1
|
Chakraborty A, Das L. Investigating the conformers of 1, 2, 3, 4-tetrahydroquinoxaline: A combined theoretical and experimental investigation through potential energy surface studies, FT-IR and UV–Vis absorption measurements. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128064] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
|
2
|
Dey G, Chakraborty A. Tautomers of homophthalic anhydride in the ground and excited electronic states: analysis through energy, hardness and vibrational signatures. J Mol Model 2020; 26:173. [PMID: 32524411 DOI: 10.1007/s00894-020-04411-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 05/06/2020] [Indexed: 11/29/2022]
Abstract
The keto-enol tautomerisation in homophthalic anhydride (HA) is investigated in the ground (S0) and excited (S1) electronic states. The keto form with a dicarbonyl structure is found to be the most stable form in S0 and enol form with a monocarbonyl structure in S1 indicating an excited state intramolecular proton transfer (ESIPT) process. The computed results show consistency with the change in basis sets and methods of calculations. Apart from the two tautomers, transition states are also identified. The barrier to interconversion is found to reduce substantially in S1. Internal reaction coordinate (IRC) calculations confirm the pathway of interconversion between the two forms in S0 and S1. The observed FT-IR spectra corroborate well with our computed spectra. The appearance of two strong lines around 1800 cm-1 confirms the lowest energy structure to be the keto tautomer with a dicarbonyl form in S0. Our computations corroborate well with the crystal structure data for an analogous molecule. Electron distribution in HOMO and LUMO indicate the excitation process as π → π* in nature. The qualitative chemical concepts like hardness and electrophilicity are calculated to estimate the stability of the tautomers. The energy and hardness profiles with the variation of IRC are opposite to each other, verifying the principle of maximum hardness.
Collapse
Affiliation(s)
- Goutam Dey
- Department of Physics, The University of Burdwan, Golapbag Campus, Burdwan, West Bengal, 713104, India
- Department of Physics, Darjeeling Government College, Hill Cart Road, Darjeeling, West Bengal, 734101, India
| | - Abhijit Chakraborty
- Department of Physics, The University of Burdwan, Golapbag Campus, Burdwan, West Bengal, 713104, India.
| |
Collapse
|
4
|
Abstract
Estimating the range of three-dimensional structures (conformations) that are available to a molecule is a key component of computer-aided drug design. Quantum mechanical simulation offers improved accuracy over forcefield methods, but at a high computational cost. The question is whether this increased cost can be justified in a context in which high-throughput analysis of large numbers of molecules is often key. This chapter discusses the application of quantum mechanics to conformational searching, with a focus on three key challenges: (1) the generation of ensembles that include a good approximation to a molecule's bioactive conformation at as prominent a ranking as possible; (2) rational analysis and modification of a pre-established bioactive conformation in terms of its energetics; and (3) approximation of real solution-phase conformational ensembles in tandem with NMR data. The impact of QM on the high-throughput application (1) is debatable, meaning that for the moment its primary application is still lower-throughput applications such as (2) and (3). The optimal choice of QM method is also discussed. Rigorous benchmarking suggests that DFT methods are only acceptable when used with large basis sets, but a trickle of papers continue to obtain useful results with relatively low-cost methods, leading to a dilemma that the literature has yet to fully resolve.
Collapse
|
5
|
Tshitenge DT, Bruhn T, Feineis D, Schmidt D, Mudogo V, Kaiser M, Brun R, Würthner F, Awale S, Bringmann G. Ealamines A-H, a Series of Naphthylisoquinolines with the Rare 7,8'-Coupling Site, from the Congolese Liana Ancistrocladus ealaensis, Targeting Pancreatic Cancer Cells. JOURNAL OF NATURAL PRODUCTS 2019; 82:3150-3164. [PMID: 31630523 DOI: 10.1021/acs.jnatprod.9b00755] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
From the twigs and leaves of the Central African liana Ancistrocladus ealaensis (Ancistrocladaceae), a series of ten 7,8'-coupled naphthylisoquinoline alkaloids were isolated, comprising eight new compounds, named ealamines A-H (4a, 4b, 5-10), and two known ones, 6-O-demethylancistrobrevine A (11) and yaoundamine A (12), which had previously been found in related African Ancistrocladus species. Only one of the new compounds within this series, ealamine H (10), is a typical Ancistrocladaceae-type alkaloid, with 3S-configuration at C-3 and an oxygen function at C-6, whereas seven of the new alkaloids are the first 7,8'-linked "hybrid-type" naphthylisoquinoline alkaloids, i.e., 3R-configured and 6-oxygenated in the tetrahydroisoquinoline part. The discovery of such a broad series of 7,8'-coupled naphthyltetrahydroisoquinolines is unprecedented, because representatives of this subclass of alkaloids are normally found in Nature quite rarely. The stereostructures of the new ealamines were assigned by HRESIMS, 1D and 2D NMR, oxidative degradation, and experimental and quantum-chemical ECD investigations, and-in the case of ealamine A (4a)-also confirmed by X-ray diffraction analysis. Ealamines A-D exhibited distinct-and specific-antiplasmodial activities, and they displayed pronounced preferential cytotoxic effects toward PANC-1 human pancreatic cancer cells in nutrient-deprived medium, without causing toxicity under normal, nutrient-rich conditions, with ealamine C (5) as the most potent agent.
Collapse
Affiliation(s)
- Dieudonné Tshitenge Tshitenge
- Institute of Organic Chemistry , University of Würzburg , Am Hubland , D-97074 Würzburg , Germany
- Faculty of Pharmaceutical Sciences , University of Kinshasa , B.P. 212 Kinshasa XI, Democratic Republic of the Congo
- Medicinal Chemistry , Bayer AG, Pharmaceuticals , Aprather Weg 18a , D-42096 Wuppertal , Germany
| | - Torsten Bruhn
- Institute of Organic Chemistry , University of Würzburg , Am Hubland , D-97074 Würzburg , Germany
- Federal Institute for Risk Assessment , Max-Dohrn-Straße 8-10 , D-10589 Berlin , Germany
| | - Doris Feineis
- Institute of Organic Chemistry , University of Würzburg , Am Hubland , D-97074 Würzburg , Germany
| | - David Schmidt
- Institute of Organic Chemistry , University of Würzburg , Am Hubland , D-97074 Würzburg , Germany
| | - Virima Mudogo
- Faculté des Sciences , Université de Kinshasa , B.P. 202 , Kinshasa XI, Democratic Republic of the Congo
| | - Marcel Kaiser
- Swiss Tropical and Public Health Institute , Socinstrasse 57 , CH-4002 Basel , Switzerland
- University of Basel , Petersplatz 1 , CH-4003 Basel , Switzerland
| | - Reto Brun
- Swiss Tropical and Public Health Institute , Socinstrasse 57 , CH-4002 Basel , Switzerland
- University of Basel , Petersplatz 1 , CH-4003 Basel , Switzerland
| | - Frank Würthner
- Institute of Organic Chemistry , University of Würzburg , Am Hubland , D-97074 Würzburg , Germany
| | - Suresh Awale
- Division of Natural Drug Discovery, Institute of Natural Medicine , University of Toyama , 2630 Sugitani , Toyama 930-0194 , Japan
| | - Gerhard Bringmann
- Institute of Organic Chemistry , University of Würzburg , Am Hubland , D-97074 Würzburg , Germany
| |
Collapse
|