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Blovský T, Šindelka K, Limpouchová Z, Procházka K. Changes in Ion Concentrations upon the Binding of Short Polyelectrolytes on Phospholipid Bilayers: Computer Study Addressing Interesting Physiological Consequences. Polymers (Basel) 2022; 14:polym14173634. [PMID: 36080710 PMCID: PMC9459791 DOI: 10.3390/polym14173634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 08/21/2022] [Accepted: 08/26/2022] [Indexed: 11/16/2022] Open
Abstract
This computer study was inspired by the experimental observation of Y. Qian et al. published in ACS Applied Materials and Interfaces, 2018 that the short positively charged β-peptide chains and their oligomeric analogues efficiently suppress severe medical problems caused by antimicrobial drug-resistant bacteria despite them not penetrating the bacterial membrane. Our coarse-grained molecular dynamics (dissipative particle dynamics) simulations confirm the tentative explanation of the authors of the experimental study that the potent antimicrobial activity is a result of the entropically driven release of divalent ions (mainly magnesium ions essential for the proper biological function of bacteria) into bulk solution upon the electrostatic binding of β-peptides to the bacterial membrane. The study shows that in solutions containing cations Na+, Ca2+ and Mg2+, and anions Cl−, the divalent cations preferentially concentrate close to the membrane and neutralize the negative charge. Upon the addition of positively charged oligomer chains (models of β-peptides and their analogues), the oligomers electrostatically bind to the membrane replacing divalent ions, which are released into bulk solvent. Our simulations indicate that the entropy of small ions (which controls the behavior of synthetic polyelectrolyte solutions) plays an important role in this and also in other similar biologically important systems.
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Affiliation(s)
- Tomáš Blovský
- The Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030, 128 40 Prague 2, Czech Republic
| | - Karel Šindelka
- Department of Molecular and Mesoscopic Modelling, Institute of Chemical Process Fundamentals of the Czech Academy of Sciences, v.v.i., Rozvojová 135/1, Suchdol, 165 02 Prague 6, Czech Republic
| | - Zuzana Limpouchová
- The Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030, 128 40 Prague 2, Czech Republic
| | - Karel Procházka
- The Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030, 128 40 Prague 2, Czech Republic
- Correspondence:
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2
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Javan Nikkhah S, Cazade PA, McManus JJ, Thompson D. Design Rules for Antibody Delivery by Self-Assembled Block-Copolyelectrolyte Nanocapsules. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c00118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Sousa Javan Nikkhah
- Department of Physics, Bernal Institute, University of Limerick, V94 T9PX Limerick, Ireland
| | - Pierre A. Cazade
- Department of Physics, Bernal Institute, University of Limerick, V94 T9PX Limerick, Ireland
| | - Jennifer J. McManus
- H. H. Wills Physics Laboratory, University of Bristol, Bristol BS8 1TL, United Kingdom
| | - Damien Thompson
- Department of Physics, Bernal Institute, University of Limerick, V94 T9PX Limerick, Ireland
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3
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Procházka K, Limpouchová Z, Štěpánek M, Šindelka K, Lísal M. DPD Modelling of the Self- and Co-Assembly of Polymers and Polyelectrolytes in Aqueous Media: Impact on Polymer Science. Polymers (Basel) 2022; 14:polym14030404. [PMID: 35160394 PMCID: PMC8838752 DOI: 10.3390/polym14030404] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 01/17/2022] [Accepted: 01/18/2022] [Indexed: 02/04/2023] Open
Abstract
This review article is addressed to a broad community of polymer scientists. We outline and analyse the fundamentals of the dissipative particle dynamics (DPD) simulation method from the point of view of polymer physics and review the articles on polymer systems published in approximately the last two decades, focusing on their impact on macromolecular science. Special attention is devoted to polymer and polyelectrolyte self- and co-assembly and self-organisation and to the problems connected with the implementation of explicit electrostatics in DPD numerical machinery. Critical analysis of the results of a number of successful DPD studies of complex polymer systems published recently documents the importance and suitability of this coarse-grained method for studying polymer systems.
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Affiliation(s)
- Karel Procházka
- Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Hlavova 8, 128 43 Prague, Czech Republic; (Z.L.); (M.Š.)
- Correspondence:
| | - Zuzana Limpouchová
- Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Hlavova 8, 128 43 Prague, Czech Republic; (Z.L.); (M.Š.)
| | - Miroslav Štěpánek
- Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Hlavova 8, 128 43 Prague, Czech Republic; (Z.L.); (M.Š.)
| | - Karel Šindelka
- Department of Molecular and Mesoscopic Modelling, Institute of Chemical Process Fundamentals, Czech Academy of Sciences, Rozvojová 135, 165 02 Prague, Czech Republic; (K.Š.); (M.L.)
| | - Martin Lísal
- Department of Molecular and Mesoscopic Modelling, Institute of Chemical Process Fundamentals, Czech Academy of Sciences, Rozvojová 135, 165 02 Prague, Czech Republic; (K.Š.); (M.L.)
- Department of Physics, Faculty of Science, Jan Evangelista Purkyně University in Ústí nad Labem, Pasteurova 3632, 400 96 Ústí n. Labem, Czech Republic
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Chiangraeng N, Keyen U, Yoshida N, Nimmanpipug P. Temperature-responsive morphology formation of a PS- b-PI copolymer: a dissipative particle dynamics simulation study. SOFT MATTER 2021; 17:6248-6258. [PMID: 34124726 DOI: 10.1039/d1sm00152c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Self-assembly responsiveness to stimuli of polystyrene-block-polyisoprene (PS-b-PI) diblock copolymer materials is explored by means of classical molecular dynamics (MD) and dissipative particle dynamics (DPD) simulations. A concerted relationship between the parameters achieved from atomistic and DPD simulations is obtained for this molecular recognition as clearly pronounced in a phase transition. Effects of temperature, model size and composition on the morphological formation were systematically investigated for the diblock copolymeric system. Structural changes resulting in the evolution of rheology as well as an equilibrium ordered structure were analyzed in terms of order parameters and radial distribution functions. From our models, various morphologies were observed including discrete clusters (sphere-liked morphology), connected clusters (gyroid-liked morphology), hexagonally packed cylinders (HEX), connected cylinders, irregular cylinders, perfect lamellae, perforated lamellae and defected lamellae. Based on this finding, a bottom-up multi-scale simulation of the PS-b-PI diblock copolymer provides a link between equilibrium copolymeric morphologies and the crucial parameters.
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Affiliation(s)
- Natthiti Chiangraeng
- Computational Simulation Modeling Laboratory, Department of Chemistry and Center of Excellence in Materials Science and Technology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand. and Doctor of Philosophy Program in Chemistry, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Ukrit Keyen
- Computational Simulation Modeling Laboratory, Department of Chemistry and Center of Excellence in Materials Science and Technology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand.
| | - Norio Yoshida
- Department of Chemistry, Graduate School of Science, Kyushu University, Fukuoka 812-8582, Japan
| | - Piyarat Nimmanpipug
- Computational Simulation Modeling Laboratory, Department of Chemistry and Center of Excellence in Materials Science and Technology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand.
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Del Sorbo GR, Cristiglio V, Clemens D, Hoffmann I, Schneck E. Influence of the Surfactant Tail Length on the Viscosity of Oppositely Charged Polyelectrolyte/Surfactant Complexes. Macromolecules 2021. [DOI: 10.1021/acs.macromol.0c02728] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Giuseppe Rosario Del Sorbo
- Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, D-14476 Potsdam, Germany
- Institut Max von Laue-Paul Langevin (ILL), 71 avenue des Martyrs, CS 20156, F-38042 Grenoble Cedex 9, France
| | - Viviana Cristiglio
- Institut Max von Laue-Paul Langevin (ILL), 71 avenue des Martyrs, CS 20156, F-38042 Grenoble Cedex 9, France
| | - Daniel Clemens
- Helmholtz Zentrum Berlin, Hahn-Meitner Platz 1, D-14109 Berlin, Germany
| | - Ingo Hoffmann
- Institut Max von Laue-Paul Langevin (ILL), 71 avenue des Martyrs, CS 20156, F-38042 Grenoble Cedex 9, France
| | - Emanuel Schneck
- Department of Physics, Technische Universität Darmstadt, Hochschulstraße 8, D-64289 Darmstadt, Germany
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Šindelka K, Limpouchová Z, Procházka K. Solubilization of Charged Porphyrins in Interpolyelectrolyte Complexes: A Computer Study. Polymers (Basel) 2021; 13:502. [PMID: 33562022 PMCID: PMC7915837 DOI: 10.3390/polym13040502] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 01/29/2021] [Accepted: 02/03/2021] [Indexed: 11/21/2022] Open
Abstract
Using coarse-grained dissipative particle dynamics (DPD) with explicit electrostatics, we performed (i) an extensive series of simulations of the electrostatic co-assembly of asymmetric oppositely charged copolymers composed of one (either positively or negatively charged) polyelectrolyte (PE) block A and one water-soluble block B and (ii) studied the solubilization of positively charged porphyrin derivatives (P+) in the interpolyelectrolyte complex (IPEC) cores of co-assembled nanoparticles. We studied the stoichiometric mixtures of 137 A10+B25 and 137 A10-B25 chains with moderately hydrophobic A blocks (DPD interaction parameter aAS=35) and hydrophilic B blocks (aBS=25) with 10 to 120 P+ added (aPS=39). The P+ interactions with other components were set to match literature information on their limited solubility and aggregation behavior. The study shows that the moderately soluble P+ molecules easily solubilize in IPEC cores, where they partly replace PE+ and electrostatically crosslink PE- blocks. As the large P+ rings are apt to aggregate, P+ molecules aggregate in IPEC cores. The aggregation, which starts at very low loadings, is promoted by increasing the number of P+ in the mixture. The positively charged copolymers repelled from the central part of IPEC core partially concentrate at the core-shell interface and partially escape into bulk solvent depending on the amount of P+ in the mixture and on their association number, AS. If AS is lower than the ensemble average ⟨AS⟩n, the copolymer chains released from IPEC preferentially concentrate at the core-shell interface, thus increasing AS, which approaches ⟨AS⟩n. If AS>⟨AS⟩n, they escape into the bulk solvent.
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Affiliation(s)
- Karel Šindelka
- Department of Molecular and Mesoscopic Modelling, Czech Academy of Sciences, Institute of Chemical Process Fundamentals, Rozvojová 1, 165 02 Prague, Czech Republic;
| | - Zuzana Limpouchová
- Department of Physical Chemistry, Faculty of Science, Charles University, Hlavova 8, 128 00 Prague, Czech Republic;
| | - Karel Procházka
- Department of Physical Chemistry, Faculty of Science, Charles University, Hlavova 8, 128 00 Prague, Czech Republic;
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Šindelka K, Lísal M. Interplay between surfactant self-assembly and adsorption at hydrophobic surfaces: insights from dissipative particle dynamics. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1857863] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Karel Šindelka
- Department of Molecular and Mesoscopic Modelling, The Czech Academy of Sciences, Institute of Chemical Process Fundamentals, Prague, Czech Republic
| | - Martin Lísal
- Department of Molecular and Mesoscopic Modelling, The Czech Academy of Sciences, Institute of Chemical Process Fundamentals, Prague, Czech Republic
- Department of Physics, Faculty of Science, Jan Evangelista Purkyně University in Ústí nad Labem, Ústí nad Labem, Czech Republic
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Raya RK, Štěpánek M, Limpouchová Z, Procházka K, Svoboda M, Lísal M, Pavlova E, Skandalis A, Pispas S. Onion Micelles with an Interpolyelectrolyte Complex Middle Layer: Experimental Motivation and Computer Study. Macromolecules 2020. [DOI: 10.1021/acs.macromol.0c00560] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Rahul Kumar Raya
- Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030, 12840 Prague 2, Czech Republic
| | - Miroslav Štěpánek
- Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030, 12840 Prague 2, Czech Republic
| | - Zuzana Limpouchová
- Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030, 12840 Prague 2, Czech Republic
| | - Karel Procházka
- Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030, 12840 Prague 2, Czech Republic
| | - Martin Svoboda
- Department of Physics, Faculty of Science, J. E. Purkinje University, České mládeže 8, 400 96 Ústí n. Lab., Czech Republic
- Department of Molecular and Mesoscopic Modelling, Institute of Chemical Process Fundamentals of the CAS, Rozvojová 135/1, 165 02 Prague 6, Suchdol, Czech Republic
| | - Martin Lísal
- Department of Physics, Faculty of Science, J. E. Purkinje University, České mládeže 8, 400 96 Ústí n. Lab., Czech Republic
- Department of Molecular and Mesoscopic Modelling, Institute of Chemical Process Fundamentals of the CAS, Rozvojová 135/1, 165 02 Prague 6, Suchdol, Czech Republic
| | - Ewa Pavlova
- Department of Polymer Morphology, Institute of Macromolecular Chemistry of the CAS, Heyrovský Square 2, 160 00 Prague 6, Czech Republic
| | - Athanasios Skandalis
- Theoretical & Physical Chemistry Institute, National Hellenic Research Foundation, 48 Vassileos Constantinou Avenue, 11635 Athens, Greece
| | - Stergios Pispas
- Theoretical & Physical Chemistry Institute, National Hellenic Research Foundation, 48 Vassileos Constantinou Avenue, 11635 Athens, Greece
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Bos I, Sprakel J. Langevin Dynamics Simulations of the Exchange of Complex Coacervate Core Micelles: The Role of Nonelectrostatic Attraction and Polyelectrolyte Length. Macromolecules 2019; 52:8923-8931. [PMID: 31787780 PMCID: PMC6881903 DOI: 10.1021/acs.macromol.9b01442] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Revised: 10/04/2019] [Indexed: 12/12/2022]
Abstract
Complex coacervate core micelles (C3Ms) are promising encapsulators for a wide variety of (bio)molecules. To protect and stabilize their cargo, it is essential to control their exchange dynamics. Yet, to date, little is known about the kinetic stability of C3Ms and the dynamic equilibrium of molecular building blocks with micellar species. Here we study the C3M exchange during the initial micellization by using Langevin dynamics simulations. In this way, we show that charge neutral heterocomplexes consisting of multiple building blocks are the primary mediator for exchange. In addition, we show that the kinetic stability of the C3Ms can be tuned not only by the electrostatic interaction but also by the nonelectrostatic attraction between the polyelectrolytes, the polyelectrolyte length ratio, and the overall polyelectrolyte length. These insights offer new rational design guides to aid the development of new C3M encapsulation strategies.
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Affiliation(s)
- Inge Bos
- Physical Chemistry and Soft
Matter, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands
| | - Joris Sprakel
- Physical Chemistry and Soft
Matter, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands
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