Multiscale QM/MM modelling of catalytic systems with ChemShell

Hybrid quantum mechanical/molecular mechanical (QM/MM) methods are a powerful computational tool for the investigation of all forms of catalysis, as they allow for an accurate description of reactions occurring at catalytic sites in the context of a complicated electrostatic environment. The scriptable computational chemistry environment ChemShell is a leading software package for QM/MM calculations, providing a flexible, high performance framework for modelling both biomolecular and materials catalysis. We present an overview of recent applications of ChemShell to problems in catalysis and review new functionality introduced into the redeveloped Python-based version of ChemShell to support catalytic modelling. These include a fully guided workflow for biomolecular QM/MM modelling, starting from an experimental structure, a periodic QM/MM embedding scheme to support modelling of metallic materials, and a comprehensive set of tutorials for biomolecular and materials modelling.

Catalytic mechanism for the isomerization of glucose into fructose over an aluminium-MCM-41 framework

Al-Containing MCM-41 catalysts exhibit good catalytic activity toward glucose-to-fructose isomerization.

Theoretical study on molecular mechanism of aerobic oxidation of 5-hydroxymethylfurfural to 2,5-diformyfuran catalyzed by VO2+ with counterpart anion in N,N-dimethylacetamide solution

Vanadium-containing catalysts exhibit good catalytic activity toward the aerobic oxidation of 5-hydroxymethylfurfural (HMF) to 2,5-diformyfuran (DFF). The aerobic oxidation mechanism of HMF to DFF catalyzed by VO₂⁺ with counterpart anion in N,N-dimethylacetamide (DMA) solution have been theoretically investigated. In DMA solution, the stable VO₂⁺-containing complex is the four-coordinated [V(O)₂(DMA)₂]⁺ species. For the gross reaction of 2HMF + O₂ → 2DFF + 2H₂O, there are three main reaction stages, i.e., the oxidation of the first HMF to DFF with the reduction of [V(O)₂(DMA)₂]⁺ to [V(OH)₂(DMA)]⁺, the aerobic oxidation of [V(OH)₂(DMA)]⁺ to the peroxide [V(O)₃(DMA)]⁺, and the oxidation of the second HMF to DFF with the reduction of [V(O)₃(DMA)]⁺ to [V(O)₂(DMA)₂]⁺. The rate-determining reaction step is associated with the C–H bond cleavage of –CH₂ group of the first HMF molecule. The peroxide [V(O)₃(DMA)]⁺ species exhibits better oxidative activity than the initial [V(O)₂(DMA)₂]⁺ species, which originates from its narrower HOMO–LUMO gap. The counteranion Cl⁻ exerts promotive effect on the aerobic oxidation of HMF to DFF catalyzed by [V(O)₂(DMA)₂]⁺ species.

The rate-determining reaction step is associated with the C–H bond cleavage of –CH₂ group of the first HMF molecule oxidized by [V(O)₂(DMA)₂]⁺ species, while counteranion Cl⁻ exhibits catalytically promotive effect.

Selective Electrocatalytic Oxidation of Biomass-Derived 5-Hydroxymethylfurfural to 2,5-Diformylfuran: from Mechanistic Investigations to Catalyst Recovery

The catalytic transformation of bio-derived compounds, specifically 5-hydroxymethylfurfural (HMF), into value-added chemicals may provide sustainable alternatives to crude oil and natural gas-based products. HMF can be obtained from fructose and successfully converted to 2,5-diformylfuran (DFF) by an environmentally friendly organic electrosynthesis performed in an ElectraSyn reactor, using cost-effective and sustainable graphite (anode) and stainless-steel (cathode) electrodes in an undivided cell, eliminating the need for conventional precious metal electrodes. In this work, the electrocatalysis of HMF is performed by using green solvents such as acetonitrile, γ-valerolactone, as well as PolarClean, which is used in electrocatalysis for the first time. The reaction parameters and the synergistic effects of the TEMPO catalyst and 2,6-lutidine base are explored both experimentally and through computation modeling. The molecular design and synthesis of a size-enlarged C₃ -symmetric tris-TEMPO catalyst are also performed to facilitate a sustainable reaction work-up through nanofiltration. The obtained performance is then compared with those obtained by heterogeneous TEMPO alternatives recovered by using an external magnetic field and microfiltration. Results show that this new method of electrocatalytic oxidation of HMF to DFF can be achieved with excellent selectivity, good yield, and excellent catalyst recovery.

Catalytic mechanisms of oxygen-containing groups over vanadium active sites in an Al-MCM-41 framework for production of 2,5-diformylfuran from 5-hydroxymethylfurfural

In the V-doped Al-MCM-41 framework, the [V-1] active site with a hydroxyl group displays better catalytic activity than the [V-0] active site without a hydroxyl group toward the oxidation of 5-hydroxymethylfurfural to 2,5-diformylfuran.

One-Pot Synthesis of 2,5-Diformylfuran from Fructose by Bifunctional Polyaniline-Supported Heteropolyacid Hybrid Catalysts

We report the preparation of bifunctional hybrid catalysts by supporting H3PMo12O40 (PMo12) heteropolyacid (HPA) on polyaniline (PAN) or formyl-functionalized PAN (F-PAN) for the “one-pot” and “one-step” synthesis of 2,5-diformylfuran (DFF) from fructose via 5-hydroxymethylfurfural (HMF) intermediate. We show that the PMo12 HPA is the main active species for both fructose dehydration and HMF oxidation owing to its Brønsted acidic and redox characters. However, the anchoring of PMo12 on PAN reduces the Brønsted acidity by acid–base interaction between protons in HPA and quinoid diimine structure in PAN, thereby reducing the dehydration performance. We demonstrate that the catalytic dehydration performance of the hybrid catalyst could be strengthened by grafting formyl groups on PAN before HPA anchoring. The highest DFF yield of 76.7% is obtained by conducting the “one-pot” reaction over the 40-PMo12/F3-PAN catalyst at 413 K for 7 h in air, wherein the side-reactions of fructose or HMF degradation and HMF rehydration have been significantly reduced. This hybrid catalyst is reusable without significant activity loss, highlighting the designing of stable inorganic–organic hybrid catalysts for producing valuable hexose-derived platform chemicals.