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Cook EN, Courter IM, Dickie DA, Machan CW. Controlling product selectivity during dioxygen reduction with Mn complexes using pendent proton donor relays and added base. Chem Sci 2024; 15:4478-4488. [PMID: 38516070 PMCID: PMC10952101 DOI: 10.1039/d3sc02611f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Accepted: 02/12/2024] [Indexed: 03/23/2024] Open
Abstract
The catalytic reduction of dioxygen (O2) is important in biological energy conversion and alternative energy applications. In comparison to Fe- and Co-based systems, examples of catalytic O2 reduction by homogeneous Mn-based systems is relatively sparse. Motivated by this lack of knowledge, two Mn-based catalysts for the oxygen reduction reaction (ORR) containing a bipyridine-based non-porphyrinic ligand framework have been developed to evaluate how pendent proton donor relays alter activity and selectivity for the ORR, where Mn(p-tbudhbpy)Cl (1) was used as a control complex and Mn(nPrdhbpy)Cl (2) contains a pendent -OMe group in the secondary coordination sphere. Using an ammonium-based proton source, N,N'-diisopropylethylammonium hexafluorophosphate, we analyzed catalytic activity for the ORR: 1 was found to be 64% selective for H2O2 and 2 is quantitative for H2O2, with O2 binding to the reduced Mn(ii) center being the rate-determining step. Upon addition of the conjugate base, N,N'-diisopropylethylamine, the observed catalytic selectivity of both 1 and 2 shifted to H2O as the primary product. Interestingly, while the shift in selectivity suggests a change in mechanism for both 1 and 2, the catalytic activity of 2 is substantially enhanced in the presence of base and the rate-determining step becomes the bimetallic cleavage of the O-O bond in a Mn-hydroperoxo species. These data suggest that the introduction of pendent relay moieties can improve selectivity for H2O2 at the expense of diminished reaction rates from strong hydrogen bonding interactions. Further, although catalytic rate enhancements are observed with a change in product selectivity when base is added to buffer proton activity, the pendent relays stabilize dimer intermediates, limiting the maximum rate.
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Affiliation(s)
- Emma N Cook
- Department of Chemistry University of Virginia PO Box 400319 McCormick Rd Charlottesville VA 22904-4319 USA
| | - Ian M Courter
- Department of Chemistry University of Virginia PO Box 400319 McCormick Rd Charlottesville VA 22904-4319 USA
| | - Diane A Dickie
- Department of Chemistry University of Virginia PO Box 400319 McCormick Rd Charlottesville VA 22904-4319 USA
| | - Charles W Machan
- Department of Chemistry University of Virginia PO Box 400319 McCormick Rd Charlottesville VA 22904-4319 USA
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2
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Vitillo JG, Cramer CJ, Gagliardi L. Multireference Methods are Realistic and Useful Tools for Modeling Catalysis. Isr J Chem 2022. [DOI: 10.1002/ijch.202100136] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Jenny G. Vitillo
- Department of Science and High Technology and INSTM Università degli Studi dell'Insubria Via Valleggio 9 I-22100 Como Italy
| | - Christopher J. Cramer
- Underwriters Laboratories Inc. 333 Pfingsten Road Northbrook Illinois 60602 United States
| | - Laura Gagliardi
- Department of Chemistry Pritzker School of Molecular Engineering James Franck Institute University of Chicago Chicago Illinois 60637 United States
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3
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Li R, Khan FST, Hematian S. Dioxygen Reactivity of Copper(I)/Manganese(II)-Porphyrin Assemblies: Mechanistic Studies and Cooperative Activation of O 2. Molecules 2022; 27:molecules27031000. [PMID: 35164265 PMCID: PMC8839022 DOI: 10.3390/molecules27031000] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 01/24/2022] [Accepted: 01/28/2022] [Indexed: 12/04/2022] Open
Abstract
The oxidation of transition metals such as manganese and copper by dioxygen (O2) is of great interest to chemists and biochemists for fundamental and practical reasons. In this report, the O2 reactivities of 1:1 and 1:2 mixtures of [(TPP)MnII] (1; TPP: Tetraphenylporphyrin) and [(tmpa)CuI(MeCN)]+ (2; TMPA: Tris(2-pyridylmethyl)amine) in 2-methyltetrahydrofuran (MeTHF) are described. Variable-temperature (-110 °C to room temperature) absorption spectroscopic measurements support that, at low temperature, oxygenation of the (TPP)Mn/Cu mixtures leads to rapid formation of a cupric superoxo intermediate, [(tmpa)CuII(O2•-)]+ (3), independent of the presence of the manganese porphyrin complex (1). Complex 3 subsequently reacts with 1 to form a heterobinuclear μ-peroxo species, [(tmpa)CuII-(O22-)-MnIII(TPP)]+ (4; λmax = 443 nm), which thermally converts to a μ-oxo complex, [(tmpa)CuII-O-MnIII(TPP)]+ (5; λmax = 434 and 466 nm), confirmed by electrospray ionization mass spectrometry and nuclear magnetic resonance spectroscopy. In the 1:2 (TPP)Mn/Cu mixture, 4 is subsequently attacked by a second equivalent of 3, giving a bis-μ-peroxo species, i.e., [(tmpa)CuII-(O22-)-MnIV(TPP)-(O22-)-CuII(tmpa)]2+ (7; λmax = 420 nm and δpyrrolic = -44.90 ppm). The final decomposition product of the (TPP)Mn/Cu/O2 chemistry in MeTHF is [(TPP)MnIII(MeTHF)2]+ (6), whose X-ray structure is also presented and compared to literature analogs.
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Phung QM, Muchammad Y, Yanai T, Ghosh A. A DMRG/CASPT2 Investigation of Metallocorroles: Quantifying Ligand Noninnocence in Archetypal 3d and 4d Element Derivatives. JACS AU 2021; 1:2303-2314. [PMID: 34984418 PMCID: PMC8717376 DOI: 10.1021/jacsau.1c00417] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Indexed: 05/03/2023]
Abstract
Hybrid density functional theory (B3LYP) and density matrix renormalization group (DMRG) theory have been used to quantitatively compare the degree of ligand noninnocence (corrole radical character) in seven archetypal metallocorroles. The seven complexes, in decreasing order of corrole noninnocent character, are Mn[Cor]Cl > Fe[Cor]Cl > Fe[Cor](NO) > Mo[Cor]Cl2 > Ru[Cor](NO) ≈ Mn[Cor]Ph ≈ Fe[Cor]Ph ≈ 0, where [Cor] refers to the unsubstituted corrolato ligand. DMRG-based second-order perturbation theory calculations have also yielded detailed excited-state energetics data on the compounds, shedding light on periodic trends involving middle transition elements. Thus, whereas the ground state of Fe[Cor](NO) (S = 0) is best described as a locally S = 1/2 {FeNO}7 unit antiferromagnetically coupled to a corrole A' radical, the calculations confirm that Ru[Cor](NO) may be described as simply {RuNO}6-Cor3-, that is, having an innocent corrole macrocycle. Furthermore, whereas the ferromagnetically coupled S = 1{FeNO}7-Cor•2- state of Fe[Cor](NO) is only ∼17.5 kcal/mol higher than the S = 0 ground state, the analogous triplet state of Ru[Cor](NO) is higher by a far larger margin (37.4 kcal/mol) relative to the ground state. In the same vein, Mo[Cor]Cl2 exhibits an adiabatic doublet-quartet gap of 36.1 kcal/mol. The large energy gaps associated with metal-ligand spin coupling in Ru[Cor](NO) and Mo[Cor]Cl2 reflect the much greater covalent character of 4d-π interactions relative to analogous interactions involving 3d orbitals. As far as excited-state energetics is concerned, DMRG-CASPT2 calculations provide moderate validation for hybrid density functional theory (B3LYP) for qualitative purposes, but underscore the possibility of large errors (>10 kcal/mol) in interstate energy differences.
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Affiliation(s)
- Quan Manh Phung
- Department
of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
- Institute
of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
| | - Yasin Muchammad
- Department
of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
| | - Takeshi Yanai
- Department
of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
- Institute
of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
| | - Abhik Ghosh
- Department
of Chemistry, UiT-The Arctic University
of Norway, N-9037 Tromsø, Norway
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5
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Schwedtmann K, Quest M, Guddorf BJ, Keuter J, Hepp A, Feldt M, Droste J, Hansen MR, Lips F. Reactivity of the Bicyclic Amido-Substituted Silicon(I) Ring Compound Si 4 {N(SiMe 3 )Mes} 4 with FLP-Type Character. Chemistry 2021; 27:17361-17368. [PMID: 34636454 PMCID: PMC9297995 DOI: 10.1002/chem.202103101] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Indexed: 01/13/2023]
Abstract
The bicyclic amido‐substituted silicon(I) ring compound Si4{N(SiMe3)Mes}42 (Mes=Mesityl=2,4,6‐Me3C6H2) features enhanced zwitterionic character and different reactivity from the analogous compound Si4{N(SiMe3)Dipp}41 (Dipp=2,6‐iPr2C6H3) due to the smaller mesityl substituents. In a reaction with the N‐heterocyclic carbene NHCMe4
(1,3,4,5‐tetramethyl‐imidazol‐2‐ylidene), we observe adduct formation to give Si4{N(SiMe3)Mes}4 ⋅ NHCMe4
(3). This adduct reacts further with the Lewis acid BH3 to yield the Lewis acid–base complex Si4{N(SiMe3)Mes}4 ⋅ NHCMe4
⋅ BH3 (4). Coordination of AlBr3 to 2 leads to the adduct 5. Calculated proton affinities and fluoride ion affinities reveal highly Lewis basic and very weak Lewis acidic character of the low‐valent silicon atoms in 1 and 2. This is confirmed by protonation of 1 and 2 with Brookharts acid yielding 6 and 7. Reaction with diphenylacetylene only occurs at 111 °C with 2 in toluene and is accompanied by fragmentation of 2 to afford the silacyclopropene 8 and the trisilanorbornadiene species 9.
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Affiliation(s)
- Kevin Schwedtmann
- Westfälische Wilhelms-Universität Münster Institut für Anorganische und Analytische Chemie, Corrensstraße 28-30, 48149, Münster, Germany
| | - Michael Quest
- Westfälische Wilhelms-Universität Münster Institut für Anorganische und Analytische Chemie, Corrensstraße 28-30, 48149, Münster, Germany
| | - Benedikt J Guddorf
- Westfälische Wilhelms-Universität Münster Institut für Anorganische und Analytische Chemie, Corrensstraße 28-30, 48149, Münster, Germany
| | - Jan Keuter
- Westfälische Wilhelms-Universität Münster Institut für Anorganische und Analytische Chemie, Corrensstraße 28-30, 48149, Münster, Germany
| | - Alexander Hepp
- Westfälische Wilhelms-Universität Münster Institut für Anorganische und Analytische Chemie, Corrensstraße 28-30, 48149, Münster, Germany
| | - Milica Feldt
- Westfälische Wilhelms-Universität Münster Organisch Chemisches Institut and Center for Multiscale Theory and Computation, Corrensstraße 36, 48149, Münster, Germany
| | - Jörn Droste
- Westfälische Wilhelms-Universität Münster Institut für Physikalische Chemie, Corrensstraße 28-30, 48149, Münster, Germany
| | - Michael Ryan Hansen
- Westfälische Wilhelms-Universität Münster Institut für Physikalische Chemie, Corrensstraße 28-30, 48149, Münster, Germany
| | - Felicitas Lips
- Westfälische Wilhelms-Universität Münster Institut für Anorganische und Analytische Chemie, Corrensstraße 28-30, 48149, Münster, Germany
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6
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Keuter J, Hepp A, Daniliuc CG, Feldt M, Lips F. Cycloadditionen mit einer stabilen ladungsseparierten cyclobutadienartigen Siliciumringverbindung. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202104341] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jan Keuter
- Westfälische Wilhelms-Universität Münster Institut für Anorganische and Analytische Chemie Corrensstraße 28–30 48149 Münster Deutschland
| | - Alexander Hepp
- Westfälische Wilhelms-Universität Münster Institut für Anorganische and Analytische Chemie Corrensstraße 28–30 48149 Münster Deutschland
| | - Constantin G. Daniliuc
- Westfälische Wilhelms-Universität Münster Organisch Chemisches Institut and Center for Multiscale Theory and Computation Corrensstraße 36 48149 Münster Deutschland
| | - Milica Feldt
- Westfälische Wilhelms-Universität Münster Organisch Chemisches Institut and Center for Multiscale Theory and Computation Corrensstraße 36 48149 Münster Deutschland
| | - Felicitas Lips
- Westfälische Wilhelms-Universität Münster Institut für Anorganische and Analytische Chemie Corrensstraße 28–30 48149 Münster Deutschland
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7
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Khedkar A, Roemelt M. Modern multireference methods and their application in transition metal chemistry. Phys Chem Chem Phys 2021; 23:17097-17112. [PMID: 34355719 DOI: 10.1039/d1cp02640b] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Transition metal chemistry is a challenging playground for quantum chemical methods owing to the simultaneous presence of static and dynamic electron correlation effects in many systems. Wavefunction based multireference (MR) methods constitute a physically sound and systematically improvable Ansatz to deal with this complexity but suffer from some conceptual difficulties and high computational costs. The latter problem partially arises from the unfavorable scaling of the Full Configuration Interaction (Full-CI) problem which in the majority of MR methods is solved for a subset of the molecular orbital space, the so-called active space. In the last years multiple methods such as modern variants of selected CI, Full-CI Quantum Monte Carlo (FCIQMC) and the density matrix renormalization group (DMRG) have been developed that solve the Full-CI problem approximately for a fraction of the computational cost required by conventional techniques thereby significantly extending the range of applicability of modern MR methods. This perspective review outlines recent advancements in the field of MR electronic structure methods together with the resulting chances and challenges for theoretical studies in the field of transition metal chemistry. In light of its emerging importance a special focus is put on the selection of adequate active spaces and the concomitant development of numerous selection aides in recent years.
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Affiliation(s)
- Abhishek Khedkar
- Lehrstuhl für theoretische Chemie, Ruhr-Universität Bochum, D-44780 Bochum, Germany.
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8
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Keuter J, Hepp A, Daniliuc CG, Feldt M, Lips F. Cycloadditions with a Stable Charge-Separated Cyclobutadiene-Type Amido-Substituted Silicon Ring Compound. Angew Chem Int Ed Engl 2021; 60:21761-21766. [PMID: 34255419 PMCID: PMC8518912 DOI: 10.1002/anie.202104341] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 06/28/2021] [Indexed: 11/17/2022]
Abstract
Reductive debromination of {N(SiMe3)2}SiBr3 with Rieke magnesium results in the formation of the five‐vertex silicon cluster with one bromine substituent Si5{N(SiMe3)2}5Br, 1, and the cyclobutadiene analogue 2 in a 1:1 ratio. The latter features a planar four‐membered silicon ring with a charge‐separated electronic situation. Two silicon atoms in 2 are trigonal planar and the other two trigonal pyramidal. In cycloadditions with ethylene, diethylacetylene, 1,5‐cyclooctadiene, and 2,3‐dimethyl‐1,3‐butadiene cyclic unsaturated ring compounds (3–6) were formed at room temperature in quantitative reactions. Two of the products (3 and 6) show photochemical isomerization with LED light (λ=405 nm) to afford saturated ring compounds 4 e and 6′.
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Affiliation(s)
- Jan Keuter
- Westfälische Wilhelms-Universität Münster, Institut für Anorganische and Analytische Chemie, Corrensstrasse 28-30, 48149, Münster, Germany
| | - Alexander Hepp
- Westfälische Wilhelms-Universität Münster, Institut für Anorganische and Analytische Chemie, Corrensstrasse 28-30, 48149, Münster, Germany
| | - Constantin G Daniliuc
- Westfälische Wilhelms-Universität Münster, Organisch Chemisches Institut and Center for Multiscale Theory and Computation, Corrensstrasse 36, 48149, Münster, Germany
| | - Milica Feldt
- Westfälische Wilhelms-Universität Münster, Organisch Chemisches Institut and Center for Multiscale Theory and Computation, Corrensstrasse 36, 48149, Münster, Germany
| | - Felicitas Lips
- Westfälische Wilhelms-Universität Münster, Institut für Anorganische and Analytische Chemie, Corrensstrasse 28-30, 48149, Münster, Germany
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10
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Kurtikyan TS, Hayrapetyan VA, Hovhannisyan AA, Martirosyan GG, Hovhannisyan GS, Iretskii AV, Ford PC. Nitric Oxide Dioxygenation by O 2 Adducts of Manganese Porphyrins. Inorg Chem 2020; 59:17224-17233. [PMID: 33180482 DOI: 10.1021/acs.inorgchem.0c02464] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We describe here nitric oxide dioxygenation (NOD) by the dioxygen manganese porphyrin adducts Mn(Por)(η2-O2) (Por2- = the meso-tetra-phenyl or meso-tetra-p-tolylporphyrinato dianions, TPP2- and TTP2-). The Mn(Por)(η2-O2) was assembled by adding O2 to sublimed layers of MnII(Por). When NO was introduced and the temperature was slowly raised from 80 to 120 K, new IR bands with correlated intensities grew concomitant with depletion of the υ(O2) band. Isotope labeling experiments with 18O2, 15NO, and N18O combined with DFT calculations provide the basis for identifying the initial intermediates as the six-coordinate peroxynitrito complexes (ON)Mn(Por)(η1-OONO). Further warming to room temperature led to formation of the nitrato complexes Mn(Por)(η1-ONO2), thereby demonstrating the ability of these metal centers to promote NOD. However, comparable quantities of the nitrito complexes Mn(Por)(η1-ONO) are also formed. In contrast, when the analogous reactions were initiated with the weak σ-donor ligand tetrahydrofuran or dimethyl sulfide present in the layers, formation of Mn(Por)(η1-ONO2) is strongly favored (∼90%). The latter are formed via a 6-coordinate intermediate (L)Mn(Por)(η1-ONO2) (L = THF or DMS) that loses L upon warming. These reaction patterns are compared to those observed previously with analogous iron and cobalt porphyrin complexes.
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Affiliation(s)
- Tigran S Kurtikyan
- Molecule Structure Research Centre (MSRC) of the Scientific and Technological Centre of Organic and Pharmaceutical Chemistry NAS, 0014, Yerevan, Armenia
| | - Vardan A Hayrapetyan
- Molecule Structure Research Centre (MSRC) of the Scientific and Technological Centre of Organic and Pharmaceutical Chemistry NAS, 0014, Yerevan, Armenia
| | - Astghik A Hovhannisyan
- Molecule Structure Research Centre (MSRC) of the Scientific and Technological Centre of Organic and Pharmaceutical Chemistry NAS, 0014, Yerevan, Armenia
| | - Garik G Martirosyan
- Molecule Structure Research Centre (MSRC) of the Scientific and Technological Centre of Organic and Pharmaceutical Chemistry NAS, 0014, Yerevan, Armenia
| | - Gohar Sh Hovhannisyan
- Molecule Structure Research Centre (MSRC) of the Scientific and Technological Centre of Organic and Pharmaceutical Chemistry NAS, 0014, Yerevan, Armenia
| | - Alexei V Iretskii
- Department of Chemistry, Lake Superior State University, Sault Sainte Marie, Michigan 49783, United States
| | - Peter C Ford
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, Santa Barbara, California 93106-9510, United States
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11
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Saito K, Watabe Y, Miyazaki T, Takayanagi T, Hasegawa JY. Spin-inversion mechanisms in O 2 binding to a model heme compound: A perspective from nonadiabatic wave packet calculations. J Comput Chem 2020; 41:2527-2537. [PMID: 32841410 DOI: 10.1002/jcc.26409] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Revised: 07/18/2020] [Accepted: 08/08/2020] [Indexed: 12/13/2022]
Abstract
Spin-inversion dynamics in O2 binding to a model heme complex, which consisted of Fe(II)-porphyrin and imidazole, were studied using nonadiabatic wave packet dynamics calculations. We considered three active nuclear degrees of freedom in the dynamics, including the motions along the Fe-O distance, Fe-O-O angle, and Fe out-of-plane distance. Spin-free potential energy surfaces for the singlet, triplet, quintet, and septet states were developed using density functional theory calculations, and spin-orbit coupling elements were obtained from CASSCF-level electronic structure calculations. The spin-inversion mainly occurred between the singlet state and one of the triplet states due to large spin-orbit couplings and the contributions of other states were extremely small. The present quantum dynamics calculations suggested that the narrow crossing region model plays a dominant role in the O2 binding dynamics. In addition, the one-dimensional Landau-Zener model underestimated the nonadiabatic transition probability.
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Affiliation(s)
- Kohei Saito
- Department of Chemistry, Saitama University, Saitama City, Saitama, Japan
| | - Yuya Watabe
- Department of Chemistry, Saitama University, Saitama City, Saitama, Japan
| | - Takaaki Miyazaki
- Department of Chemistry, Saitama University, Saitama City, Saitama, Japan
| | | | - Jun-Ya Hasegawa
- Institute for Catalysis, Hokkaido University, Sapporo, Hokkaido, Japan
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12
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Aquilante F, Autschbach J, Baiardi A, Battaglia S, Borin VA, Chibotaru LF, Conti I, De Vico L, Delcey M, Fdez Galván I, Ferré N, Freitag L, Garavelli M, Gong X, Knecht S, Larsson ED, Lindh R, Lundberg M, Malmqvist PÅ, Nenov A, Norell J, Odelius M, Olivucci M, Pedersen TB, Pedraza-González L, Phung QM, Pierloot K, Reiher M, Schapiro I, Segarra-Martí J, Segatta F, Seijo L, Sen S, Sergentu DC, Stein CJ, Ungur L, Vacher M, Valentini A, Veryazov V. Modern quantum chemistry with [Open]Molcas. J Chem Phys 2020; 152:214117. [PMID: 32505150 DOI: 10.1063/5.0004835] [Citation(s) in RCA: 220] [Impact Index Per Article: 55.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
MOLCAS/OpenMolcas is an ab initio electronic structure program providing a large set of computational methods from Hartree-Fock and density functional theory to various implementations of multiconfigurational theory. This article provides a comprehensive overview of the main features of the code, specifically reviewing the use of the code in previously reported chemical applications as well as more recent applications including the calculation of magnetic properties from optimized density matrix renormalization group wave functions.
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Affiliation(s)
- Francesco Aquilante
- Theory and Simulation of Materials (THEOS) and National Centre for Computational Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, Buffalo, New York 14260-3000, USA
| | - Alberto Baiardi
- Laboratory of Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Stefano Battaglia
- Department of Chemistry - BMC, Uppsala University, P.O. Box 576, SE-751 23 Uppsala, Sweden
| | - Veniamin A Borin
- Fritz Haber Center for Molecular Dynamics Research, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel
| | - Liviu F Chibotaru
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Irene Conti
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, Bologna I-40136, Italy
| | - Luca De Vico
- Dipartimento di Biotecnologie, Chimica e Farmacia, Università degli Studi di Siena, via Aldo Moro 2, 53100 Siena, Italy
| | - Mickaël Delcey
- Department of Chemistry - Ångström Laboratory, Uppsala University, SE-751 21 Uppsala, Sweden
| | - Ignacio Fdez Galván
- Department of Chemistry - BMC, Uppsala University, P.O. Box 576, SE-751 23 Uppsala, Sweden
| | - Nicolas Ferré
- Aix-Marseille University, CNRS, Institut Chimie Radicalaire, Marseille, France
| | - Leon Freitag
- Laboratory of Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Marco Garavelli
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, Bologna I-40136, Italy
| | - Xuejun Gong
- Department of Chemistry, University of Singapore, 3 Science Drive 3, 117543 Singapore
| | - Stefan Knecht
- Laboratory of Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Ernst D Larsson
- Division of Theoretical Chemistry, Lund University, P.O. Box 124, Lund 22100, Sweden
| | - Roland Lindh
- Department of Chemistry - BMC, Uppsala University, P.O. Box 576, SE-751 23 Uppsala, Sweden
| | - Marcus Lundberg
- Department of Chemistry - Ångström Laboratory, Uppsala University, SE-751 21 Uppsala, Sweden
| | - Per Åke Malmqvist
- Division of Theoretical Chemistry, Lund University, P.O. Box 124, Lund 22100, Sweden
| | - Artur Nenov
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, Bologna I-40136, Italy
| | - Jesper Norell
- Department of Physics, AlbaNova University Center, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Michael Odelius
- Department of Physics, AlbaNova University Center, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Massimo Olivucci
- Dipartimento di Biotecnologie, Chimica e Farmacia, Università degli Studi di Siena, via Aldo Moro 2, 53100 Siena, Italy
| | - Thomas B Pedersen
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway
| | - Laura Pedraza-González
- Dipartimento di Biotecnologie, Chimica e Farmacia, Università degli Studi di Siena, via Aldo Moro 2, 53100 Siena, Italy
| | - Quan M Phung
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya 464-8602, Japan
| | - Kristine Pierloot
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Markus Reiher
- Laboratory of Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Igor Schapiro
- Fritz Haber Center for Molecular Dynamics Research, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel
| | - Javier Segarra-Martí
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, White City Campus, 80 Wood Lane, London W12 0BZ, United Kingdom
| | - Francesco Segatta
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, Bologna I-40136, Italy
| | - Luis Seijo
- Departamento de Química, Instituto Universitario de Ciencia de Materiales Nicolás Cabrera, and Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Saumik Sen
- Fritz Haber Center for Molecular Dynamics Research, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel
| | | | - Christopher J Stein
- Laboratory of Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Liviu Ungur
- Department of Chemistry, University of Singapore, 3 Science Drive 3, 117543 Singapore
| | - Morgane Vacher
- Laboratoire CEISAM - UMR CNRS 6230, Université de Nantes, 44300 Nantes, France
| | - Alessio Valentini
- Theoretical Physical Chemistry, Research Unit MolSys, Université de Liège, Allée du 6 Août, 11, 4000 Liège, Belgium
| | - Valera Veryazov
- Division of Theoretical Chemistry, Lund University, P.O. Box 124, Lund 22100, Sweden
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13
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Saito K, Watabe Y, Fujihara T, Takayanagi T, Hasegawa JY. Spin-inversion mechanisms in O 2 binding to a model heme complex revisited by density function theory calculations. J Comput Chem 2020; 41:1130-1138. [PMID: 32020659 DOI: 10.1002/jcc.26159] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 01/12/2020] [Accepted: 01/16/2020] [Indexed: 01/10/2023]
Abstract
Spin-inversion mechanisms in O2 binding to a model heme complex, consisting of Fe(II)-porphyrin and imidazole, were investigated using density-functional theory calculations. First, we applied the recently proposed mixed-spin Hamiltonian method to locate spin-inversion structures between different total spin multiplicities. Nine spin-inversion structures were successfully optimized for the singlet-triplet, singlet-quintet, triplet-quintet, and quintet-septet spin-inversion processes. We found that the singlet-triplet spin-inversion points are located around the potential energy surface region at short Fe-O distances, whereas the singlet-quintet and quintet-septet spin-inversion points are located at longer Fe-O distances. This suggests that both narrow and broad crossing models play roles in O2 binding to the Fe-porphyrin complex. To further understand spin-inversion mechanisms, we performed on-the-fly Born-Oppenheimer molecular dynamics calculations. The reaction coordinates, which are correlated to the spin-inversion dynamics between different spin multiplicities, are also discussed.
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Affiliation(s)
- Kohei Saito
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama City, Saitama, 338-8570, Japan
| | - Yuya Watabe
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama City, Saitama, 338-8570, Japan
| | - Takashi Fujihara
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama City, Saitama, 338-8570, Japan
| | - Toshiyuki Takayanagi
- Department of Chemistry, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama City, Saitama, 338-8570, Japan
| | - Jun-Ya Hasegawa
- Instituteof Catalysis, Hokkaido University, Kita 21, Nishi 10, Kita-ku, Sapporo, Hokkaido, 001-0021, Japan
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14
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Sacramento JJD, Goldberg DP. Oxidation of an indole substrate by porphyrin iron(iii) superoxide: relevance to indoleamine and tryptophan 2,3-dioxygenases. Chem Commun (Camb) 2020; 56:3089-3092. [PMID: 32052805 PMCID: PMC7065957 DOI: 10.1039/c9cc10019a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Reaction of FeIII(O2˙-)(TPP) with 2,3-dimethylindole at -40 °C gives the ring-opened, dioxygenated N-(2-acetyl-phenyl)-acetamide product. The reaction was monitored in situ by low-temperature UV-vis and 1H NMR spectroscopies. This work demonstrates that a discrete iron(iii)(superoxo) porphyrin is competent to carry out indole oxidation, as proposed for the tryptophan and indoleamine 2,3-dioxygenases.
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Affiliation(s)
- Jireh Joy D Sacramento
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA.
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA.
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15
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Affiliation(s)
- Charles W. Machan
- University of Virginia, McCormick Road,
PO Box 400319, Charlottesville, Virginia 22904-4319, United States
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16
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Stoneburner SJ, Truhlar DG, Gagliardi L. Transition Metal Spin-State Energetics by MC-PDFT with High Local Exchange. J Phys Chem A 2020; 124:1187-1195. [PMID: 31962045 DOI: 10.1021/acs.jpca.9b10772] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The energetics of the spin states of transition metal complexes have been explored with a variety of electronic structure methods, but the calculations require a compromise between accuracy and affordability. In this work, the spin splittings of several iron complexes are studied with multiconfiguration pair-density functional theory (MC-PDFT). The results are compared to previously published results obtained by complete active space second-order perturbation theory (CASPT2) and CASPT2 with coupled-cluster semicore correlation (CASPT2/CC). In contrast to CASPT2's systematic overstabilization of high-spin states with respect to the CASPT2/CC reference, MC-PDFT with the tPBE on-top functional understabilizes high-spin states. This systematic understabilization is largely corrected by revising the exchange and correlation contributions to the on-top functional using the high local-exchange approximation (tPBE-HLE). Moreover, tPBE-HLE correctly predicts the spin of the ground state in most cases, while CASPT2 incorrectly predicts high-spin ground states in all cases. This is encouraging for practical work because tPBE and tPBE-HLE are faster than CASPT2 by a factor of 50 even in a moderately sized example.
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Affiliation(s)
- Samuel J Stoneburner
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , 207 Pleasant Street SE , Minneapolis , Minnesota 55455-0431 , United States
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , 207 Pleasant Street SE , Minneapolis , Minnesota 55455-0431 , United States
| | - Laura Gagliardi
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , 207 Pleasant Street SE , Minneapolis , Minnesota 55455-0431 , United States
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17
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Phung QM, Pierloot K. Electronic Structure of N-Bridged High-Valent Diiron-Oxo. Chemistry 2019; 25:12491-12496. [PMID: 31313861 DOI: 10.1002/chem.201902766] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Revised: 07/14/2019] [Indexed: 11/09/2022]
Abstract
Density functional theory (DFT) and an advanced ab initio technique based on density matrix renormalization group (DMRG-CASPT2) were employed to investigate a reactive N-bridged high-valent diiron-oxo species involved in H-abstraction reactions. We studied in detail two important doublet states, the ground state with two iron(IV) centers and a mixed valence FeV -FeIV excited state. We found that the latter state is low-lying. Furthermore, its electronic structure and spin density imply that it has significantly higher H-abstraction reactivity than the ground state. This low-lying excited state might be the reason behind the high oxidation reactivity of this diiron-oxo species towards methane.
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Affiliation(s)
- Quan Manh Phung
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven, 3001, Belgium.,Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, 464-8602, Japan
| | - Kristine Pierloot
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven, 3001, Belgium
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18
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Gaggioli CA, Stoneburner SJ, Cramer CJ, Gagliardi L. Beyond Density Functional Theory: The Multiconfigurational Approach To Model Heterogeneous Catalysis. ACS Catal 2019. [DOI: 10.1021/acscatal.9b01775] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Carlo Alberto Gaggioli
- Department of Chemistry, Chemical Theory Center and Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States
| | - Samuel J. Stoneburner
- Department of Chemistry, Chemical Theory Center and Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States
| | - Christopher J. Cramer
- Department of Chemistry, Chemical Theory Center and Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States
| | - Laura Gagliardi
- Department of Chemistry, Chemical Theory Center and Supercomputing Institute, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States
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19
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Phung QM, Martín-Fernández C, Harvey JN, Feldt M. Ab Initio Calculations for Spin-Gaps of Non-Heme Iron Complexes. J Chem Theory Comput 2019; 15:4297-4304. [DOI: 10.1021/acs.jctc.9b00370] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Quan Manh Phung
- Department of Chemistry, KU Leuven, Celestijnenlaan 200f, Box 2404, 3001 Leuven, Belgium
| | | | - Jeremy N. Harvey
- Department of Chemistry, KU Leuven, Celestijnenlaan 200f, Box 2404, 3001 Leuven, Belgium
| | - Milica Feldt
- Department of Chemistry, KU Leuven, Celestijnenlaan 200f, Box 2404, 3001 Leuven, Belgium
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20
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Roemelt M, Pantazis DA. Multireference Approaches to Spin‐State Energetics of Transition Metal Complexes Utilizing the Density Matrix Renormalization Group. ADVANCED THEORY AND SIMULATIONS 2019. [DOI: 10.1002/adts.201800201] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Michael Roemelt
- Lehrstuhl für Theoretische ChemieRuhr‐Universität Bochum 44780 Bochum Germany
- Max‐Planck‐Institut für Kohlenforschung Kaiser‐Wilhelm‐Platz 1 45470 Mülheim an der Ruhr Germany
| | - Dimitrios A. Pantazis
- Max‐Planck‐Institut für Kohlenforschung Kaiser‐Wilhelm‐Platz 1 45470 Mülheim an der Ruhr Germany
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