abderrahmane El Idrissi
- Laboratory Applied Chemistry and Environmental (LCAE-URAC18), Faculty of Sciences of Oujda, Mohammed 1st University, 60000 Oujda, Morocco
| | - Youssef El Ouardi
- LIMOME Laboratory, Dhar El Mehraz Faculty of Sciences, Sidi Mohamed Ben Abdellah University, B.P. 1796 Atlas, Fes 30000, Morocco
- Laboratory of Separation Technology, Lappeenranta University of Technology, P.O. Box 20, FI-53851 Lappeenranta, Finland
| | - Katri Laatikainen
- Laboratory of Separation Technology, Lappeenranta University of Technology, P.O. Box 20, FI-53851 Lappeenranta, Finland
| | - Mohamed Abou-Salama
- Laboratory of Molecular Chemistry, Materials and Environment (LMCME), Department of Chemistry, Faculty Multidisciplinary Nador, Mohammed 1st University, P. B. 300, Nador 62700, Morocco.
| | - Soufian El Barkany
- Laboratory of Molecular Chemistry, Materials and Environment (LMCME), Department of Chemistry, Faculty Multidisciplinary Nador, Mohammed 1st University, P. B. 300, Nador 62700, Morocco.
- Applied Chemistry Unit, Sciences and Technologies Faculty, Abdelmalek Essaadi University, 32 003 Al Hoceima, Morocco
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4
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Tunsrichon S, Chainok K, Promarak V, Arunlimsawat S, Youngme S, Boonmak J. Dual stimuli-responsive phosphorescence of a Pb(II) coordination polymer to acidic vapors and thermal treatment. Dalton Trans 2023; 52:2209-2213. [PMID: 36762541 DOI: 10.1039/d2dt04087e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
We present a new intensely phosphorescent Pb(II) coordination polymer (1) containing a heteroatomic ligand. It has a quantum yield of 21.62% and a lifetime of 25.46 μs. The naked-eye solid-state photoluminescence of 1 significantly changes in response to acidic vapors and thermal treatment, indicating the coexistence of acidochromic and thermochromic luminescence.
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Affiliation(s)
- Sujitra Tunsrichon
- Materials Chemistry Research Center, Department of Chemistry, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand.
| | - Kittipong Chainok
- Thammasat University Research Unit in Multifunctional Crystalline Materials and Applications (TU-MCMA), Faculty of Science and Technology, Thammasat University, Pathum Thani 12121, Thailand
| | - Vinich Promarak
- School of Molecular Science & Engineering, Vidyasirimedhi Institute of Science and Technology (VISTEC), Wangchan, Rayong 21210, Thailand
| | - Suangsiri Arunlimsawat
- School of Molecular Science & Engineering, Vidyasirimedhi Institute of Science and Technology (VISTEC), Wangchan, Rayong 21210, Thailand
| | - Sujittra Youngme
- Materials Chemistry Research Center, Department of Chemistry, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand.
| | - Jaursup Boonmak
- Materials Chemistry Research Center, Department of Chemistry, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand.
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5
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Sk W, Chattopadhyay S. An overview of the synthesis and structures lead(II) and mercury(II) complexes with diamine-based bis-pyridine Schiff base ligands. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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6
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García-Santos I, Castiñeiras A, Mahmoudi G, Babashkina MG, Zangrando E, Gomila RM, Frontera A, Safin DA. Supramolecular aggregation of lead(II) perchlorate and a thiosemicarbazide derivative linked by a myriad of non-covalent interactions. Inorganica Chim Acta 2022. [DOI: 10.1016/j.ica.2022.120974] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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7
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Effect of a lone electron pair and tetrel interactions on the structure of Pb(II) CPs constructed from pyrimidine carboxylates and auxiliary inorganic ions. Polyhedron 2022. [DOI: 10.1016/j.poly.2022.115818] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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8
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Lead(II) complexes with Kemp’s tricarboxylate: Can lone pair activity be discerned? Polyhedron 2022. [DOI: 10.1016/j.poly.2022.115760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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9
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Wang JJ, Chen X, Zhang BS, Dun LN, Xu MY, Wang H, Li CB. Crystal structure, IR, TG, and magnetic properties of a thiabendazole aqua-cobalt(II) 4,4'-stilbenedicarboxylate. INORG NANO-MET CHEM 2022. [DOI: 10.1080/24701556.2022.2033999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Jia-Jun Wang
- Key Laboratory of Preparation and Application of Environmental Friendly Materials, Ministry of Education, Jilin Normal University, Changchun, People’s Republic of China
| | - Xue Chen
- Key Laboratory of Preparation and Application of Environmental Friendly Materials, Ministry of Education, Jilin Normal University, Changchun, People’s Republic of China
| | - Bao-Sheng Zhang
- Key Laboratory of Preparation and Application of Environmental Friendly Materials, Ministry of Education, Jilin Normal University, Changchun, People’s Republic of China
| | - Li-Nan Dun
- Key Laboratory of Preparation and Application of Environmental Friendly Materials, Ministry of Education, Jilin Normal University, Changchun, People’s Republic of China
| | - Meng-Yue Xu
- Key Laboratory of Preparation and Application of Environmental Friendly Materials, Ministry of Education, Jilin Normal University, Changchun, People’s Republic of China
| | - He Wang
- Key Laboratory of Preparation and Application of Environmental Friendly Materials, Ministry of Education, Jilin Normal University, Changchun, People’s Republic of China
| | - Chuan-Bi Li
- Key Laboratory of Preparation and Application of Environmental Friendly Materials, Ministry of Education, Jilin Normal University, Changchun, People’s Republic of China
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10
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Banerjee A, Chowdhury D, Gomila RM, Chattopadhyay S. Recent advances on the tetrel bonding interaction in the solid state structure of lead complexes with hydrazine based bis-pyridine Schiff base ligands. Polyhedron 2022. [DOI: 10.1016/j.poly.2022.115670] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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11
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Saghatforoush L, Hakimi M, Gholipour A, Bakhtiari A, Moeini K, Eigner V, Dušek M. Formation of 1D coordination polymers by reaction of a tetrazine ligand and PbX2 (X: Br, I) salts: Spectral, structural and theoretical studies. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115440] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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12
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Structural insights into coordination polymers based on 6s2 Pb(II) and Bi(III) centres connected via heteroaromatic carboxylate linkers and their potential applications. Coord Chem Rev 2021. [DOI: 10.1016/j.ccr.2021.213935] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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13
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Alikhanova AI, Atioğlu Z, Akkurt M, Mlowe S. Crystal structure and Hirshfeld surface analysis of (3a R,4 S,7 S,7a S)-4,5,6,7,8,8-hexa-chloro-2-{6-[(3a R,4 R,7 R,7a S)-4,5,6,7,8,8-hexa-chloro-1,3-dioxo-1,3,3a,4,7,7a-hexa-hydro-2 H-4,7-methano-isoindol-2-yl]hex-yl}-3a,4,7,7a-tetra-hydro-1 H-4,7-methano-iso-indole-1,3(2 H)-dione. Acta Crystallogr E Crystallogr Commun 2021; 77:775-779. [PMID: 34422299 PMCID: PMC8340976 DOI: 10.1107/s2056989021006952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Accepted: 07/06/2021] [Indexed: 11/16/2022]
Abstract
The mol-ecule of the title compound, C24H16Cl12N2O4, is generated by a crystallographic inversion centre at the midpoint of the central C-C bond. A kink in the mol-ecule is defined by a torsion angle of -169.86 (15)° about this central bond of the alkyl bridge. The pyrrolidine ring is essentially planar [max. deviation = 0.014 (1) Å]. The cyclo-hexane ring has a boat conformation, while both cyclo-pentane rings adopt an envelope conformation. In the crystal structure, mol-ecules are linked by inter-molecular C-H⋯O, C-H⋯Cl and C-Cl⋯π inter-actions, and short inter-molecular Cl⋯O and Cl⋯Cl contacts, forming a three-dimensional network.
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Affiliation(s)
- Aygun I. Alikhanova
- Institute of Polymer Materials, National Academy of Sciences of Azerbaijan, Sumgayit, 5004, Azerbaijan
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Sixberth Mlowe
- University of Dar es Salaam, Dar es Salaam University College of Education, Department of Chemistry, PO Box 2329, Dar es Salaam, Tanzania
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14
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Shikhaliyev NQ, Atioğlu Z, Akkurt M, Ahmadova NE, Askerov RK, Bhattarai A. Crystal structure and Hirshfeld surface analysis of 1,3-bis-{2,2-di-chloro-1-[( E)-phenyl-diazen-yl]ethen-yl}benzene. Acta Crystallogr E Crystallogr Commun 2021; 77:814-818. [PMID: 34422307 PMCID: PMC8340979 DOI: 10.1107/s2056989021007192] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Accepted: 07/12/2021] [Indexed: 11/13/2022]
Abstract
In the mol-ecule of the title compound, C22H14Cl4N4, the central benzene ring makes dihedral angles of 77.03 (9) and 81.42 (9)° with the two approximately planar 2,2-di-chloro-1-[(E)-phenyl-diazen-yl]vinyl groups. In the crystal, mol-ecules are linked by C-H⋯π, C-Cl⋯π, Cl⋯Cl and Cl⋯H inter-actions, forming a three-dimensional network. The Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯H (30.4%), C⋯H/H⋯C (20.4%), Cl⋯H/H⋯Cl (19.4%), Cl⋯Cl (7.8%) and Cl⋯C/C⋯Cl (7.3%) inter-actions.
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Affiliation(s)
- Namiq Q. Shikhaliyev
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Nigar E. Ahmadova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Rizvan K. Askerov
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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15
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Andleeb H, Danish L, Munawar S, Ahmed MN, Khan I, Ali HS, Tahir MN, Simpson J, Hameed S. Theoretical and computational insight into the supramolecular assemblies of Schiff bases involving hydrogen bonding and C H…π interactions: Synthesis, X-ray characterization, Hirshfeld surface analysis, anticancer activity and molecular docking analysis. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130223] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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16
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Atioğlu Z, Akkurt M, Mammadova GZ, Huseynov FE, Hajiyeva SR, Shamilov NT, Bhattarai A. Crystal structure and Hirshfeld surface analysis of dimethyl 5-[2-(2,4,6-trioxo-1,3-diazinan-5-yl-idene)hydrazin-1-yl]benzene-1,3-di-carboxyl-ate 0.224-hydrate. Acta Crystallogr E Crystallogr Commun 2021; 77:759-764. [PMID: 34513026 PMCID: PMC8382054 DOI: 10.1107/s2056989021006563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Accepted: 06/22/2021] [Indexed: 12/03/2022]
Abstract
In the crystal, the whole mol-ecule of the title compound, C14H12N4O7·0.224H2O, is nearly planar with a maximum deviation from the least-squares plane of 0.352 (1) Å. The mol-ecular conformation is stabilized by an intra-molecular N-H⋯O hydrogen bond, generating an S(6) ring motif. In the crystal, mol-ecules are linked by centrosymmetric pairs of N-H⋯O hydrogen bonds, forming ribbons along the c-axis direction. These ribbons connected by van der Waals contacts, forming sheets parallel to the ac plane. There are also inter-molecular van der Waals contacts and and C-H⋯π inter-actions between the sheets. A Hirshfeld surface analysis indicates that the most prevalent inter-actions are O⋯H/H⋯O (41.2%), H⋯H (19.2%), C⋯H/H⋯C (12.2%) and C⋯O/ O⋯C (8.4%).
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Affiliation(s)
- Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gunay Z. Mammadova
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Fatali E. Huseynov
- Department of Ecology and Soil Sciences, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Sevinj R. Hajiyeva
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Nazim T. Shamilov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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17
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Zhang Y, Li P, Li YJ, Dong WK. Exploring a more flexible N 2O 2-donor ligand and its octahedral tri-nuclear Co(II) and Ni(II) complexes. J COORD CHEM 2021. [DOI: 10.1080/00958972.2021.1940981] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Yang Zhang
- School of Chemistry and Chemical Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, People’s Republic of China
| | - Peng Li
- School of Chemistry and Chemical Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, People’s Republic of China
| | - Ya-Juan Li
- School of Chemistry and Chemical Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, People’s Republic of China
| | - Wen-Kui Dong
- School of Chemistry and Chemical Engineering, Lanzhou Jiaotong University, Lanzhou, Gansu, People’s Republic of China
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18
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An investigation into three-dimensional octahedral multi-nuclear Ni(II)-based complexes supported by a more flexible salamo-type ligand. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129796] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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19
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Ding YJ, Li YJ, Li P, Xie KF, Dong WK. Insight into new mono- and tri-nuclear nickel(II)-based complexes supported by structural variation of salamo-like ligands. TRANSIT METAL CHEM 2021. [DOI: 10.1007/s11243-021-00449-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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20
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García-Raso A, Terrón A, Fiol JJ, López-Zafra A, Massanet B, Frontera A, Barceló-Oliver M. Modified-amino acid/peptide pyrimidine analogs: synthesis, structural characterization and DFT studies of N-(pyrimidyl)gabapentine and N-(pyrimidyl)baclofen. NEW J CHEM 2021. [DOI: 10.1039/d1nj04639j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
H-Bonding networks and π–π and halogen bonding interactions in the crystal structures of N-modified amino acid pyrimidine analogs are investigated using DFT calculations and X-ray crystallography analysis.
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Affiliation(s)
- Angel García-Raso
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Angel Terrón
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Juan J. Fiol
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Adela López-Zafra
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Bárbara Massanet
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Miquel Barceló-Oliver
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
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21
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New lead(II) coordination polymer derived from second generation O-methylpyridylxanthate: Crystallographic and computational studies. Inorganica Chim Acta 2021. [DOI: 10.1016/j.ica.2020.120032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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22
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Venter C, Akerman MP. Pre-organisation of ligand donor sets modulates the supramolecular structure of bis(pyridyl–imine) silver( i) chelates. CrystEngComm 2021. [DOI: 10.1039/d0ce01610a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Ligands comprising o-, m- or p-phenylenediamine coupled to pyridine-2-carbaldehyde were coordinated to silver(i). By controlling the positions of the ligand donor sets, the supramolecular structure of the coordination compounds was manipulated.
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Affiliation(s)
- Chané Venter
- School of Chemistry and Physics
- University of KwaZulu-Natal
- Pietermaritzburg
- South Africa
| | - Matthew P. Akerman
- School of Chemistry and Physics
- University of KwaZulu-Natal
- Pietermaritzburg
- South Africa
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23
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Nemec V, Lisac K, Bedeković N, Fotović L, Stilinović V, Cinčić D. Crystal engineering strategies towards halogen-bonded metal–organic multi-component solids: salts, cocrystals and salt cocrystals. CrystEngComm 2021. [DOI: 10.1039/d1ce00158b] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
This highlight presents an overview of the current advances in the preparation of halogen bonded metal–organic multi-component solids, including salts and cocrystals comprising neutral and ionic constituents.
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Affiliation(s)
- Vinko Nemec
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Katarina Lisac
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Nikola Bedeković
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Luka Fotović
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Vladimir Stilinović
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
| | - Dominik Cinčić
- Department of Chemistry
- Faculty of Science
- University of Zagreb
- HR-10000 Zagreb
- Croatia
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24
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Li YJ, Bian RN, Li P, Xie KF, Dong WK. Investigation of supramolecular assemblies, Hirshfeld surfaces and DFT analyses, and fluorescence properties of three newly synthesized multinuclear Co(II), Ni(II) and Zn(II) complexes. Polyhedron 2020. [DOI: 10.1016/j.poly.2020.114867] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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25
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Schwade VD, Tirloni B, Burrow RA, Lang ES. Lead(II) thiocyanate reaction behaviour with hydrazones. Polyhedron 2020. [DOI: 10.1016/j.poly.2020.114707] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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26
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Atioğlu Z, Akkurt M, Shikhaliyev NQ, Suleymanova GT, Babayeva GV, Gurbanova NV, Mammadova GZ, Mlowe S. ( E)-1-(2,6-Di-chloro-phen-yl)-2-(3-nitro-benzyl-idene)hydrazine: crystal structure and Hirshfeld surface analysis. Acta Crystallogr E Crystallogr Commun 2020; 76:1291-1295. [PMID: 32844016 PMCID: PMC7405561 DOI: 10.1107/s2056989020009433] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Accepted: 07/10/2020] [Indexed: 11/10/2022]
Abstract
The stabilized conformation of the title compound, C13H9Cl2N3O2, is similar to that of the isomeric compound (E)-1-(2,6-di-chloro-phen-yl)-2-(2-nitro-benzyl-idene)hydrazine. The 2,6-di-chloro-phenyl ring and the nitro-substituted benzene ring form a dihedral angle of 26.25 (16)°. In the crystal, face-to-face π-π stacking inter-actions along the a-axis direction occur between the centroids of the 2,6-di-chloro-phenyl ring and the nitro-substituted benzene ring. The mol-ecules are further linked by C-H⋯O contacts and N-H⋯O and C-H⋯Cl hydrogen bonds, forming pairs of hydrogen-bonded mol-ecular layers parallel to (100). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (22.1%), Cl⋯H/H⋯Cl (20.5%), O⋯H/H⋯O (19.7%), C⋯C (11.1%) and C⋯H/H⋯C (8.3%) inter-actions.
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Affiliation(s)
- Zeliha Atioğlu
- İlke Education and Health Foundation, Cappadocia University, Cappadocia Vocational College, The Medical Imaging Techniques Program, 50420 Mustafapaşa, Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Namiq Q Shikhaliyev
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Gulnar T Suleymanova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Gulnare V Babayeva
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Nurana V Gurbanova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Gunay Z Mammadova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Sixberth Mlowe
- University of Dar es Salaam, Dar es Salaam University College of Education, Department of Chemistry, PO Box 2329, Dar es Salaam, Tanzania
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27
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Çelikesir ST, Akkurt M, Shikhaliyev NQ, Suleymanova GT, Babayeva GV, Gurbanova NV, Mammadova GZ, Bhattarai A. Crystal structure and Hirshfeld surface analysis of ( E)-1-(2,6-di-chloro-phen-yl)-2-(2-nitro-benzyl-idene)hydrazine. Acta Crystallogr E Crystallogr Commun 2020; 76:1173-1178. [PMID: 32843995 PMCID: PMC7405556 DOI: 10.1107/s2056989020008567] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Accepted: 06/25/2020] [Indexed: 11/15/2022]
Abstract
In the title compound, C13H9Cl2N3O2, the 2,6-di-chloro-phenyl ring and the nitro-substituted benzene ring form a dihedral angle of 21.16 (14)°. In the crystal, face-to-face π-π stacking inter-actions occur along the a-axis direction between the centroids of the 2,6-di-chloro-phenyl ring and the nitro-substituted benzene ring. Furthermore, these mol-ecules show intra-molecular N-H⋯Cl and C-H⋯O contacts and are linked by inter-molecular N-H⋯O and C-H⋯Cl hydrogen bonds, forming pairs of hydrogen-bonded mol-ecular layers parallel to (20). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (23.0%), O⋯H/H⋯O (20.1%), Cl⋯H/H⋯Cl (19.0%), C⋯C (11.2%) and H⋯C/C⋯H (8.0%) inter-actions.
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Affiliation(s)
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Namiq Q Shikhaliyev
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Gulnar T Suleymanova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Gulnare V Babayeva
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Nurana V Gurbanova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Gunay Z Mammadova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University), Biratnagar, Nepal
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28
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Özkaraca K, Akkurt M, Shikhaliyev NQ, Askerova UF, Suleymanova GT, Mammadova GZ, Shadrack DM. Crystal structure and Hirshfeld surface analysis of ( E)-4-{2,2-di-chloro-1-[(3,5-di-methyl-phen-yl)diazen-yl]ethen-yl}- N, N-di-methyl-aniline. Acta Crystallogr E Crystallogr Commun 2020; 76:1251-1254. [PMID: 32844008 PMCID: PMC7405560 DOI: 10.1107/s2056989020009202] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 07/06/2020] [Indexed: 11/10/2022]
Abstract
In the title compound, C18H19Cl2N3, the planes of the benzene rings subtend a dihedral angle of 77.07 (10)°. In the crystal, mol-ecules are associated into inversion dimers via short Cl⋯Cl contacts [3.3763 (9) Å]. A Hirshfeld surface analysis indicates that the most important contact percentages for the different types of inter-actions are H⋯H (43.9%), Cl⋯H/H⋯Cl (22.9%), C⋯H/H⋯C (20.8%) and N⋯H/H⋯N (8.0%).
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Affiliation(s)
- Kadriye Özkaraca
- Institute of Natural and Applied Science, Erciyes University, 38039 Kayseri, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Namiq Q. Shikhaliyev
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Ulviyya F. Askerova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Gulnar T. Suleymanova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Daniel M. Shadrack
- Department of Health & Biomedical Sciences, School of Life Science and Bioengineering, The Nelson Mandela Africa Institute of Science and Technology, PO Box 447, Arusha, Tanzania
- Department of Chemistry, St. John’s University of Tanzania, PO Box 47, Dodoma, Tanzania
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29
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Özkaraca K, Akkurt M, Shikhaliyev NQ, Askerova UF, Suleymanova GT, Shikhaliyeva IM, Bhattarai A. Crystal structure and Hirshfeld surface analysis of 4-{2,2-di-chloro-1-[( E)-(4-fluoro-phen-yl)diazen-yl]ethen-yl}- N, N-di-methyl-aniline. Acta Crystallogr E Crystallogr Commun 2020; 76:811-815. [PMID: 32523745 PMCID: PMC7274008 DOI: 10.1107/s2056989020006106] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 05/05/2020] [Indexed: 11/25/2022]
Abstract
In the title compound, C16H14Cl2FN3, the dihedral angle between the two aromatic rings is 64.12 (14)°. The crystal structure is stabilized by a short Cl⋯H contact, C-Cl⋯π and van der Waals inter-actions. The Hirshfeld surface analysis and two-dimensional fingerprint plots show that H⋯H (33.3%), Cl⋯H/H⋯Cl (22.9%) and C⋯H/H⋯C (15.5%) inter-actions are the most important contributors towards the crystal packing.
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Affiliation(s)
- Kadriye Özkaraca
- Institute of Natural and Applied Science, Erciyes University, 38039 Kayseri, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Namiq Q. Shikhaliyev
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Ulviyya F. Askerova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Gulnar T. Suleymanova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Irada M. Shikhaliyeva
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University), Biratnagar, Nepal
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30
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Đaković M. Predictive association of metal–organic systems in the solid-state: the molecular electrostatic potential based approach. CRYSTALLOGR REV 2020. [DOI: 10.1080/0889311x.2020.1731803] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Marijana Đaković
- Faculty of Science, Department of Chemistry, University of Zagreb, Zagreb, Croatia
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31
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Duruskari GS, Akkurt M, Mammadova GZ, Chyrka T, Maharramov AM. Crystal structure and Hirshfeld surface analysis of ( E)-3-(benzyl-idene-amino)-5-phenyl-thia-zolidin-2-iminium bromide. Acta Crystallogr E Crystallogr Commun 2020; 76:427-431. [PMID: 32148888 PMCID: PMC7057372 DOI: 10.1107/s2056989020001899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Accepted: 02/10/2020] [Indexed: 11/14/2023]
Abstract
The central thia-zolidine ring of the title salt, C16H16N3S+·Br-, adopts an envelope conformation, with the C atom bearing the phenyl ring as the flap atom. In the crystal, the cations and anions are linked by N-H⋯Br hydrogen bonds, forming chains parallel to the b-axis direction. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions to the crystal packing are from H⋯H (46.4%), C⋯H/H⋯C (18.6%) and H⋯Br/Br⋯H (17.5%) inter-actions.
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Affiliation(s)
- Gulnara Sh. Duruskari
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Taras Chyrka
- Department of Theoretical and Industrial Heat Engineering (TPT), National Technical University of Ukraine "Igor Sikorsky Kyiv Polytechnic Institute", 03056, Kyiv, Ukraine
| | - Abel M. Maharramov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
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32
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Sarto LE, Badaró WPD, de Gois EP, Barbosa MIF, Torres C, Viana RB, Honorato J, Castellano EE, de Almeida ET. Crystal structures and DFT analysis of Palladium(II) complexes with Schiff bases derived from N,N-dialkyl-p-phenylenediamines. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127549] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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33
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Efimenko ZM, Novikov AS, Ivanov DM, Piskunov AV, Vereshchagin AA, Levin OV, Bokach NA, Kukushkin VY. The (Dioximate)Ni II/I 2 System: Ligand Oxidation and Binding Modes of Triiodide Species. Inorg Chem 2020; 59:2316-2327. [PMID: 32027131 DOI: 10.1021/acs.inorgchem.9b03132] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Reinvestigation of (o-benzoquinonedioximate)2Ni/I2 systems demonstrated that the reaction itself and also the crystallization conditions dramatically affect the identity of generated species. Crystallization (CHCl3, 20-25 °C) of the nickel(II) dioximate complex [Ni(bqoxH)2] (bqoxH2 = o-benzoquinonedioxime) with I2 in the 1:(1-10) molar ratios of the reactants led to several (o-benzoquinonedioximate)2Ni derivatives and/or iodine adducts [Ni(I)(bqoxH)(bqoxH2)]·3/2I2, [Ni(I3)(bqoxH)(bqoxH2)]·[Ni(bqoxH)2], and [Ni(I3)(bqox•-)(bqoxH2)]·I2; the latter one, featuring the anion-radical bqox•- ligand, is derived from the formal (-2H+/1e-)-oxidation of bqoxH2. In these three adducts, various types of noncovalent interactions were identified experimentally and their existence was supported theoretically. The [Ni(I3)(bqox•-)(bqoxH2)]·I2 adduct exhibits simultaneous semicoordination and coordination patterns of the triiodide ligand; this is the first recognition of the semicoordination of any polyiodide ligand to a metal center. The semicoordination noncovalent contact Ni···I3 (3.7011(10) Å) is substantially longer that the Ni-I3 coordination bond (2.8476(9) Å), and the difference in energies between these two types of linkages is 8-12 kcal/mol.
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Affiliation(s)
- Zarina M Efimenko
- Institute of Chemistry , Saint Petersburg State University , Universitetskaya Nab. 7/9 , 199034 Saint Petersburg , Russian Federation
| | - Alexander S Novikov
- Institute of Chemistry , Saint Petersburg State University , Universitetskaya Nab. 7/9 , 199034 Saint Petersburg , Russian Federation
| | - Daniil M Ivanov
- Institute of Chemistry , Saint Petersburg State University , Universitetskaya Nab. 7/9 , 199034 Saint Petersburg , Russian Federation
| | - Alexandr V Piskunov
- G.A. Razuvaev Institute of Organometallic Chemistry , Russian Academy of Sciences , Tropinina Str. 49 , 603950 Nizhny Novgorod , Russian Federation
| | - Anatoly A Vereshchagin
- Institute of Chemistry , Saint Petersburg State University , Universitetskaya Nab. 7/9 , 199034 Saint Petersburg , Russian Federation
| | - Oleg V Levin
- Institute of Chemistry , Saint Petersburg State University , Universitetskaya Nab. 7/9 , 199034 Saint Petersburg , Russian Federation
| | - Nadezhda A Bokach
- Institute of Chemistry , Saint Petersburg State University , Universitetskaya Nab. 7/9 , 199034 Saint Petersburg , Russian Federation
| | - Vadim Yu Kukushkin
- Institute of Chemistry , Saint Petersburg State University , Universitetskaya Nab. 7/9 , 199034 Saint Petersburg , Russian Federation
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34
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García-Raso A, Terrón A, Balle B, López-Zafra A, Frontera A, Barceló-Oliver M, Fiol JJ. Crystal structures of N6-modified-amino acid nucleobase analogs( iii): adenine–valeric acid, adenine–hexanoic acid and adenine–gabapentine. NEW J CHEM 2020. [DOI: 10.1039/d0nj02538k] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
H-bonding networks, anion–π and π–π interactions in the crystal structures of N6-modified-amino acid adenine analogs are investigated by means of DFT calculations and X-ray crystallography analysis.
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Affiliation(s)
- Angel García-Raso
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma
- Spain
| | - Angel Terrón
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma
- Spain
| | - Bartomeu Balle
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma
- Spain
| | - Adela López-Zafra
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma
- Spain
| | - Antonio Frontera
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma
- Spain
| | | | - Juan J. Fiol
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma
- Spain
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35
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Tripathi S, Islam S, Seth SK, Bauzá A, Frontera A, Mukhopadhyay S. Supramolecular assemblies involving salt bridges: DFT and X-ray evidence of bipolarity. CrystEngComm 2020. [DOI: 10.1039/d0ce01356k] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Three new aminopyridinium/4,4′-oxydibenzoate salts have been synthesized and structurally characterized. A common feature of these compounds is the formation of antiparallel π-stacked salt bridges.
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Affiliation(s)
- Suparna Tripathi
- Department of Physics
- Jadavpur University
- Kolkata-700032
- India
- Department of Chemistry
| | - Samiul Islam
- Department of Physics
- Jadavpur University
- Kolkata-700032
- India
| | | | - Antonio Bauzá
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma de Mallorca
- Spain
| | - Antonio Frontera
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma de Mallorca
- Spain
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36
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Asgarova AR. Crystal structure and Hirshfeld surface analysis of 5-(3,5-di- tert-butyl-4-hy-droxy-phen-yl)-3-phenyl-4,5-di-hydro-1 H-pyrazole-1-carboxamide. Acta Crystallogr E Crystallogr Commun 2019; 75:1467-1471. [PMID: 31636977 PMCID: PMC6775746 DOI: 10.1107/s205698901901243x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 09/06/2019] [Indexed: 11/16/2022]
Abstract
In the title compound, C24H31N3O2, the mean plane of the central pyrazole ring [r.m.s. deviation = 0.095 Å] makes dihedral angles of 11.93 (9) and 84.53 (8)°, respectively, with the phenyl and benzene rings. There is a short intra-molecular N-H⋯N contact, which generates an S(5) ring motif. In the crystal, pairs of N-H⋯O hydrogen bonds link inversion-related mol-ecules into dimers, generating an R 2 2(8) ring motif. The Hirshfeld surface analysis indicates that the most significant contribution involves H⋯H contacts of 68.6.
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Affiliation(s)
- Ayten R. Asgarova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
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37
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Akkurt M, Shikhaliyev NQ, Askerova UF, Mukhtarova SH, Mammadova GZ, Toze FAA. Crystal structure and Hirshfeld surface analysis of ( E)-4-{[2,2-di-chloro-1-(4-meth-oxy-phen-yl)ethen-yl]diazen-yl}benzo-nitrile. Acta Crystallogr E Crystallogr Commun 2019; 75:1190-1194. [PMID: 31417790 PMCID: PMC6690439 DOI: 10.1107/s2056989019009642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Accepted: 07/05/2019] [Indexed: 11/11/2022]
Abstract
In the title compound, C16H11Cl2N3O, the 4-meth-oxy-substituted benzene ring makes a dihedral angle of 41.86 (9)° with the benzene ring of the benzo-nitrile group. In the crystal, mol-ecules are linked into layers parallel to (020) by C-H⋯O contacts and face-to-face π-π stacking inter-actions [centroid-centroid distances = 3.9116 (14) and 3.9118 (14) Å] between symmetry-related aromatic rings along the a-axis direction. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from Cl⋯H/H⋯Cl (22.8%), H⋯H (21.4%), N⋯H/H⋯N (16.1%), C⋯H/H⋯C (14.7%) and C⋯C (9.1%) inter-actions.
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Affiliation(s)
- Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Namiq Q. Shikhaliyev
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Ulviyya F. Askerova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Sevinc H. Mukhtarova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Flavien A. A. Toze
- Department of Chemistry, Faculty of Sciences, University of Douala, PO Box 24157, Douala, Republic of Cameroon
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38
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Duruskari GS, Khalilov AN, Akkurt M, Mammadova GZ, Chyrka T, Maharramov AM. Crystal structure and Hirshfeld surface analysis of ( E)-3-[(4-chloro-benzyl-idene)amino]-5-phenyl-thia-zolidin-2-iminium bromide. Acta Crystallogr E Crystallogr Commun 2019; 75:1175-1179. [PMID: 31417787 PMCID: PMC6690452 DOI: 10.1107/s2056989019009885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 07/10/2019] [Indexed: 11/13/2022]
Abstract
The title salt, C16H15ClN3S+·Br-, is isotypic with (E)-3-[(4-fluoro-benzyl-idene)amino]-5-phenyl-thia-zolidin-2-iminium bromide [Khalilov et al. (2019 ▸). Acta Cryst. E75, 662-666]. In the cation of the title salt, the atoms of the phenyl ring attached to the central thia-zolidine ring and the atom joining the thia-zolidine ring to the benzene ring are disordered over two sets of sites with occupancies of 0.570 (3) and 0.430 (3). The major and minor components of the disordered thia-zolidine ring adopt slightly distorted envelope conformations, with the C atom bearing the phenyl ring as the flap atom. In the crystal, centrosymmetrically related cations and anions are linked into dimeric units via N-H⋯Br hydrogen bonds, which are further connected by weak C-H⋯Br contacts into chains parallel to the a axis. Furthermore, not existing in the earlier report of (E)-3-[(4-fluoro-benzyl-idene)amino]-5-phenyl-thia-zolidin-2-iminium bromide, C-H⋯π inter-actions and π-π stacking inter-actions [centroid-to-centroid distance = 3.897 (2) Å] between the major components of the disordered phenyl ring contribute to the stabilization of the mol-ecular packing. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions for the crystal packing are from H⋯H (30.5%), Br⋯H/H⋯Br (21.2%), C⋯H/H⋯C (19.2%), Cl⋯H/H⋯Cl (13.0%) and S⋯H/H⋯S (5.0%) inter-actions.
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Affiliation(s)
- Gulnara Sh. Duruskari
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Ali N. Khalilov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
- Department of Physics and Chemistry, "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Taras Chyrka
- Department of Theoretical and Industrial Heat Engineering (TPT), National Technical University of Ukraine "Igor Sikorsky Kyiv Polytechnic Institute", 03056, Kyiv, Ukraine
| | - Abel M. Maharramov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
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39
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Nitropyridine-1-Oxides as Excellent π-Hole Donors: Interplay between σ-Hole (Halogen, Hydrogen, Triel, and Coordination Bonds) and π-Hole Interactions. Int J Mol Sci 2019; 20:ijms20143440. [PMID: 31336936 PMCID: PMC6678756 DOI: 10.3390/ijms20143440] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2019] [Revised: 07/09/2019] [Accepted: 07/11/2019] [Indexed: 01/17/2023] Open
Abstract
In this manuscript, we use the primary source of geometrical information, i.e., Cambridge Structural Database (CSD), combined with density functional theory (DFT) calculations (PBE0-D3/def2-TZVP level of theory) to demonstrate the relevance of π-hole interactions in para-nitro substituted pyridine-1-oxides. More importantly, we show that the molecular electrostatic potential (MEP) value above and below the π–hole of the nitro group is largely influenced by the participation of the N-oxide group in several interactions like hydrogen-bonding (HB) halogen-bonding (XB), triel bonding (TrB), and finally, coordination-bonding (CB) (N+–O− coordinated to a transition metal). The CSD search discloses that p-nitro-pyridine-1-oxide derivatives have a strong propensity to participate in π-hole interactions via the nitro group and, concurrently, N-oxide group participates in a series of interactions as electron donor. Remarkably, the DFT calculations show from strong to moderate cooperativity effects between π–hole and HB/XB/TrB/CB interactions (σ-bonding). The synergistic effects between π-hole and σ-hole bonding interactions are studied in terms of cooperativity energies, using MEP surface analysis and the Bader’s quantum theory of atoms in molecules (QTAIM).
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40
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Khalilov AN, Atioğlu Z, Akkurt M, Duruskari GS, Toze FAA, Huseynova AT. Crystal structure and Hirshfeld surface analysis of ( E)-3-[(4-fluoro-benzyl-idene)amino]-5-phenyl-thia-zolidin-2-iminium bromide. Acta Crystallogr E Crystallogr Commun 2019; 75:662-666. [PMID: 31110807 PMCID: PMC6505598 DOI: 10.1107/s2056989019004973] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Accepted: 04/11/2019] [Indexed: 11/13/2022]
Abstract
In the cation of the title salt, C16H15FN3S+·Br-, the phenyl ring is disordered over two sets of sites with a refined occupancy ratio of 0.503 (4):0.497 (4). The mean plane of the thia-zolidine ring makes dihedral angles of 13.51 (14), 48.6 (3) and 76.5 (3)° with the fluoro-phenyl ring and the major- and minor-disorder components of the phenyl ring, respectively. The central thia-zolidine ring adopts an envelope conformation. In the crystal, centrosymmetrically related cations and anions are linked into dimeric units via N-H⋯Br hydrogen bonds, which are further connected by weak C-H⋯Br hydrogen bonds into chains parallel to [110]. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions to the crystal packing are from H⋯H (44.3%), Br⋯H/H⋯Br (16.8%), C⋯H/H⋯C (13.9%), F⋯H/H⋯F (10.3%) and S⋯H/H⋯S (3.8%) inter-actions.
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Affiliation(s)
- Ali N. Khalilov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az 1148, Baku, Azerbaijan
- Department of Physics and Chemistry, "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Zeliha Atioğlu
- İlke Education and Health Foundation, Cappadocia University, Cappadocia Vocational College, The Medical Imaging Techniques Program, 50420 Mustafapaşa, Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gulnara Sh. Duruskari
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az 1148, Baku, Azerbaijan
| | - Flavien A. A. Toze
- Department of Chemistry, Faculty of Sciences, University of Douala, PO Box 24157, Douala, Republic of Cameroon
| | - Afet T. Huseynova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az 1148, Baku, Azerbaijan
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41
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An unusual four-nuclear Pb(II)-pyrrole-2-carboxylato polymer: The effect of the lone pair and non-covalent interactions on the supramolecular assembly and fluorescence properties. J SOLID STATE CHEM 2019. [DOI: 10.1016/j.jssc.2019.03.007] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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42
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Matczak P. N → Sn coordination in the complexes of tin halides with pyridine: A comparison between Sn(II) and Sn(IV). Appl Organomet Chem 2019. [DOI: 10.1002/aoc.4811] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Piotr Matczak
- Department of Physical Chemistry, Faculty of Chemistry; University of Łódź; Pomorska 163/165 90-236 Lodz Poland
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43
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Atioğlu Z, Akkurt M, Shikhaliyev NQ, Suleymanova GT, Bagirova KN, Toze FAA. Crystal structure and Hirshfeld surface analysis of ( E)-1-[2,2-di-chloro-1-(4-nitro-phen-yl)ethen-yl]-2-(4-fluoro-phen-yl)diazene. Acta Crystallogr E Crystallogr Commun 2019; 75:237-241. [PMID: 30800458 PMCID: PMC6362658 DOI: 10.1107/s2056989019000707] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 01/15/2019] [Indexed: 11/10/2022]
Abstract
In the title compound, C14H8Cl2FN3O2, the 4-fluoro-phenyl ring and the nitro-substituted benzene ring form a dihedral angle of 63.29 (8)°. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds into chains running parallel to the c axis. The crystal packing is further stabilized by C-Cl⋯π, C-F⋯π and N-O⋯π inter-actions. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯O/O⋯H (15.5%), H⋯H (15.3%), Cl⋯H/H⋯Cl (13.8%), C⋯H/H⋯C (9.5%) and F⋯H/H⋯F (8.2%) inter-actions.
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Affiliation(s)
- Zeliha Atioğlu
- İlke Education and Health Foundation, Cappadocia University, Cappadocia Vocational College, The Medical Imaging Techniques Program, 50420 Mustafapaşa, Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Namiq Q. Shikhaliyev
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Gulnar T. Suleymanova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Khanim N. Bagirova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Flavien A. A. Toze
- Department of Chemistry, Faculty of Sciences, University of Douala, PO Box 24157, Douala, Republic of Cameroon
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44
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Andleeb H, Khan I, Franconetti A, Tahir MN, Simpson J, Hameed S, Frontera A. Diverse structural assemblies of U-shaped hydrazinyl-sulfonamides: experimental and theoretical analysis of non-covalent interactions stabilizing solid state conformations. CrystEngComm 2019. [DOI: 10.1039/c8ce01917g] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The preparation and structures of five new U-shaped hydrazinyl-sulfonamides are reported.
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Affiliation(s)
- Hina Andleeb
- Department of Chemistry
- Quaid-i-Azam University
- Islamabad-45320
- Pakistan
| | - Imtiaz Khan
- Department of Chemistry
- Quaid-i-Azam University
- Islamabad-45320
- Pakistan
- School of Chemistry & Manchester Institute of Biotechnology
| | - Antonio Franconetti
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma de Mallorca (Baleares)
- Spain
| | | | - Jim Simpson
- Department of Chemistry
- University of Otago
- Dunedin
- New Zealand
| | - Shahid Hameed
- Department of Chemistry
- Quaid-i-Azam University
- Islamabad-45320
- Pakistan
| | - Antonio Frontera
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma de Mallorca (Baleares)
- Spain
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45
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Velásquez JD, Mahmoudi G, Zangrando E, Gurbanov AV, Zubkov FI, Zorlu Y, Masoudiasl A, Echeverría J. Experimental and theoretical study of Pb⋯S and Pb⋯O σ-hole interactions in the crystal structures of Pb(ii) complexes. CrystEngComm 2019. [DOI: 10.1039/c9ce00959k] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The crystal structures of two novel Pb(ii) hemidirected compounds present considerably strong Pb⋯S σ-hole bonding as the main intermolecular interactions.
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Affiliation(s)
- Juan D. Velásquez
- Departament de Química Inorgànica i Orgànica and Institut de Química Teòrica i Computacional (IQTC-UB)
- Universitat de Barcelona
- 08028 Barcelona
- Spain
| | - Ghodrat Mahmoudi
- Department of Chemistry
- Faculty of Science
- University of Maragheh
- Maragheh
- Iran
| | - Ennio Zangrando
- Department of Chemical and Pharmaceutical Sciences
- University of Trieste
- 34127 Trieste
- Italy
| | - Atash V. Gurbanov
- Centro de Química Estrutural
- Complexo I
- Instituto Superior Técnico
- Universidade de Lisboa
- Lisbon
| | - Fedor I. Zubkov
- Organic Chemistry Department
- RUDN University
- 117198 Moscow
- Russian Federation
| | - Yunus Zorlu
- Department of Chemistry
- Gebze Technical University
- Gebze
- Turkey
| | - Ardavan Masoudiasl
- Department of Chemistry
- Faculty of Science
- University of Maragheh
- Maragheh
- Iran
| | - Jorge Echeverría
- Departament de Química Inorgànica i Orgànica and Institut de Química Teòrica i Computacional (IQTC-UB)
- Universitat de Barcelona
- 08028 Barcelona
- Spain
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46
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García-Raso A, Terrón A, López-Zafra A, García-Viada A, Barta A, Frontera A, Lorenzo J, Rodríguez-Calado S, Vázquez-López EM, Fiol JJ. Crystal structures of N6-modified-amino acid related nucleobase analogs (II): hybrid adenine-β-alanine and adenine-GABA molecules. NEW J CHEM 2019. [DOI: 10.1039/c9nj02279a] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
H-Bonding networks and anion–π interactions in the crystal structures of N6-modified-amino acid adenine analogs are investigated using X-ray crystallography and DFT calculations.
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Affiliation(s)
- Angel García-Raso
- Departament de Química
- Universitat de les Illes Balears
- Crta. de Valldemossa km 7.5
- 07122 Palma (Baleares)
- Spain
| | - Angel Terrón
- Departament de Química
- Universitat de les Illes Balears
- Crta. de Valldemossa km 7.5
- 07122 Palma (Baleares)
- Spain
| | - Adela López-Zafra
- Departament de Química
- Universitat de les Illes Balears
- Crta. de Valldemossa km 7.5
- 07122 Palma (Baleares)
- Spain
| | | | - Agostina Barta
- Departament de Química
- Universitat de les Illes Balears
- Crta. de Valldemossa km 7.5
- 07122 Palma (Baleares)
- Spain
| | - Antonio Frontera
- Departament de Química
- Universitat de les Illes Balears
- Crta. de Valldemossa km 7.5
- 07122 Palma (Baleares)
- Spain
| | - Julia Lorenzo
- Instituto de Biotecnología y Biomedicina
- Departamento de Bioquímica y Biologia Molecular
- Universidad Autónoma de Barcelona
- Barcelona
- Spain
| | - Sergi Rodríguez-Calado
- Instituto de Biotecnología y Biomedicina
- Departamento de Bioquímica y Biologia Molecular
- Universidad Autónoma de Barcelona
- Barcelona
- Spain
| | - Ezequiel M. Vázquez-López
- Instituto de Investigación Sanitaria Galicia Sur/Universidade de Vigo
- Departamento de Química Inorgánica
- Facultade de Química
- Edificio Ciencias Experimentais
- E-36310 Vigo
| | - Juan J. Fiol
- Departament de Química
- Universitat de les Illes Balears
- Crta. de Valldemossa km 7.5
- 07122 Palma (Baleares)
- Spain
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47
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Franconetti A, Quiñonero D, Frontera A, Resnati G. Unexpected chalcogen bonds in tetravalent sulfur compounds. Phys Chem Chem Phys 2019; 21:11313-11319. [DOI: 10.1039/c9cp01033e] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Combined CSD analysis and theoretical calculations show the importance of the polarizability in chalcogen bonding interactions. We provide evidence that the Lewis base has a preference in some cases for the σ-hole that is opposite to the more polarizable group instead of the more electron withdrawing one.
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Affiliation(s)
- Antonio Franconetti
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma (Baleares)
- Spain
| | - David Quiñonero
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma (Baleares)
- Spain
| | - Antonio Frontera
- Department of Chemistry
- Universitat de les Illes Balears
- 07122 Palma (Baleares)
- Spain
| | - Giuseppe Resnati
- Laboratory of Nanostructured Fluorinated Materials (NFMLab)
- Department of Chemistry
- Materials and Chemical Engineering “Giulio Natta”
- Politecnico di Milano
- 20131 Milano
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48
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Mammadova GZ, Brito I, Cárdenas A. Crystal structure of (Z)-2-(2-(1,3-dioxo-1-(phenylamino)butan-2-ylidene)hydrazineyl) terephthalic acid-dimethylsulfoxide (1/1), C18H15N3O6 ⋅ C2H6OS. Z KRIST-NEW CRYST ST 2018. [DOI: 10.1515/ncrs-2018-0190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractC18H15N3O6 ⋅ C2H6OS, P21/c (no. 14), a = 15.762(9) Å, v = 6.013(4) Å, c = 22.264(11) Å, β = 103.522(19)°, V = 2052(2) Å3, Z = 4, Rgt(F) = 0.0484, wRref(F2) = 0.1348, T = 296(2) K.
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Affiliation(s)
- Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov Str. 23, Az 1148, Baku, Azerbaijan
| | - Iván Brito
- Departamento de Química, Facultad de Ciencias Básicas, Universidad de Antofagasta, Casilla 170, Antofagasta, Chile
| | - Alejandro Cárdenas
- Departamento de Física, Facultad de Ciencias Básicas, Universidad de Antofagasta, Casilla 170, Antofagasta, Chile
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49
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Karmakar A, Rúbio GMDM, Guedes da Silva MFC, Pombeiro AJL. Synthesis of Metallomacrocycle and Coordination Polymers with Pyridine-Based Amidocarboxylate Ligands and Their Catalytic Activities towards the Henry and Knoevenagel Reactions. ChemistryOpen 2018; 7:865-877. [PMID: 30410851 PMCID: PMC6217112 DOI: 10.1002/open.201800170] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2018] [Indexed: 01/06/2023] Open
Abstract
The reactions of 3,3'-{(pyridine-2,6-dicarbonyl)bis(azanediyl)}dibenzoic acid (H2L) with zinc(II), cadmium(II), and samarium(III) nitrates were studied, and the obtained compounds, [Zn(1κO:2κO'-L)(H2O)2] n (1), [Cd(1κO 2:2κO 2-L)(H2O)2]2 ⋅6n H2O⋅ n C4H8O2 ⋅1.5n DMF (2), and [Sm(1κO:2κO'O'':3κO'''-L)(NO3)(H2O)(dmf)] n ⋅ n DMF (3), were characterized by elemental analysis, FTIR spectroscopy, thermogravimetric analysis, and X-ray single-crystal diffraction. Compounds 1 and 3 have 1D zigzag- and double-chain-type structures, respectively, whereas 2 features a dinuclear metallomacrocyclic complex. The ligand (L2-) orients in different conformations, that is, syn-syn for 1 and anti-anti for 2 and 3. Compound 1 is the first example in which the syn-syn conformation for this ligand has been observed. These compounds act as heterogeneous catalysts for the nitroaldol (Henry; in water medium) and Knoevenagel condensation reactions of different aldehydes, and the most effective is zinc coordination polymer 1. Recyclability, heterogeneity, and size-selectivity tests were performed, which showed that the catalyst was highly active over at least four recycling runs.
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Affiliation(s)
- Anirban Karmakar
- Centro de Química EstruturalInstituto Superior TécnicoUniversidade de LisboaAv. Rovisco Pais1049-001LisbonPortugal
| | - Guilherme M. D. M. Rúbio
- Centro de Química EstruturalInstituto Superior TécnicoUniversidade de LisboaAv. Rovisco Pais1049-001LisbonPortugal
| | - M. Fátima C. Guedes da Silva
- Centro de Química EstruturalInstituto Superior TécnicoUniversidade de LisboaAv. Rovisco Pais1049-001LisbonPortugal
| | - Armando J. L. Pombeiro
- Centro de Química EstruturalInstituto Superior TécnicoUniversidade de LisboaAv. Rovisco Pais1049-001LisbonPortugal
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50
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Kinzhalov MA, Baykov SV, Novikov AS, Haukka M, Boyarskiy VP. Intermolecular hydrogen bonding H···Cl in crystal structure of palladium(II)-bis(diaminocarbene) complex. Z KRIST-CRYST MATER 2018. [DOI: 10.1515/zkri-2018-2100] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Abstract
The reaction of bis(isocyanide)palladium complex cis-[PdCl2(CNXyl)2] (Xyl=2,6-Me2C6H3) with excess of 4,5-dichlorobenzene-1,2-amine in a C2H4Cl2/MeOH mixture affords monocationic bis(diaminocarbene) complex cis-[PdClC{(NHXyl)=NHC6H2Cl2
NH2}{C(NHXyl)=NHC6H2Cl2NH2}]Cl (3) in moderate yield (42%). Complex 3 exists in the solid phase in the H-bonded dimeric associate of two single charged organometallic cations and two chloride anions according to X-ray diffraction data. The Hirshfeld surface analysis for the X-ray structure of 3 reveals that the crystal packing is determined primarily by intermolecular contacts H–Cl, H–H, and H–C. The intermolecular hydrogen bonds N–H···Cl and C–H···Cl in the H-bonded dimeric associate of 3 were studied by DFT calculations and topological analysis of the electron density distribution within the framework of QTAIM method, and estimated energies of these supramolecular contacts vary from 1.6 to 9.1 kcal/mol. Such non-covalent bonding means that complex 3 is an anionic receptor for the chloride anions.
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Affiliation(s)
- Mikhail A. Kinzhalov
- Saint Petersburg State University , Universitetskaya Nab. 7/9 , St. Petersburg 199034 , Russian Federation
| | - Sergey V. Baykov
- Saint Petersburg State University , Universitetskaya Nab. 7/9 , St. Petersburg 199034 , Russian Federation
| | - Alexander S. Novikov
- Saint Petersburg State University , Universitetskaya Nab. 7/9 , St. Petersburg 199034 , Russian Federation
| | - Matti Haukka
- Department of Chemistry , University of Jyväskylä , P.O. Box 35 , Jyväskylä FI-40014 , Finland
| | - Vadim P. Boyarskiy
- Saint Petersburg State University , Universitetskaya Nab. 7/9 , St. Petersburg 199034 , Russian Federation
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