1
|
Sapnik AF, Thorne MF, Castillo-Blas C, Keenan L, Johnson T, Bennett TD. Transient intermediate in the formation of an amorphous metal-organic framework. SOFT MATTER 2024; 20:2338-2347. [PMID: 38372182 DOI: 10.1039/d3sm01658g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
Amorphous metal-organic frameworks are rarely formed via direct synthesis. Our limited understanding of their atomic assembly in solution prevents full exploitation of their unique structural complexity. Here, we use in situ synchrotron X-ray absorption spectroscopy with sub-second time resolution to probe the formation of the amorphous Fe-BTC framework. Using a combination of spectral fingerprinting, linear combination analysis, and principal component analysis coupled with kinetic analyses, we reveal a multi-stage formation mechanism that, crucially, proceeds via the generation of a transient intermediate species.
Collapse
Affiliation(s)
- Adam F Sapnik
- Department of Materials Science and Metallurgy, University of Cambridge, Cambridge, CB3 0FS, UK.
| | - Michael F Thorne
- Department of Materials Science and Metallurgy, University of Cambridge, Cambridge, CB3 0FS, UK.
| | - Celia Castillo-Blas
- Department of Materials Science and Metallurgy, University of Cambridge, Cambridge, CB3 0FS, UK.
| | - Luke Keenan
- Diamond Light Source Ltd, Diamond House, Harwell Campus, Didcot, Oxfordshire, OX11 0DE, UK
| | - Timothy Johnson
- Johnson Matthey Technology Centre, Blount's Court, Sonning Common, RG4 9NH, UK
| | - Thomas D Bennett
- Department of Materials Science and Metallurgy, University of Cambridge, Cambridge, CB3 0FS, UK.
| |
Collapse
|
2
|
Lopresti M, Mangolini B, Milanesio M, Caliandro R, Palin L. Multivariate versus traditional quantitative phase analysis of X-ray powder diffraction and fluorescence data of mixtures showing preferred orientation and microabsorption. J Appl Crystallogr 2022; 55:837-850. [PMID: 35974739 PMCID: PMC9348868 DOI: 10.1107/s1600576722004708] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 05/03/2022] [Indexed: 12/03/2022] Open
Abstract
In materials and earth science, but also in chemistry, pharmaceutics and engineering, the quantification of elements and crystal phases in solid samples is often essential for a full characterization of materials. The most frequently used techniques for this purpose are X-ray fluorescence (XRF) for elemental analysis and X-ray powder diffraction (XRPD) for phase analysis. In both methods, relations between signal and quantity do exist but they are expressed in terms of complex equations including many parameters related to both sample and instruments, and the dependence on the active element or phase amounts to be determined is convoluted among those parameters. Often real-life samples hold relations not suitable for a direct quantification and, therefore, estimations based only on the values of the relative intensities are affected by large errors. Preferred orientation (PO) and microabsorption (MA) in XRPD cannot usually be avoided, and traditional corrections in Rietveld refinement, such as the Brindley MA correction, are not able, in general, to restore the correct phase quantification. In this work, a multivariate approach, where principal component analysis is exploited alone or combined with regression methods, is used on XRPD profiles collected on ad hoc designed mixtures to face and overcome the typical problems of traditional approaches. Moreover, the partial or no known crystal structure (PONKCS) method was tested on XRPD data, as an example of a hybrid approach between Rietveld and multivariate approaches, to correct for the MA effect. Particular attention is given to the comparison and selection of both method and pre-process, the two key steps for good performance when applying multivariate methods to obtain reliable quantitative estimations from XRPD data, especially when MA and PO are present. A similar approach was tested on XRF data to deal with matrix effects and compared with the more classical fundamental-parameter approach. Finally, useful indications to overcome the difficulties of the general user in managing the parameters for a successful application of multivariate approaches for XRPD and XRF data analysis are given.
Collapse
Affiliation(s)
- Mattia Lopresti
- Università del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Viale T. Michel 11, 15121 Alessandria, Italy
| | - Beatrice Mangolini
- Università del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Viale T. Michel 11, 15121 Alessandria, Italy
| | - Marco Milanesio
- Università del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Viale T. Michel 11, 15121 Alessandria, Italy
| | - Rocco Caliandro
- Institute of Crystallography, CNR, via Amendola 122/o, 70126 Bari, Italy
| | - Luca Palin
- Università del Piemonte Orientale, Dipartimento di Scienze e Innovazione Tecnologica, Viale T. Michel 11, 15121 Alessandria, Italy
- Nova Res s.r.l., Via D. Bello 3, 28100 Novara, Italy
| |
Collapse
|
3
|
Sapnik AF, Bechis I, Bumstead AM, Johnson T, Chater PA, Keen DA, Jelfs KE, Bennett TD. Multivariate analysis of disorder in metal-organic frameworks. Nat Commun 2022; 13:2173. [PMID: 35449202 PMCID: PMC9023516 DOI: 10.1038/s41467-022-29849-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 03/30/2022] [Indexed: 12/04/2022] Open
Abstract
The rational design of disordered frameworks is an appealing route to target functional materials. However, intentional realisation of such materials relies on our ability to readily characterise and quantify structural disorder. Here, we use multivariate analysis of pair distribution functions to fingerprint and quantify the disorder within a series of compositionally identical metal–organic frameworks, possessing different crystalline, disordered, and amorphous structures. We find this approach can provide powerful insight into the kinetics and mechanism of structural collapse that links these materials. Our methodology is also extended to a very different system, namely the melting of a zeolitic imidazolate framework, to demonstrate the potential generality of this approach across many areas of disordered structural chemistry. Structural disorder in materials is challenging to characterise. Here, the authors use multivariate analysis of atomic pair distribution functions to study structural collapse and melting of metal–organic frameworks, revealing powerful mechanistic and kinetic insight.
Collapse
Affiliation(s)
- Adam F Sapnik
- Department of Materials Science and Metallurgy, University of Cambridge, Cambridge, CB3 0FS, UK
| | - Irene Bechis
- Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, White City Campus, London, W12 0BZ, UK
| | - Alice M Bumstead
- Department of Materials Science and Metallurgy, University of Cambridge, Cambridge, CB3 0FS, UK
| | - Timothy Johnson
- Johnson Matthey Technology Centre, Blount's Court, Sonning Common, Reading, RG4 9NH, UK
| | - Philip A Chater
- Diamond Light Source Ltd, Diamond House, Harwell Campus, Didcot, Oxfordshire, OX11 0DE, UK
| | - David A Keen
- ISIS Neutron and Muon Facility, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, OX11 0QX, UK
| | - Kim E Jelfs
- Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, White City Campus, London, W12 0BZ, UK
| | - Thomas D Bennett
- Department of Materials Science and Metallurgy, University of Cambridge, Cambridge, CB3 0FS, UK.
| |
Collapse
|
4
|
Belviso BD, Marin F, Fuertes S, Sicilia V, Rizzi R, Ciriaco F, Cappuccino C, Dooryhee E, Falcicchio A, Maini L, Altomare A, Caliandro R. Structural Insights into the Vapochromic Behavior of Pt- and Pd-Based Compounds. Inorg Chem 2021; 60:6349-6366. [PMID: 33856202 DOI: 10.1021/acs.inorgchem.1c00081] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Anionic complexes having vapochromic behavior are investigated: [K(H2O)][M(ppy)(CN)2], [K(H2O)][M(bzq)(CN)2], and [Li(H2O)n][Pt(bzq)(CN)2], where ppy = 2-phenylpyridinate, bzq = 7,8-benzoquinolate, and M = Pt(II) or Pd(II). These hydrated potassium/lithium salts exhibit a change in color upon being heated to 380 K, and they transform back into the original color upon absorption of water molecules from the environment. The challenging characterization of their structure in the vapochromic transition has been carried out by combining several experimental techniques, despite the availability of partially ordered and/or impure crystalline material. Room-temperature single-crystal and powder X-ray diffraction investigation revealed that [K(H2O)][Pt(ppy)(CN)2] crystallizes in the Pbca space group and is isostructural to [K(H2O)][Pd(ppy)(CN)2]. Variable-temperature powder X-ray diffraction allowed the color transition to be related to changes in the diffraction pattern and the decrease in sample crystallinity. Water loss, monitored by thermogravimetric analysis, occurs in two stages, well separated for potassium Pt compounds and strongly overlapped for potassium Pd compounds. The local structure of potassium compounds was monitored by in situ pair distribution function (PDF) measurements, which highlighted changes in the intermolecular distances due to a rearrangement of the crystal packing upon vapochromic transition. A reaction coordinate describing the structural changes was extracted for each compound by multivariate analysis applied to PDF data. It contributed to the study of the kinetics of the structural changes related to the vapochromic transition, revealing its dependence on the transition metal ion. Instead, the ligand influences the critical temperature, higher for ppy than for bzq, and the inclination of the molecular planes with respect to the unit cell planes, higher for bzq than for ppy. The first stage of water loss triggers a unit cell contraction, determined by the increase in the b axis length and the decrease in the a (for ppy) or c (for bzq) axis lengths. Consequent interplane distance variations and in-plane roto-translations weaken the π-stacking of the room-temperature structure and modify the distances and angles of Pt(II)/Pd(II) chains. The curve describing the intermolecular Pt(II)/Pd(II) distances as a function of temperature, validated by X-ray absorption spectroscopy, was found to reproduce the coordinate reaction determined by the model-free analysis.
Collapse
Affiliation(s)
| | - Francesco Marin
- Dipartimento di Chimica "Giacomo Ciamician", Università di Bologna, Via Selmi 2, 40126 Bologna, Italy
| | - Sara Fuertes
- Departamento de Química Iorgánica, Universidad de Zaragoza-CSIC, 50009 Zaragoza, Spain
| | - Violeta Sicilia
- Departamento de Química Iorgánica, Universidad de Zaragoza-CSIC, 50009 Zaragoza, Spain
| | - Rosanna Rizzi
- Institute of Crystallography, CNR, via Amendola 122/o, Bari 70126, Italy
| | - Fulvio Ciriaco
- Dipartimento di Chimica, Università di Bari, via Orabona, 70125 Bari, Italy
| | - Chiara Cappuccino
- Department of Chemical Science, Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
| | - Eric Dooryhee
- NSLS II, Photon Science Division, Brookhaven National Laboratory, Upton, New York 11973, United States
| | - Aurelia Falcicchio
- Institute of Crystallography, CNR, via Amendola 122/o, Bari 70126, Italy
| | - Lucia Maini
- Dipartimento di Chimica "Giacomo Ciamician", Università di Bologna, Via Selmi 2, 40126 Bologna, Italy
| | - Angela Altomare
- Institute of Crystallography, CNR, via Amendola 122/o, Bari 70126, Italy
| | - Rocco Caliandro
- Institute of Crystallography, CNR, via Amendola 122/o, Bari 70126, Italy
| |
Collapse
|
5
|
Abstract
Multivariate analysis (MA) is becoming a fundamental tool for processing in an efficient way the large amount of data collected in X-ray diffraction experiments. Multi-wedge data collections can increase the data quality in case of tiny protein crystals; in situ or operando setups allow investigating changes on powder samples occurring during repeated fast measurements; pump and probe experiments at X-ray free-electron laser (XFEL) sources supply structural characterization of fast photo-excitation processes. In all these cases, MA can facilitate the extraction of relevant information hidden in data, disclosing the possibility of automatic data processing even in absence of a priori structural knowledge. MA methods recently used in the field of X-ray diffraction are here reviewed and described, giving hints about theoretical background and possible applications. The use of MA in the framework of the modulated enhanced diffraction technique is described in detail.
Collapse
|
6
|
Caliandro R, Altamura D, Belviso BD, Rizzo A, Masi S, Giannini C. Investigating temperature-induced structural changes of lead halide perovskites by in situ X-ray powder diffraction. J Appl Crystallogr 2019. [DOI: 10.1107/s160057671901166x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
In situ X-ray diffraction experiments offer a unique opportunity to investigate structural dynamics at atomic resolution, by collecting several patterns in an appropriate time sequence (data matrix) while varying the applied stimulus (e.g. temperature changes). Individual measurements can be processed independently by refinement procedures that are based on prior knowledge of the average structure of each crystal phase present in the sample. If the refinement converges, parameters of the average structural model can be assessed and studied as a function of the stimulus variations. An alternative approach consists in applying a multivariate analysis to the data matrix as a whole. Methods such as principal component analysis (PCA) and phase-sensitive detection perform fast, blind and model-independent calculations that can be used for on-site analysis to identify trends in data actually related to the applied stimulus. Both classical and multivariate approaches are here applied to the in situ X-ray diffraction pair distribution function (PDF) setup on two samples of the hybrid perovskite methylammonium (MA) lead iodide obtained by different synthetic routes, subjected to temperature variations. The PDF refinement allows assessing the occurrence of temperature-induced rotations of the PbI6 octahedra and variations in the relative amount of MAPbI3 and intermediate PbI2–MAI–DMSO (dimethyl sulfoxide) crystal phases. A change in the orientation of the methylammonium molecule with temperature is also characterized. Results of the multivariate analysis tools, which include a newly introduced space-dependent variant of PCA, are described, interpreted and validated against simulated data, and their specificity and relation to refinement results are highlighted. The interaction between nearby octahedra is identified as the driving force for the tetragonal-to-cubic phase transition, and three fundamental trends in data having different temperature behaviours are unveiled: (i) irreversible weight-fraction variations of the MAPbI3 and PbI2–MAI–DMSO phases; (ii) reversible structural changes related to the MAPbI3 crystalline phase and its lattice distortion in the ab plane, having the same frequency as the temperature variations; (iii) reversible lattice distortion along the c axis, occurring at twice the frequency of the temperature changes.
Collapse
|