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Zeng X, Zhang R, Li R, Li R, Cui H, Zhao C, Zhang S, Jin L. Adsorption of rare bases on transition metal doped γ-graphyne nanosheets: a DFT study. Phys Chem Chem Phys 2024; 26:25208-25221. [PMID: 39315582 DOI: 10.1039/d4cp03128h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/25/2024]
Abstract
Detection of rare bases (RBs) is key to understanding biological complexity, rapidly diagnosing genetic diseases and advancing personalized medicine. Electrochemical sensors are one of the most promising methods for RB detection, but their low responsiveness limits their effectiveness. Therefore, enhancing selectivity and sensitivity is necessary. γ-Graphyne (γ-GY) has garnered significant attention due to its sp2 and sp hybrid carbon bonds and layered two-dimensional planar structure, as well as its extensive conjugated system, and sizable triangular hole. In this study, the structural characteristics, electronic properties, and sensing parameters of the adsorption involving RBs with both γ-GY and transition metal (Fe, Co, and Ni)-doped γ-graphyne (TM-GY) nanosheets are investigated using density functional theory calculations to evaluate the potential of nanosheets for sequencing RBs in DNA. The result shows that the adsorption interaction between RBs and γ-GY is weak physical adsorption, making it difficult to distinguish RBs. In contrast, the adsorption of RBs with TM-GY is stronger chemisorption and can be completely separated by translocation time and sensing response. Through translocation time calculations, we demonstrate the high selectivity of Ni-GY for RBs. Furthermore, sensitivity analysis reveals that Fe-GY exhibits excellent responsiveness to RBs. Our work reveals that the TM-GY nanosheets hold promise for detecting RBs compared with the γ-GY, and may provide valuable insights for the design of graphyne-based biosensors and catalysts.
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Affiliation(s)
- Xia Zeng
- Shaanxi Key Laboratory of Catalysis, School of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong 723001, China.
| | - Ruiying Zhang
- Shaanxi Key Laboratory of Catalysis, School of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong 723001, China.
| | - Ruirui Li
- Shaanxi Key Laboratory of Catalysis, School of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong 723001, China.
| | - Ruimei Li
- School of Mathematics & Computer Science, Hanzhong 723001, China
| | - Hong Cui
- School of Mechanical Engineering, Shaanxi University of Technology, Hanzhong 723001, China
| | - Caibin Zhao
- Shaanxi Key Laboratory of Catalysis, School of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong 723001, China.
| | - Shengrui Zhang
- Shaanxi Key Laboratory of Catalysis, School of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong 723001, China.
| | - Lingxia Jin
- Shaanxi Key Laboratory of Catalysis, School of Chemical & Environment Science, Shaanxi University of Technology, Hanzhong 723001, China.
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Nagarajan V, Ramesh R, Chandiramouli R. N-Nitrosamine sensing properties of novel penta-silicane nanosheets-a first-principles outlook. J Mol Model 2023; 29:309. [PMID: 37688608 DOI: 10.1007/s00894-023-05711-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Accepted: 08/29/2023] [Indexed: 09/11/2023]
Abstract
CONTEXT N-Nitrosamine is one of the highly toxic carcinogenic compounds that are found almost in the entire environment. In the present work, novel penta-silicene (penta-Si) and penta-silicane (penta-HSi) are utilised to sense the N-nitrosamine in the air environment. Initially, structural firmness of penta-Si and penta-HSi is confirmed using cohesive energy. Subsequently, the electronic properties of penta-Si and penta-HSi are discussed with the aid of electronic band structure and projected density of states (PDOS) maps. The calculated band gap of penta-Si and penta-HSi is 0.251 eV and 3.117 eV, correspondingly. Mainly, the adsorption property of N-nitrosamine on the penta-Si and penta-HSi is studied based on adsorption energy, Mulliken population analysis along with relative energy gap changes. The computed adsorption energy range is in physisorption (- 0.101 to - 0.619 eV), which recommends that the proposed penta-Si and penta-HSi can be employed as a promising sensor to detect the N-nitrosamine in the air environment. METHODS The structural, electronic and adsorption behaviour of N-nitrosamine on penta-Si and penta-HSi are studied based on the density functional theory (DFT) approach. The hybrid generalized gradient approximation (GGA) with Becke's three-parameter (B3) + Lee-Yang-Parr (LYP) exchange correlation functional is used to optimise the base material. All calculations in the present work are carried out in Quantum-ATK-Atomistic Simulation Software.
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Affiliation(s)
- V Nagarajan
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Tirumalaisamudram, Thanjavur, 613 401, India
| | - R Ramesh
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Tirumalaisamudram, Thanjavur, 613 401, India
| | - R Chandiramouli
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Tirumalaisamudram, Thanjavur, 613 401, India.
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Karimzadeh S, Safaei B, Jen TC. Investigation on electrochemical performance of striped, β12 and χ3 Borophene as anode materials for lithium-ion batteries. J Mol Graph Model 2023; 120:108423. [PMID: 36731208 DOI: 10.1016/j.jmgm.2023.108423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2022] [Revised: 01/23/2023] [Accepted: 01/25/2023] [Indexed: 01/28/2023]
Abstract
By developing next-generation lithium-ion batteries (LIBS), demand for exploring novel anode materials with exclusive electrochemical features and ultra-high capacity is increasing. In the current research, first-principles theory, and density functional theory (DFT) calculations were conducted to extensively investigate and compare the capability of three different borophene nanolayers, including striped, β12, and χ3 borophene, as a novel candidate for anode electrode in LIBs. We first predicted the most preferential Li atom adsorption sites on the three borophene structures. The predicted average formation energies for striped, β12, and χ3 borophene were obtained 3.123, 3.184, and 3.216 eV, respectively. The positive value of formation energy exhibits the sufficient stability of the structures. Moreover, the negative adsorption energy proved that Li atom insertion on all borophene monolayers is thermodynamically favorable. In order to simulate the lithiation process, we gradually increased the concentration of Li atoms. We found that the fully lithiated striped, β12 and χ3 borophenes could provide ultra-high specific capacities of 1700, 1983, and 1859 mAh/g, respectively. Structural analysis proved that the surface area expansion rate of the striped borophene in a fully lithiated state was 1%, which was lower than those of β12 and χ3 borophene with 3.33% and 2.63%, respectively. The analyses of electronic properties confirmed that borophenes were inherently metallic and superior ion conductive agents, even after fully lithiated state. Ion diffusion was studied using Nudged elastic band method and the value of diffusion energy barrier ranged from 0.03 to 0.36 eV which was lower than other promising 2D anode materials. Furthermore, open-circuit voltage results demonstrated that the electronic potential of modeled borophenes was low enough to be in the acceptable range of under 1.2V. All these reports exhibited that borophene nanolayers with excellent specific capacity and superior conductivity were desired candidates for anode materials of next generation LIBs.
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Affiliation(s)
- Sina Karimzadeh
- Department of Mechanical Engineering Science, University of Johannesburg, Gauteng, 2006, South Africa.
| | - Babak Safaei
- Department of Mechanical Engineering Science, University of Johannesburg, Gauteng, 2006, South Africa; Department of Mechanical Engineering, Eastern Mediterranean University, Famagusta, North Cyprus Via Mersin 10, Turkey.
| | - Tien-Chien Jen
- Department of Mechanical Engineering Science, University of Johannesburg, Gauteng, 2006, South Africa.
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Long NT, Tuan TQ, Thuy DNA, Ho QD, Huy HA. Molecular dynamics study of the finite-size effect in 2D nanoribbon silicene. MOLECULAR SIMULATION 2023. [DOI: 10.1080/08927022.2023.2184182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/11/2023]
Affiliation(s)
- Nguyen Truong Long
- Department of Physics, School of Education, Can Tho University, Can Tho, Viet Nam
| | - Truong Quoc Tuan
- Department of Physics, College of Natural Science, Can Tho University, Can Tho, Viet Nam
| | - Do Ngoc Anh Thuy
- Department of Physics, College of Natural Science, Can Tho University, Can Tho, Viet Nam
| | - Quoc Duy Ho
- High-Performance Computing Lab (HPC Lab), Information Technology Center, Thu Dau Mot University, Binh Duong, Viet Nam
| | - Huynh Anh Huy
- Department of Physics, School of Education, Can Tho University, Can Tho, Viet Nam
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Borlido P, Marques MAL, Botti S. Bishop's hat silicene: a planar square silicon bilayer decorated with adatoms. Phys Chem Chem Phys 2021; 23:16942-16947. [PMID: 34338249 DOI: 10.1039/d1cp01316e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We investigate a family of free-standing quasi-two-dimensional silicon structures based on a planar square bilayer with adatom decorations. When attached to the bilayer, these adatoms form local reconstructions which resemble either a bishop's hat or elongated square bipyramids. We systematically constructed members of this family via exhaustive enumeration and then studied them using tight-binding and density-functional theory. We find that this geometry contributes significantly to the stability of the resulting structures, with some squared bilayers energetically more stable than the honeycomb bilayers. The most interesting phases were then characterized in more detail, and they all turned out metallic. Finally, we propose the [100] surface of ZrO2 as the most suitable substrate for the synthesis of these two-dimensional phases.
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Affiliation(s)
- Pedro Borlido
- Institut für Festkörpertheorie und -optik, Friedrich-Schiller-Universität Jena and European Theoretical Spectroscopy Facility, Max-Wien-Platz 1, 07743 Jena, Germany.
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Liu X, Lin S, Gao J, Shi H, Kim SG, Chen Z, Lee H. Enhanced performance of Mo 2P monolayer as lithium-ion battery anode materials by carbon and nitrogen doping: a first principles study. Phys Chem Chem Phys 2021; 23:4030-4038. [PMID: 33554982 DOI: 10.1039/d0cp06428a] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
By means of density functional theory (DFT) computations, we explored the potential of carbon- and nitrogen-doped Mo2P (CMP and NMP) layered materials as the representative of transition metal phosphides (TMPs) for the development of lithium-ion battery (LIB) anode materials, paying special attention to the synergistic effects of the dopants. Both CMP and NMP have exceptional stabilities and excellent electronic conductivity, and a high theoretical maximum storage capacity of ∼ 486 mA h g-1. Li-ion diffusion barriers on the two-dimensional (2D) CMP and NMP surfaces are extremely low (∼0.036 eV), and it is expected that on these 2D layers Li can diffuse 104 times faster than that on MoS2 and graphene at room temperature, and both monolayers have relatively low average open-circuit voltage (0.38 and 0.4 eV). All these exceptional properties make CMP and NMP monolayers as promising candidates for high-performance LIB anode materials, which also demonstrates that simple doping is an effective strategy to enhance the performance of anode materials in rechargeable batteries.
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Affiliation(s)
- Xinghui Liu
- Center for Integrated Nanostructure Physics (CINAP), Institute of Basic Science (IBS), 2066 Seoburo, Jangan-Gu, Suwon 16419, Republic of Korea and Department of Chemistry, Sungkyunkwan University (SKKU), 2066 Seoburo, Jangan-Gu, Suwon 16419, Republic of Korea.
| | - Shiru Lin
- Department of Chemistry, University of Puerto Rico, Rio Piedras Campus, San Juan, USA.
| | - Jian Gao
- State Key Laboratory of Organic-Inorganic Composites, Beijing University of Chemical Technology, Beijing 100029, China
| | - Hu Shi
- School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan, People's Republic of China
| | - Seong-Gon Kim
- Department of Physics and Astronomy, Mississippi State University, Mississippi State, MS 39762, USA
| | - Zhongfang Chen
- Department of Chemistry, University of Puerto Rico, Rio Piedras Campus, San Juan, USA.
| | - Hyoyoung Lee
- Center for Integrated Nanostructure Physics (CINAP), Institute of Basic Science (IBS), 2066 Seoburo, Jangan-Gu, Suwon 16419, Republic of Korea and Department of Chemistry, Sungkyunkwan University (SKKU), 2066 Seoburo, Jangan-Gu, Suwon 16419, Republic of Korea. and Department of Biophysics, Sungkyunkwan University (SKKU), 2066 Seoburo, Jangan-Gu, Suwon 16419, Republic of Korea
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Galashev AY, Ivanichkina KA, Katin KP, Maslov MM. Computer Test of a Modified Silicene/Graphite Anode for Lithium-Ion Batteries. ACS OMEGA 2020; 5:13207-13218. [PMID: 32548507 PMCID: PMC7288579 DOI: 10.1021/acsomega.0c01240] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Accepted: 05/15/2020] [Indexed: 05/14/2023]
Abstract
Despite the considerable efforts made to use silicon anodes and composites based on them in lithium-ion batteries, it is still not possible to overcome the difficulties associated with low conductivity, a decrease in the bulk energy density, and side reactions. In the present work, a new design of an electrochemical cell, whose anode is made in the form of silicene on a graphite substrate, is presented. The whole system was subjected to transmutation neutron doping. The molecular dynamics method was used to study the intercalation and deintercalation of lithium in a phosphorus-doped silicene channel. The maximum uniform filling of the channel with lithium is achieved at 3% and 6% P-doping of silicene. The high mobility of Li atoms in the channel creates the prerequisites for the fast charging of the battery. The method of statistical geometry revealed the irregular nature of the packing of lithium atoms in the channel. Stresses in the channel walls arising during its maximum filling with lithium are significantly inferior to the tensile strength even in the presence of polyvacancies in doped silicene. The proposed design of the electrochemical cell is safe to operate.
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Affiliation(s)
- Alexander Y. Galashev
- Institute
of High-Temperature Electrochemistry of the Ural Branch of the Russian
Academy of Sciences, Sofia Kovalevska Str. 22, Yekateirnburg 620990, Russia
- Ural
Federal University Named after the First President of Russia B.N.
Yeltsin, Mira Str. 19, Yekaterinburg 620002, Russia
| | - Ksenia A. Ivanichkina
- Institute
of High-Temperature Electrochemistry of the Ural Branch of the Russian
Academy of Sciences, Sofia Kovalevska Str. 22, Yekateirnburg 620990, Russia
| | - Konstantin P. Katin
- National
Research Nuclear University “MEPhI”, Kashirskoe Shosse 31, Moscow 115409, Russia
- Research
Institute for the Development of Scientific and Educational Potential
of Youth, Aviatorov Str.
14/55, Moscow 119620, Russia
| | - Mikhail M. Maslov
- National
Research Nuclear University “MEPhI”, Kashirskoe Shosse 31, Moscow 115409, Russia
- Research
Institute for the Development of Scientific and Educational Potential
of Youth, Aviatorov Str.
14/55, Moscow 119620, Russia
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Galashev AY, Ivanichkina KA. Computational investigation of a promising Si-Cu anode material. Phys Chem Chem Phys 2019; 21:12310-12320. [PMID: 31139778 DOI: 10.1039/c9cp01571j] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The lack of suitable anode materials is a limiting factor in the creation of a new generation of lithium-ion batteries. We use the molecular dynamics method to explore the processes of intercalation and deintercalation of lithium in the anode element, represented by two sheets of silicene, on a copper substrate. It is shown that the presence of vacancy-type defects in silicene increases the electrode capacitance, which becomes especially significant with bivacancies. However, the enlargement of defect sizes reduces the strength of the silicene channel during cycling and in the presence of hexavacancies it suffers a strong deformation and becomes impassable for Li+ ions during intercalation. The presence of a copper substrate greatly changes the electronic properties of silicene. The calculated DOS spectrum shows that silicon on a copper substrate acquires metallic properties. To analyze the structure we used the statistical geometry method. Lithium atoms in the channel are predominantly irregularly packed. However, part of the Li atoms are located above the hexagonal Si cells. The average stresses in silicene, calculated with limiting filling of the channel with lithium, are usually small. However, in the case of silicene with monovacancies, the tensile stress reaches 12.5% of the ultimate tensile stress. Evaluation of the dynamic stress observed in silicene during cycling shows that its value is less than 5% of the ultimate tensile stress.
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Affiliation(s)
- Alexander Y Galashev
- Institute of High-Temperature Electrochemistry, Ural Branch, Russian Academy of Sciences, Sofia Kovalevskaya Str. 22, Yekaterinburg 620990, Russia. and Ural Federal University named after the first President of Russia, B. N. Yeltsin Mira Str., 19, Yekaterinburg 620002, Russia
| | - Ksenia A Ivanichkina
- Institute of High-Temperature Electrochemistry, Ural Branch, Russian Academy of Sciences, Sofia Kovalevskaya Str. 22, Yekaterinburg 620990, Russia.
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