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Yang ZY, Jiang WY, Ran SY. Reductant-dependent DNA-templated silver nanoparticle formation kinetics. Phys Chem Chem Phys 2023; 25:23197-23206. [PMID: 37605826 DOI: 10.1039/d3cp02623j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/23/2023]
Abstract
DNA molecules have been demonstrated to be good templates for producing silver nanoparticles (AgNPs), with the advantages of well-controlled sizes, shapes, and properties. Revealing the formation kinetics of DNA-templated AgNPs is crucial for their efficient synthesis. Herein, using magnetic tweezers, we studied the reduction kinetics of the Ag+-DNA structure and the subsequent nucleation kinetics by adding NaBH4, L-ascorbic acid, and sodium citrate solutions. At [Ag+] = 0.01 mM, the addition of NaBH4 solution with the same concentration resulted in the restoration of DNA. In contrast, by increasing the [NaBH4]/[Ag+] ratio (r) to 10 and 100, the DNA extension initially decreased rapidly and then increased, indicating nucleation-dissolution kinetics. With AgNO3 solutions of higher concentrations (0.1 mM and 1 mM), direct particle nucleation and growth kinetics were observed by adding a tenfold (r = 10) or a hundredfold (r = 100) amount of NaBH4, which were evidenced by a significant reduction in DNA extension. The reductant dependence of the kinetics was further investigated. Addition of L-ascorbic acid to the DNA-Ag+ solution yielded an increase-decrease kinetics that was different from that caused by NaBH4, suggesting that nucleation was not initially favored due to the lack of sufficient Ag atoms; while sodium citrate showed a weak nucleation-promoting ability to form AgNPs. We discussed the findings within the framework of classical nucleation theory, in which the supersaturation of the Ag atom is strongly influenced by multiple factors (including the reducing ability of the reductant), resulting in different kinetics.
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Affiliation(s)
- Zi-Yang Yang
- Department of Physics, Wenzhou University, Wenzhou 325035, China.
| | - Wen-Yan Jiang
- Department of Physics, Wenzhou University, Wenzhou 325035, China.
| | - Shi-Yong Ran
- Department of Physics, Wenzhou University, Wenzhou 325035, China.
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Peng H, Guo D, Shan W, Liu Z, Wang H, Ma L, Xu B, Guo X. Identification of the AccCDK1 gene in Apis cerana cerana and its relationship with the oxidative stress response. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2022; 182:105048. [PMID: 35249658 DOI: 10.1016/j.pestbp.2022.105048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2021] [Revised: 12/16/2021] [Accepted: 01/20/2022] [Indexed: 06/14/2023]
Abstract
The cyclin-dependent kinase (CDK) protein family plays an important role in regulating life functions, such as the cell cycle and metabolism. This study reports the first cloning and functional analysis of A. cerana cerana CDK1 (AccCDK1). The distribution profile of AccCDK1 in different developmental periods and different tissues was determined. The experimental results showed that the distribution of AccCDK1 was tissue-specific. AccCDK1 distribution at the transcriptional and translational levels was affected by stress conditions induced by H2O2, UV, HgCl2, CdCl2, extreme temperatures (4 °C, 44 °C) and pesticides (avermectin, lambda-cyhalothrin, haloxyfop-R-methyl, and glyphosate), which resulted in changes in the expression levels. These results suggest that AccCDK1 may have an important part to play in honey bee resistance to stress. The expression of a recombinant AccCDK1 protein in vitro enhanced the antistress capacities of E. coli and yeast, which suggests that AccCDK1 is related to the stress response. When AccCDK1 was silenced, the expression of some antioxidant genes was downregulated, and the enzymatic potencies of superoxide dismutase (SOD), peroxidase (POD) and catalase (CAT) were reduced, which suggests that AccCDK1 takes part in the body's resistance to oxidative stress upon external stimulation by influencing relevant antioxidants. Notably, the survival rate of A. cerana cerana under high-temperature-induced stress decreased after AccCDK1 silencing, which verifies our results. In conclusion, we found that AccCDK1 played an indispensable function in resisting oxidative stress and maintaining normal cellular functions.
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Affiliation(s)
- Hongyan Peng
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China
| | - Dezheng Guo
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China
| | - Wenlu Shan
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China
| | - Zhenguo Liu
- College of Animal Science and Technology, Shandong Agricultural University, Taian, Shandong 271018, PR China
| | - Hongfang Wang
- College of Animal Science and Technology, Shandong Agricultural University, Taian, Shandong 271018, PR China
| | - Lanting Ma
- College of Animal Science and Technology, Shandong Agricultural University, Taian, Shandong 271018, PR China
| | - Baohua Xu
- College of Animal Science and Technology, Shandong Agricultural University, Taian, Shandong 271018, PR China.
| | - Xingqi Guo
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China.
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Liu YF, Ran SY. Divalent metal ions and intermolecular interactions facilitate DNA network formation. Colloids Surf B Biointerfaces 2020; 194:111117. [PMID: 32512310 DOI: 10.1016/j.colsurfb.2020.111117] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Revised: 04/30/2020] [Accepted: 05/06/2020] [Indexed: 02/08/2023]
Abstract
The interactions between divalent metal ions and DNA are crucial for basic life processes. These interactions are also important in advanced technological products such as DNA-based ion sensors. Current polyelectrolyte theories cannot describe these interactions well and do not consider the corresponding dynamics. In this study, we report the single-molecule dynamics of the binding of divalent metal ions to a single DNA molecule and the morphology characterization of the complex. We found that most of the divalent metal ions (Mn2+, Zn2+, Co2+, Ni2+, and Cd2+), except Mg2+ and Ca2+, could cause monomolecular DNA condensation. For transition metal ions, different ionic strengths were required to induce the compaction, and different shortening speeds were displayed in the dynamics, indicating ionic specificity. Atomic force microscopy revealed that the morphologies of the metal ion-DNA complexes were affected by the ionic strength of the metal ion, DNA chain length, and DNA concentration. At low metal ion concentration, DNA tended to adopt a random coil conformation. Increasing the ionic strength led to network-like condensed structures, suggesting that divalent metal ions can induce attraction between DNA molecules. Furthermore, higher DNA concentration and longer chain length enhanced intermolecular interactions and consequently resulted in network structures with a higher degree of interconnectivity.
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Affiliation(s)
- Yin-Feng Liu
- Department of Physics, Wenzhou University, Wenzhou 325035, China
| | - Shi-Yong Ran
- Department of Physics, Wenzhou University, Wenzhou 325035, China.
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Kumaravel S, Kumar MP, Thiruvengetam P, Bandla N, Sankar SS, Ravichandran S, Kundu S. Intervening Bismuth Tungstate with DNA Chain Assemblies: A Perception toward Feedstock Conversion via Photoelectrocatalytic Water Splitting. Inorg Chem 2020; 59:14501-14512. [PMID: 32924460 DOI: 10.1021/acs.inorgchem.0c02296] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
An advanced approach with DNA-mediated bismuth tungstate (Bi2WO6) one-dimensional (1-D) nanochain assemblies for hydrogen production with 5-fold enhanced photoelectrochemical (PEC) water splitting reaction is presented. The creation of new surface states upon DNA modification mediates the electron transfer in a facile manner for a better PEC process. The UV-Vis-DRS analysis results a red shift in the optical absorption phenomenon with the interference of DNA modification on Bi2WO6, and, thus, the band gap was tuned from 3.05 eV to 2.71 eV. The applied bias photon-to-current efficiency (ABPE) was calculated and shows a maximum for the Bi2WO6@DNA-2 (25.22 × 10-4%), compared to pristine Bi2WO6 (7.76 × 10-4%). Furthermore, the idea of practical utility of produced hydrogen from PEC is established for the first time with photocatalytic feedstock conversion to platform chemicals using cinnamaldehyde, 2-hydroxy-1-phenylethanone, and 2-(3-methoxyphenoxy)-1-phenylethanone in large scale by hydrogenation and/or hydrogenolysis reactions under eco-friendly green conditions with external hydrogen pressure in an aqueous mixture. Also, the recyclability experiment delivered good yields, which further confirm the robustness of the developed catalyst.
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Affiliation(s)
- Sangeetha Kumaravel
- Materials Electrochemistry Division (MED), CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi-630003, Tamil Nadu, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad-201002, India
| | - M Praveen Kumar
- Electro Inorganic Division, CSIR-Central Electrochemical Research Institute (CSIR-CECRI), Karaikudi-630003, Tamil Nadu, India
| | | | - Nischala Bandla
- Materials Electrochemistry Division (MED), CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi-630003, Tamil Nadu, India
| | - Selvasundarasekar Sam Sankar
- Materials Electrochemistry Division (MED), CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi-630003, Tamil Nadu, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad-201002, India
| | - Subbiah Ravichandran
- Electro Inorganic Division, CSIR-Central Electrochemical Research Institute (CSIR-CECRI), Karaikudi-630003, Tamil Nadu, India
| | - Subrata Kundu
- Materials Electrochemistry Division (MED), CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi-630003, Tamil Nadu, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad-201002, India
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Charge transfer complex based real-time colorimetric chemosensor for rapid recognition of dinitrobenzene and discriminative detection of Fe2+ ions in aqueous media and human hemoglobin. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2020.112402] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Fu H, Zhang C, Qiang XW, Yang YJ, Dai L, Tan ZJ, Zhang XH. Opposite Effects of High-Valent Cations on the Elasticities of DNA and RNA Duplexes Revealed by Magnetic Tweezers. PHYSICAL REVIEW LETTERS 2020; 124:058101. [PMID: 32083903 DOI: 10.1103/physrevlett.124.058101] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Accepted: 01/16/2020] [Indexed: 06/10/2023]
Abstract
We report that trivalent cobalt hexammine cations decrease the persistence length, stretching modulus, helical density, and size of plectonemes formed under torque of DNA but increase those of RNA. Divalent magnesium cations, however, decrease the persistence lengths, contour lengths, and sizes of plectonemes while increasing the helical densities of both DNA and RNA. The experimental results are explained by different binding modes of the cations on DNA and RNA in our all-atom molecular dynamics simulations. The significant variations of the helical densities and structures of DNA and RNA duplexes induced by high-valent cations may affect interactions of the duplexes with proteins.
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Affiliation(s)
- Hang Fu
- College of Life Sciences, the Institute for Advanced Studies, State Key Laboratory of Virology, Hubei Key Laboratory of Cell Homeostasis, Wuhan University, Wuhan 430072, China
| | - Chen Zhang
- College of Life Sciences, the Institute for Advanced Studies, State Key Laboratory of Virology, Hubei Key Laboratory of Cell Homeostasis, Wuhan University, Wuhan 430072, China
| | - Xiao-Wei Qiang
- Center for Theoretical Physics and Key Laboratory of Artificial Micro & Nano-structures of Ministry of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China
| | - Ya-Jun Yang
- College of Life Sciences, the Institute for Advanced Studies, State Key Laboratory of Virology, Hubei Key Laboratory of Cell Homeostasis, Wuhan University, Wuhan 430072, China
| | - Liang Dai
- Department of Physics, City University of Hong Kong, Hong Kong 999077, China
| | - Zhi-Jie Tan
- Center for Theoretical Physics and Key Laboratory of Artificial Micro & Nano-structures of Ministry of Education, School of Physics and Technology, Wuhan University, Wuhan 430072, China
| | - Xing-Hua Zhang
- College of Life Sciences, the Institute for Advanced Studies, State Key Laboratory of Virology, Hubei Key Laboratory of Cell Homeostasis, Wuhan University, Wuhan 430072, China
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