pH and generation dependent morphologies of PAMAM dendrimers on a graphene substrate

Poly(amidoamine) dendrimer immunosensor for ultrasensitive gravimetric and electrochemical detection of matrix metalloproteinase-9

Monitoring the level of matrix metalloproteinase-9 (MMP-9) and inhibiting its expression is important for the diagnosis and treatment of various diseases. However, the analysis of MMP-9 is challenging owing to its very low content in the blood, especially at the early stages of diseases. Therefore, we developed an ultrasensitive and easy-to-use immunosensor based on a three-dimensional (3D) bioplatform for the determination of the total MMP-9 concentration in plasma. The used 3D bioplatform (G2 poly(amidoamine) dendrimer; PAMAM) improved the sensitivity of the determination by significantly expanding the surface area of the receptor layer. The antigen-antibody recognition process was controlled by quartz crystal microbalance with dissipation (QCM-D) and electrochemical impedance spectroscopy (EIS). The effect of the orientation of antibody molecules in the sensing layer on the work parameters of the immunosensor was analyzed using unmodified PAMAM (PAMAM-NH₂) and PAMAM functionalized with -COOH groups (PAMAM-COOH). The developed immunosensor based on PAMAM-NH₂ was characterized by a lower detection limit (LOD = 2.0 pg⋅mL^-1) and wider analytical range (1·10^-4 - 5 μg⋅mL^-1 for EIS and QCM-D) compared to PAMAM-COOH immunosensor (EIS: 1·10^-4 - 0.5 μg⋅mL^-1; QCM-D: 5·10^-4 - 0.5 μg⋅mL^-1). The functionality of the proposed device was verified in spiked plasma. The recoveries determined in commercial human and rat plasma and noncommercial rat plasma were very close to the value of 100% and in the range of 96-120% for Au/PAMAM-NH₂/Ab and Au/PAMAM-COOH/Ab immunosensors, respectively. The designed analytical devices showed high selectivity and sensitivity without the use of any amplifiers such as metal nanoparticles or enzymes.

Single atoms and small clusters of atoms may accompany Au and Pd dendrimer-encapsulated nanoparticles

We report the presence of small clusters of atoms (<1 nm) (SCs) and single atoms (SAs) in solutions containing 1-2 nm dendrimer-encapsulated nanoparticles (DENs). Au and Pd DENs were imaged using aberration-corrected scanning transmission electron microscopy (ac-STEM), and energy dispersive spectroscopy (EDS) was used to identify and quantify the SAs/SCs. Two main findings have emerged from this work. First, the presence or absence of SAs/SCs depends on both the terminal functional group of the dendrimer (-NH₂ or -OH) and the elemental composition of the DENs (Au or Pd). Second, dialysis can be used to remove the majority of SAs/SCs in cases where a high density of SAs/SCs are present. The foregoing conclusions provide insights into the mechanisms for Au and Pd DEN synthesis and stability. Ultimately, these results demonstrate the need for careful characterization of systems containing nanoparticles to ensure that SAs/SCs, which may be below the detection limit of most analytical methods, are taken into consideration (especially for catalysis experiments).

Binding mechanisms in dendrimer-surfactant complexes

Molecular dynamics simulations were employed to investigate the impact of interactions between dendritic polyeclectrolytes and amphiphilic surfactants on the supramolecular complex formation. We recognize two crucial parameters that govern association of surfactants within dendrimers: surfactant hydrophobicity, ε^{*}, and dendrimer generation, G. We find that depending on the values of ε^{*} and G encapsulation of surfactants by dendrimers is either noncooperative or cooperative. The noncooperative binding is characterized by absorption of surfactants as unimers, whereas in cooperative binding absorption of unimers is followed by aggregate formation through hydrophobic attractions between the surfactant tails. Our results provide guidelines for controlled encapsulation of guest molecules in dendrimer-based guest-host complexes.

Heterogeneous Dendrimer-Based Catalysts

The present review compiles the advances in the dendritic catalysis within the last two decades, in particular concerning heterogeneous dendrimer-based catalysts and their and application in various processes, such as hydrogenation, oxidation, cross-coupling reactions, etc. There are considered three main approaches to the synthesis of immobilized heterogeneous dendrimer-based catalysts: (1) impregnation/adsorption on silica or carbon carriers; (2) dendrimer covalent grafting to various supports (silica, polystyrene, carbon nanotubes, porous aromatic frameworks, etc.), which may be performed in a divergent (as a gradual dendron growth on the support) or convergent way (as a grafting of whole dendrimer to the support); and (3) dendrimer cross-linking, using transition metal ions (resulting in coordination polymer networks) or bifunctional organic linkers, whose size, polarity, and rigidity define the properties of the resulted material. Additionally, magnetically separable dendritic catalysts, which can be synthesized using the three above-mentioned approaches, are also considered. Dendritic catalysts, synthesized in such ways, can be stored as powders and be easily separated from the reaction medium by filtration/centrifugation as traditional heterogeneous catalysts, maintaining efficiency as for homogeneous dendritic catalysts.

Poly (Amidehydrazide) Hydrogel Particles for Removal of Cu2+ and Cd2+ Ions from Water

Poly(amidoamine)s (PAMAM) are very effective in the removal of heavy metal ions from water due to their abundant amine and amide functional groups, which have a high binding ability to heavy metal ions. We synthesized a new class of hyperbranched poly(amidehydrazide) (PAMH) hydrogel particles from dihydrazides and N,N'-methylenebisacrylamide (MBA) monomer by using the A2 + B4 polycondensation reaction in an inverse suspension polymerization process. In Cd2+ and Cu2+ ion sorption tests, the synthesized dihydrazide-based PAMH hydrogel particles exhibited sorption capacities of 85 mg/g for copper and 47 mg/g for cadmium. Interestingly, the PAMH showed only a 10% decrease in sorption ability in an acidic condition (pH = 4) compared to the diamine-based hyperbranched PAMAM, which showed a ~90% decrease in sorption ability at pH of 4. In addition, PAMH hydrogel particles remove trace amounts of copper (0.67 ppm) and cadmium (0.5 ppm) in water, below the detection limit.

Spatial segregation of mixed-sized counterions in dendritic polyelectrolytes

Langevin dynamics simulations are utilized to study the structure of a dendritic polyelectrolyte embedded in two component mixtures comprised of conventional (small) and bulky counterions. We vary two parameters that trigger conformational properties of the dendrimer: the reduced Bjerrum length, [Formula: see text], which controls the strength of electrostatic interactions and the number fraction of the bulky counterions, [Formula: see text], which impacts on their steric repulsion. We find that the interplay between the electrostatic and the counterion excluded volume interactions affects the swelling behavior of the molecule. As compared to its neutral counterpart, for weak electrostatic couplings the charged dendrimer exists in swollen conformations whose size remains unaffected by [Formula: see text]. For intermediate couplings, the absorption of counterions into the pervaded volume of the dendrimer starts to influence its conformation. Here, the swelling factor exhibits a maximum which can be shifted by increasing [Formula: see text]. For strong electrostatic couplings the dendrimer deswells correspondingly to [Formula: see text]. In this regime a spatial separation of the counterions into core-shell microstructures is observed. The core of the dendrimer cage is preferentially occupied by the conventional ions, whereas its periphery contains the bulky counterions.

Dendronized vesicles: formation, self-organization of dendron-grafted amphiphiles and stability

Fundamental bacterial functions like quorum sensing can be targeted to replace conventional antibiotic therapies. Nanoparticles or vesicles that bind interfacially to charged biomolecules could be used to block quorum sensing pathways in bacteria. Towards this goal, dendronized vesicles (DVs) encompassing polyamidoamine dendron-grafted amphiphiles (PDAs) and dipalmitoyl-sn-glycero-3-phosphocholine lipids are investigated using the molecular dynamics simulation technique in conjunction with an explicit solvent coarse-grained force field. The key physical factors determining the stability of DVs as a function of the dendron generation and relative concentration are identified. The threshold concentration of each dendron generation that yields stable DVs is determined. Dendrons with lower generations rupture the DVs at high relative concentrations due to the electrostatic repulsions between the terminally protonated amines. Whereas, dendrons with intermediate generations demonstrate a mushroom-to-brush transition. Conformational changes in the dendrons expand the outer DV surface, resulting in instability in the DV bilayer. DVs encompassing dendrons with higher generations incur stresses on the bilayer due to their high charge density and spontaneous curvature. The self-organization of PDAs on the DV surface are examined to understand how the asymmetric stresses are minimized across the bilayer. A set of conditions are determined to be conducive for the formation of a single cluster of PDAs that decorates the DV surface like a mesh. Results from this study can potentially guide the design and synthesis of nanoparticles which target quorum sensing pathways in bacteria towards the prevention and treatment of bacterial infections. Furthermore, these nanoparticles can be used in diverse applications in biomedicine, energy or electronics that require synthetic dendronized cells or the adsorption and transport of charged species.

Insight into the Mechanism of Carrier-Mediated Delivery of siRNA in the Cell Membrane Using MD Simulation

The effective translocation of small interfering RNA (siRNA) across cell membranes has become one of the main challenges in gene silencing therapy. In this study, we have carried out molecular dynamics simulations to investigate a systematic procedure with different carriers that could be convenient for efficient siRNA delivery into the cell. Starting with poly-amido-amine (PAMAM) dendrimers and cholesterol molecules as carriers, we have found cholesterol as the most efficient carrier for siRNA when it is covalently attached with the siRNA terminal group. Our simulations show that binding of this complex in the lipid membrane alters the structure and dynamics of the nearby lipids to initiate the translocation process. Potential of mean force (PMF) was computed for siRNA with the carriers along the bilayer normal to understand the spontaneity of the process. Though all the PMF profiles show repulsive interaction inside the bilayer, the siRNA with cholesterol shows a comparative attractive interaction (∼27 kcal/mol) with respect to the siRNA-PAMAM complex. Altogether, our results demonstrate the binding interaction of the siRNA-carrier complex in the lipid membrane and propose a theoretical model for the efficient carrier by comparative study of the binding. The probable mechanism of the translocation process is also provided by the alteration of the lipid structure and dynamics for specifically siRNA-cholesterol binding.

Modulating Interdendrimer Interactions through Surface Adsorption

Physical confinement of polymers not only affects their structure but also modifies their effective interaction profiles. In this article, we investigate the nature of graphene-adsorbed poly(amidoamine) (PAMAM) dendrimers' interactions using fully atomistic molecular dynamics simulations. Using the umbrella sampling technique, we calculate the potential of mean force (PMF) profiles for the interaction between two graphene-adsorbed PAMAM dendrimers of generations 3 and 4 as a function of their protonation levels. We find that the attractive PMF profile observed for the interaction between two nonprotonated (high pH) PAMAM dendrimers in bulk becomes repulsive upon adsorption. Also, the repulsive interdendrimer interactions known in bulk for the protonated dendrimers become enhanced for the adsorbed case. We further explain these weakened interactions by explicitly showing that the dendrimer-graphene interaction is an order of magnitude larger than the dendrimer-dendrimer bulk interaction. Using the force integration method, we obtain the contributions from various subinteractions present in the system, that is, dendrimer-water, dendrimer-ions, dendrimer-graphene, and dendrimer-dendrimer to the total PMF. From these contributions, we conclude that the reduced dendrimer-dendrimer interactions in the adsorbed case, as compared to those in bulk, lead to the enhanced repulsive effective interdendrimer interactions. Our PMF profiles fit well with the sum of exponential and Gaussian functions, proposed in the bulk interdendrimer interaction study. We hope the current results provide the microscopic origin of how adsorption weakens the interpolymer interactions in general.

Understanding the Thermodynamics of the Binding of PAMAM Dendrimers to Graphene: A Combined Analytical and Simulation Study

We investigate the thermodynamics of the binding of a poly(amidoamine) dendrimer to an uncharged graphene sheet as a function of the pH level using umbrella sampling simulations and a mean-field theory for generations three and four. We find that the dendrimer strongly binds to the graphene sheet ( O (100) kcal/mol) from our potential of mean force (PMF) calculations. In specific, we find that the dendrimer binds the most at neutral pH (∼7) and the least at low pH (∼4). We explain this nonmonotonic nature of the dendrimer's adsorption by studying the interactions contributing to the PMF, i.e., the dendrimer-graphene, dendrimer-water, and dendrimer-ion interactions. We also corroborate our PMF calculations with molecular mechanics generalized Born surface area analysis and free energies obtained from a mean-field theory of Flory-Huggins-Debye-Hückel type [ Muthukumar , M. , J. Chem. Phys. 2010 , 132 , 084901 ], including electrostatic interactions. We find that the van der Waals interactions between the dendrimer and the graphene alone cannot capture the accurate trends in the binding free energies (BEs) as a function of pH. The solvent and the counterions present in the system are also found to have a major influence on these trends. We demonstrate that the dendrimer-graphene and dendrimer-water interactions become favorable, whereas the dendrimer-ion interaction becomes unfavorable, as the dendrimer binds to graphene. These opposing effects lead to the observed nonmonotonicity in the BE trends. Our theoretical model also reproduces these trends in the subinteractions contributing to the PMF. To the best of our knowledge, this is a novel attempt where an equivalence between theory and simulations is made in the context of the dendrimer's adsorption.

Mechanisms underlying interactions between PAMAM dendron-grafted surfaces with DPPC membranes

Biofouling is a pervasive problem which demands the creation of smart, antifouling surfaces. Towards this end, we examine the interactions between a dipalmitoylphosphatidylcholine (DPPC) lipid bilayer and a polyamidoamine (PAMAM) dendron-grafted surface. In addition, we investigate the impact of dendron generation on the system behavior. To resolve the multiscale dynamical processes occurring over a large spatial scale, we employ Molecular Dynamics simulations with a coarse-grained implicit solvent force field. Our results demonstrate the transient and equilibrium system dynamics to be determined by the PAMAM dendron generation along with the underlying mechanisms. Higher generation dendrons are observed to favor penetration of the DPPC molecules into the dendron branches, thereby enabling sustained interactions between the membrane and the dendron-grafted surface. Under equilibrium, the membrane adopts a bowl-shaped morphology whose dimensions are determined by the dendron generation and density of interactions. The results from our study can be used to guide the design of novel surfaces with selective antifouling properties which can prevent the adsorption of microorganisms onto lipid membranes.

The interactions between a DPPC lipid membrane and a PAMAM dendron-grafted surface.