Pyrophosphate ion-triggered competitive displacement of ssDNA from a metal-organic framework and its application in fluorescent sensing of alkaline phosphatase

DNA-directed assembly of nanomaterials and their biomedical applications

In the past decades, DNA has been widely used in the field of nanostructures due to its unique programmable properties. Besides being used to form its own diverse structures such as the assembly of DNA origami, DNA can also be used for the assembly of nanostructures with other materials. In this review, different strategies for the functionalization of DNA on nanoparticle surfaces are listed, and the roles of DNA in the assembly of nanostructures as well as the influencing factors are discussed. Finally, the biomedical applications of DNA-assembled nanostructures were summarized. This review provided new insight into the application of DNA in nanostructure assembly.

Colorimetric Sensing Strategy through the Coordination Chemistry between Ascorbic Acid 2-Phosphate and Copper Ions

The coordination chemistry between phosphorylated molecules and metal ions has been reported, while few studies focus on its sensing capability. Herein, we report a colorimetric sensing strategy through the coordination chemistry between ascorbic acid 2-phosphate (AAP) and copper ions. The phosphate group-containing AAP can coordinate with copper ions to induce a visible color change from blue to green in a rapid way, which can be easily read by the naked eye or a smartphone based on the blue-to-green (B/G) ratio. This coordination chemistry provides a facile and convenient strategy for designing colorimetric assays. Alkaline phosphatase can catalyze the hydrolysis of AAP to ascorbic acid (AA), thus modulating the AAP/AA transformation and the AAP-mediated coordination, offering a straightforward way for monitoring the enzymatic activity. This colorimetric sensing strategy shows good performances in stability, sensitivity, cost, and scale-up production, holding great promise as a point-of-care technique for diagnostic applications.

High Catalytic Activity of Fluorophore-Labeled Y-Shaped DNAzyme/3D MOF-MoS2NBs as a Versatile Biosensing Platform for the Simultaneous Detection of Hg2+, Ni2+, and Ag+ Ions

In this study, we have designed a three-fluorophore-labeled Y-shaped DNAzyme with a high catalytic cleavage activity and a three-dimensional (3D) MOF-MoS₂NB (metal-organic framework fused with molybdenum disulfide nanobox), which was synthesized as an efficient quencher of the fluorescent biosensor. The synthesized porous 3D MOF-MoS₂NBs and Y-shaped DNAzyme exhibited a good analytical response toward the simultaneous multiple detections of Hg²⁺, Ni²⁺, and Ag⁺ ions over the other coexisting metal ions. More specifically, the three kinds of enzyme aptamer and substrate aptamer (SA) were hybridized and annealed to form the Y-shaped DNAzyme structure and labeled with three different fluorophores such as FAM, TAMRA, and ROX over the 3'-end of SA. When the targets were induced, the DNAzyme was triggered to cleave the fluorophore-labeled SAs. Then, the cleaved SAs (FAM-SA, TAMRA-SA, and ROX-SA) were adsorbed on the 3D MOF-MoS₂NB surface to quench the fluorescence signal due to a noncovalent interaction (van der Waals and π-π stacking interaction), which transmuted the fluorescence on-state to off-state. As a result, the fluorescence assay confiscated the high selectivity and sensitivity for the target analytes of Hg²⁺, Ni²⁺, and Ag⁺ ions achieved for the detection limits of 0.11 nM, 7.8 μM, and 0.25 nM, respectively. Accordingly, the sensitivity of the developed sensor was explored with a better lower detection limit than the previously reported biosensors. The utility of the designed Y-shaped DNAzyme may find a broad field of application in real water sample analysis with interfering contaminants.

State-of-the-art progress of switch fluorescence biosensors based on metal-organic frameworks and nucleic acids

Metal-organic frameworks (MOFs) have captured substantial attention of an increasing number of scientists working in sensing analysis fields, due to their large surface area, high porosity, and tunable structure. Recently, MOFs as attractive fluorescence quenchers have been extensively investigated. Given their high quenching efficiency toward the fluorescence intensity of dyes-labeled specific biological recognition molecules, such as nucleic acids, MOFs have been widely developed to switch fluorescence biosensors with low background fluorescence signal. These strategies not only lead to specificity, simplicity, and low cost of biosensors, but also possess advantages such as ultrasensitive, rapid, and multiple detection of switch fluorescence methods. At present, researches of the analysis of switch fluorescence biosensors based on MOFs and nucleic acids mainly focus on sensing of different types of in vitro and intracellular analytes, indicating their increasing potential. In this review, we briefly introduce the principle of switch fluorescence biosensor and the mechanism of fluorescence quenching of MOFs, and mainly discuss and summarize the state-of-the-art advances of MOFs and nucleic acids-based switch fluorescence biosensors over the years 2013 to 2020. Most of them have been proposed to the in vitro detection of different types of analytes, showing their wide scope and applicability, such as deoxyribonucleic acid (DNAs), ribonucleic acid (RNAs), proteins, enzymes, antibiotics, and heavy metal ions. Besides, some of them have also been applied to the bioimaging of intracellular analytes, emerging their potential for biomedical applications, for example, cellular adenosine triphosphate (ATP) and subcellular glutathione (GSH). Finally, the remaining challenges in this sensing field and prospects for future research trends are addressed. Graphical abstract.

Metal–organic frameworks as photoluminescent biosensing platforms: mechanisms and applications

Recent progress of MOF-based photoluminescent platforms: a comprehensive overview of their applications in biosensing and underlying mechanisms.

Bifunctional MIL-53(Fe) with pyrophosphate-mediated peroxidase-like activity and oxidation-stimulated fluorescence switching for alkaline phosphatase detection

Alkaline phosphatase (ALP) is extensively used as a clinical biomarker because of its close relevance with a variety of diseases. Thus, exploring reliable and practical methods for ALP analysis is of great significance. In the present work, we explored MIL-53(Fe) as a bifunctional platform with pyrophosphate (PPi)-mediated peroxidase-like activity and oxidation-stimulated fluorescence switching for ALP sensing. The proposed MIL-53(Fe) could exhibit favorable peroxidase-mimicking activity to catalytically decompose H2O2 to hydroxyl radicals, which had strong oxidizing ability to oxidize the terephthalic acid bridging ligand, resulting in the oxidation-stimulated turn-on fluorescence of MIL-53(Fe) itself. Due to the strong coordination interaction between PPi and Fe3+, the former with a relatively large molecular structure was able to inhibit the catalytic activity of MIL-53(Fe) via capping active Fe3+ sites, leading to the suppression of its self-fluorescence response. When ALP was present, it could hydrolyze the PPi inhibitor and restore the dual functions of MIL-53(Fe) to provide fluorescence again. With the above principle, highly sensitive and selective determination of ALP with a linear scope of 2-80 U L-1 and a detection limit down to 0.7 U L-1 was achieved. The MIL-53(Fe) was also demonstrated to be very reliable in measuring the target in human serum, indicating its great promise as an integrated tool for ALP detection in clinical practice.

Ultrasensitive Assay of Alkaline Phosphatase Based on the Fluorescent Response Difference of the Metal-Organic Framework Sensor

The assay of alkaline phosphatase (ALP) is important in clinical diagnosis because the abnormal expression of this enzyme is related to many serious diseases. In this work, using a luminescent metal-organic framework (MOF) as the sensor, a fluorescent method was developed for the activity assay of ALP. With nanoscale particle size, the prepared MOF sensor exhibited good dispersability and stable photoluminescence in aqueous suspension. The emission of this MOF is inert to p-nitrophenylphosphate (NPP) but could be efficiently quenched by its dephosphorylated product, p-nitrophenol. Taking advantage of this feature, this MOF was added to the system of ALP-catalyzed NPP dephosphorylation to transduce the proceeding of the reaction real-timely to the fluorescent signal. The enzyme activity could be calculated based on the recorded kinetic trace. This method presented a low detection limit (2 × 10-3 U L-1) and a wide quantification range (0.6-90 U L-1) in our experiments, showing its quantification capability challenges the best of current ALP analytical methods. As a practical application, our method was successfully applied to the ALP analysis in human serum samples.

Facile colorimetric detection of alkaline phosphatase activity based on the target-induced valence state regulation of oxidase-mimicking Ce-based nanorods

Alkaline phosphatase (ALP) is widely recognized as a significant biomarker for lots of diseases. For this reason, developing effective and simple methods to monitor ALP activity is strongly necessary. Herein, we propose a novel strategy based on the target-induced valence state regulation of oxidase-mimicking Ce-based nanorods for ALP activity sensing. The mixed-valent Ce-based material (MVCM) with a relatively high Ce(iv)/Ce(iii) ratio can exhibit good oxidase-like activity to trigger the catalytic oxidation of colorless 3,3',5,5'-tetramethylbenzidine (TMB) to blue TMBox in the presence of O₂, resulting in a notable chromogenic reaction. When ALP hydrolyzes ascorbic acid phosphate into ascorbic acid (AA), the formed AA induces the partial reduction of the MVCM to one with a low Ce(iv)/Ce(iii) ratio, which shows much less activity to trigger the chromogenic reaction. According to the above principle, a facile colorimetric assay was developed for ALP activity detection, providing a linear range of 0.5-25 U L^-1 and a limit of detection of 0.1 U L^-1. Besides, the proposed strategy could offer favorable selectivity for ALP activity determination. Accurate sensing of the target in serum was demonstrated by our assay as well, revealing its promise as a reliable tool for clinical diagnosis.

A review on emerging principles and strategies for colorimetric and fluorescent detection of alkaline phosphatase activity

Alkaline phosphatase (ALP) is a natural enzyme that is able to catalyze the dephosphorylation of phosphate esters. It participates in a great number of biological processes ranging from various metabolisms to signal transduction and cellular regulation. Since the abnormality of ALP activity in body is closely associated with many diseases, it has become an important biomarker for clinical diagnosis and treatment. Besides, it is often utilized in enzyme-linked immunosorbent assays. Given these demands, in the last few years considerable interest has been focused on exploring new materials and methods for ALP activity detection. In this review, we first made a clear classification on the principles that could be used for ALP activity determination. After that, emerging colorimetric and fluorescent strategies designed on the basis of these principles were systematically summarized. Finally, some perspectives on ALP activity analysis were discussed, hoping to inspire future efforts in the field.

A dual-responsive luminescent metal–organic framework as a recyclable luminescent probe for the highly effective detection of pyrophosphate and nitrofurantoin

Luminescent ZTMOF-1 can discriminately detect PPi and NFT with high selectivity, sensitivity and stability.

Pyrophosphate ion-responsive alginate hydrogel as an effective fluorescent sensing platform for alkaline phosphatase detection

A Cu²⁺-crosslinked alginate hydrogel can encapsulate fluorescent carbon dots for visually monitoring PPi-stimulated gel–sol transition and the further detection of ALP.