1
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Fischer N, Tóth A, Jancsó A, Thulstrup P, Diness F. Inducing α-Helicity in Peptides by Silver Coordination to Cysteine. Chemistry 2024; 30:e202304064. [PMID: 38456607 DOI: 10.1002/chem.202304064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 02/29/2024] [Accepted: 03/01/2024] [Indexed: 03/09/2024]
Abstract
Short peptide sequences consisting of two cysteine residues separated by three other amino acids display complete change from random coil to α-helical secondary structure in response to addition of Ag+ ions. The folded CXXXC/Ag+ complex involves formation of multinuclear Ag+ species and is stable in a wide pH range from below 3 to above 8. The complex is stable through reversed-phase HPLC separation as well as towards a physiological level of chloride ions, based on far-UV circular dichroism spectroscopy. In electrospray MS under acidic conditions a peptide dimer with four Ag+ ions bound was observed, and modelling based on potentiometric experiments supported this to be the dominating complex at neutral pH together with a peptide dimer with 3 Ag+ and one proton at lower pH. The complex was demonstrated to work as a N-terminal nucleation site for inducing α-helicity into longer peptides. This type of silver-mediated peptide assembly and folding may be of more general use for stabilizing not only peptide folding but also for controlling oligomerization even under acidic conditions.
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Affiliation(s)
- Niklas Fischer
- Department of Science and Environment, Roskilde University, Universitetsvej 1, 4000, Roskilde, Denmark
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100, København Ø, Denmark
| | - Annamária Tóth
- Department of Molecular and Analytical Chemistry, University of Szeged, Dómtér 7-8, H-6720, Szeged, Hungary
| | - Attila Jancsó
- Department of Molecular and Analytical Chemistry, University of Szeged, Dómtér 7-8, H-6720, Szeged, Hungary
| | - Peter Thulstrup
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100, København Ø, Denmark
| | - Frederik Diness
- Department of Science and Environment, Roskilde University, Universitetsvej 1, 4000, Roskilde, Denmark
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100, København Ø, Denmark
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2
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Gil-Moles M, O'Beirne C, Esarev IV, Lippmann P, Tacke M, Cinatl J, Bojkova D, Ott I. Silver N-heterocyclic carbene complexes are potent uncompetitive inhibitors of the papain-like protease with antiviral activity against SARS-CoV-2. RSC Med Chem 2023; 14:1260-1271. [PMID: 37484561 PMCID: PMC10357933 DOI: 10.1039/d3md00067b] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Accepted: 05/03/2023] [Indexed: 07/25/2023] Open
Abstract
The ongoing SARS-CoV-2 pandemic has caused a high demand for novel innovative antiviral drug candidates. Despite promising results, metal complexes have been relatively unexplored as antiviral agents in general and in particular against SARS-CoV-2. Here we report on silver NHC complexes with chloride or iodide counter ligands that are potent inhibitors of the SARS-CoV-2 papain-like protease (PLpro) but inactive against 3C-like protease (3CLpro) as another SARS-CoV-2 protease. Mechanistic studies on a selected complex confirmed zinc removal from a zinc binding domain of PLpro as relevant factor of their activity. In addition, enzyme kinetic experiments revealed that the complex is an uncompetitive inhibitor and with this rare type of inhibition it offers great pharmacological advantages in terms selectivity. The silver NHC complexes with iodide ligands showed very low or absent host cell toxicity and triggered strong effects on viral replication in cells infected with SARS-CoV-2, making them promising future antiviral drug candidates.
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Affiliation(s)
- Maria Gil-Moles
- Institute of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig Beethovenstr. 55 38106 Braunschweig Germany
- Departamento de Química, Universidad de La Rioja, Centro de Investigación de Síntesis Química (CISQ), Complejo Científico Tecnológico 26004 Logroño Spain
| | - Cillian O'Beirne
- Institute of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig Beethovenstr. 55 38106 Braunschweig Germany
| | - Igor V Esarev
- Institute of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig Beethovenstr. 55 38106 Braunschweig Germany
| | - Petra Lippmann
- Institute of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig Beethovenstr. 55 38106 Braunschweig Germany
| | - Matthias Tacke
- School of Chemistry, University College Dublin Belfield Dublin 4 Ireland
| | - Jindrich Cinatl
- Institute of Medical Virology, Universitätsklinikum Frankfurt Paul-Ehrlich-Str. 40 60596 Frankfurt Germany
| | - Denisa Bojkova
- Institute of Medical Virology, Universitätsklinikum Frankfurt Paul-Ehrlich-Str. 40 60596 Frankfurt Germany
| | - Ingo Ott
- Institute of Medicinal and Pharmaceutical Chemistry, Technische Universität Braunschweig Beethovenstr. 55 38106 Braunschweig Germany
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3
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Splan KE, Choi SR, Claycomb RE, Eckart-Frank IK, Nagdev S, Rodemeier ME. Disruption of zinc (II) binding and dimeric protein structure of the XIAP-RING domain by copper (I) ions. J Biol Inorg Chem 2023:10.1007/s00775-023-02002-4. [PMID: 37268744 DOI: 10.1007/s00775-023-02002-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Accepted: 04/15/2023] [Indexed: 06/04/2023]
Abstract
Modulation of metalloprotein structure and function via metal ion substitution may constitute a molecular basis for metal ion toxicity and/or metal-mediated functional control. The X-linked Inhibitor of Apoptosis Protein (XIAP) is a metalloprotein that requires zinc for proper structure and function. In addition to its role as a modulator of apoptosis, XIAP has been implicated in copper homeostasis. Given the similar coordination preferences of copper and zinc, investigation of XIAP structure and function upon interaction with copper is relevant. The Really Interesting New Gene (RING) domain of XIAP is representative of a class of zinc finger proteins that utilize a bi-nuclear zinc-binding motif to maintain proper structure and ubiquitin ligase function. Herein, we report the characterization of copper (I) binding to the Zn2-RING domain of XIAP. Electronic absorption studies that monitor copper-thiolate interactions demonstrate that the RING domain of XIAP binds 5-6 Cu(I) ions and that copper is thermodynamically preferred relative to zinc. Repetition of the experiments in the presence of the Zn(II)-specific dye Mag-Fura2 shows that Cu(I) addition results in Zn(II) ejection from the protein, even in the presence of glutathione. Loss of dimeric structure of the RING domain, which is a requirement for its ubiquitin ligase activity, upon copper substitution at the zinc-binding sites, was readily observed via size exclusion chromatography. These results provide a molecular basis for the modulation of RING function by copper and add to the growing body of literature that describe the impact of Cu(I) on zinc metalloprotein structure and function.
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Affiliation(s)
- Kathryn E Splan
- Department of Chemistry, Macalester College, 1600 Grand Avenue, Saint Paul, MN, 55105, USA.
| | - Sylvia R Choi
- Department of Chemistry, Macalester College, 1600 Grand Avenue, Saint Paul, MN, 55105, USA
| | - Ruth E Claycomb
- Department of Chemistry, Macalester College, 1600 Grand Avenue, Saint Paul, MN, 55105, USA
| | - Isaiah K Eckart-Frank
- Department of Chemistry, Macalester College, 1600 Grand Avenue, Saint Paul, MN, 55105, USA
| | - Shreya Nagdev
- Department of Chemistry, Macalester College, 1600 Grand Avenue, Saint Paul, MN, 55105, USA
| | - Madeline E Rodemeier
- Department of Chemistry, Macalester College, 1600 Grand Avenue, Saint Paul, MN, 55105, USA
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4
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Tian Z, Song C, Wang C, Wu H. Hollow polyhedral structures and properties of Ag 2n-1S n- (n = 2-11) clusters: A theoretical study. J Mol Model 2023; 29:105. [PMID: 36949350 DOI: 10.1007/s00894-023-05524-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Accepted: 03/20/2023] [Indexed: 03/24/2023]
Abstract
CONTEXT The structures of Ag2n-1Sn- (n = 2-11) clusters are obtained by the combination of genetic algorithm (GA) and density functional theory (DFT). All the global minimum structures prefer hollow polyhedral structures, in which S-Ag-S element, triangular Ag3S3 and tetragonal Ag4S4 units present to stabilize the structures. The S atoms in the structures appear in μ3-S or μ4-S form. Adiabatic and vertical electron affinities of the clusters have been obtained, which reveals that they increases as cluster size. Stability analysis shows that Ag9S5- and Ag19S10- have special stability. The HOMO, LUMO orbitals of the clusters are obtained and the orbital components of them are calculated. The HOMO orbitals are mainly from the p orbitals of S atoms, whereas the s, p and d orbitals of Ag atoms contribute much bigger than the p orbitals of S atoms for LUMO orbitals. The orbital delocalization indexes (ODI) of the HOMOs and LUMOs are calculated, and the small ODIs of the HOMOs and LUMOs for n = 4-10 reveal that these orbitals are highly delocalized. By studying the projected density of states and molecular orbitals of Ag9S5- and Ag19S10- clusters, it is found that their molecular orbitals have superatomic properties. Superatomic properties play an important role in stabilizing clusters. METHODS This work used combined genetic algorithm and density functional theory (GA-DFT), and PBE0/Lanl2tz(Ag)/6-311G(d,p)(S) method to optimize the structures. Gaussian 16 program, Gauss view 6.0.16 program and Multiwfn 3.8 code are the softwares used.
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Affiliation(s)
- Zhimei Tian
- School of Chemistry and Materials Engineering, Fuyang Normal University, Fuyang, 236037, Anhui, China
| | - Chongfu Song
- School of Chemistry and Materials Engineering, Fuyang Normal University, Fuyang, 236037, Anhui, China.
| | - Chang Wang
- School of Chemistry and Materials Engineering, Fuyang Normal University, Fuyang, 236037, Anhui, China
| | - Hai Wu
- School of Chemistry and Materials Engineering, Fuyang Normal University, Fuyang, 236037, Anhui, China
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Kerber O, Tran J, Misiaszek A, Chorążewska A, Bal W, Krężel A. Zn(II) to Ag(I) Swap in Rad50 Zinc Hook Domain Leads to Interprotein Complex Disruption through the Formation of Highly Stable Ag x(Cys) y Cores. Inorg Chem 2023; 62:4076-4087. [PMID: 36863010 PMCID: PMC10015552 DOI: 10.1021/acs.inorgchem.2c03767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]
Abstract
The widespread application of silver nanoparticles in medicinal and daily life products increases the exposure to Ag(I) of thiol-rich biological environments, which help control the cellular metallome. A displacement of native metal cofactors from their cognate protein sites is a known phenomenon for carcinogenic and otherwise toxic metal ions. Here, we examined the interaction of Ag(I) with the peptide model of the interprotein zinc hook (Hk) domain of Rad50 protein from Pyrococcus furiosus, a key player in DNA double-strand break (DSB) repair. The binding of Ag(I) to 14 and 45 amino acid long peptide models of apo- and Zn(Hk)2 was experimentally investigated by UV-vis spectroscopy, circular dichroism, isothermal titration calorimetry, and mass spectrometry. The Ag(I) binding to the Hk domain was found to disrupt its structure via the replacement of the structural Zn(II) ion by multinuclear Agx(Cys)y complexes. The ITC analysis indicated that the formed Ag(I)-Hk species are at least 5 orders of magnitude stronger than the otherwise extremely stable native Zn(Hk)2 domain. These results show that Ag(I) ions may easily disrupt the interprotein zinc binding sites as an element of silver toxicity at the cellular level.
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Affiliation(s)
- Olga Kerber
- Department of Chemical Biology, Faculty of Biotechnology, University of Wrocław, Joliot-Curie 14a, 50-383 Wrocław, Poland
| | - Józef Tran
- Department of Chemical Biology, Faculty of Biotechnology, University of Wrocław, Joliot-Curie 14a, 50-383 Wrocław, Poland
| | - Alicja Misiaszek
- Department of Chemical Biology, Faculty of Biotechnology, University of Wrocław, Joliot-Curie 14a, 50-383 Wrocław, Poland
| | - Aleksandra Chorążewska
- Department of Chemical Biology, Faculty of Biotechnology, University of Wrocław, Joliot-Curie 14a, 50-383 Wrocław, Poland
| | - Wojciech Bal
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, 02-106 Warsaw, Poland
| | - Artur Krężel
- Department of Chemical Biology, Faculty of Biotechnology, University of Wrocław, Joliot-Curie 14a, 50-383 Wrocław, Poland
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Kose O, Mantecca P, Costa A, Carrière M. Putative adverse outcome pathways for silver nanoparticle toxicity on mammalian male reproductive system: a literature review. Part Fibre Toxicol 2023; 20:1. [PMID: 36604752 PMCID: PMC9814206 DOI: 10.1186/s12989-022-00511-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Accepted: 12/11/2022] [Indexed: 01/07/2023] Open
Abstract
BACKGROUND Adverse outcome pathways (AOPs) are conceptual frameworks that organize knowledge about biological interactions and toxicity mechanisms. They present a sequence of events commencing with initial interaction(s) of a stressor, which defines the perturbation in a biological system (molecular initiating event, MIE), and a dependent series of key events (KEs), ending with an adverse outcome (AO). AOPs have recently become the subject of intense studies in a view to better understand the mechanisms of nanomaterial (NM) toxicity. Silver nanoparticles (Ag NPs) are one of the most explored nanostructures and are extensively used in various application. This, in turn, has increased the potential for interactions of Ag NPs with environments, and toxicity to human health. The aim of this study was to construct a putative AOPs (pAOP) related to reproductive toxicity of Ag NPs, in order to lay the groundwork for a better comprehension of mechanisms affecting both undesired toxicity (against human cell) and expected toxicity (against microorganisms). METHODS PubMed and Scopus were systematically searched for peer-reviewed studies examining reproductive toxicity potential of Ag NPs. The quality of selected studies was assessed through ToxRTool. Eventually, forty-eight studies published between 2005 and 2022 were selected to identify the mechanisms of Ag NPs impact on reproductive function in human male. The biological endpoints, measurements, and results were extracted from these studies. Where possible, endpoints were assigned to a potential KE and an AO using expert judgment. Then, KEs were classified at each major level of biological organization. RESULTS We identified the impairment of intracellular SH-containing biomolecules, which are major cellular antioxidants, as a putative MIE, with subsequent KEs defined as ROS accumulation, mitochondrial damage, DNA damage and lipid peroxidation, apoptosis, reduced production of reproductive hormones and reduced quality of sperm. These successive KEs may result in impaired male fertility (AO). CONCLUSION This research recapitulates and schematically represents complex literature data gathered from different biological levels and propose a pAOP related to the reproductive toxicity induced by AgNPs. The development of AOPs specific to NMs should be encouraged in order to provide new insights to gain a better understanding of NP toxicity.
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Affiliation(s)
- Ozge Kose
- grid.457348.90000 0004 0630 1517Univ. Grenoble-Alpes, CEA, CNRS, IRIG, SyMMES-CIBEST, 38000 Grenoble, France
| | - Paride Mantecca
- grid.7563.70000 0001 2174 1754Polaris Research Centre, Department of Earth and Environmental Sciences, University of Milano-Bicocca, Piazza della Scienza, 1, 20126 Milan, Italy
| | - Anna Costa
- grid.5326.20000 0001 1940 4177CNR-ISTEC, Institute of Science and Technology for Ceramics-National Research Council of Italy, Via Granarolo 64, 48018 Faenza, Italy
| | - Marie Carrière
- Univ. Grenoble-Alpes, CEA, CNRS, IRIG, SyMMES-CIBEST, 38000, Grenoble, France.
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7
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Kluska K, Veronesi G, Deniaud A, Hajdu B, Gyurcsik B, Bal W, Krężel A. Structures of Silver Fingers and a Pathway to Their Genotoxicity. Angew Chem Int Ed Engl 2022; 61:e202116621. [PMID: 35041243 PMCID: PMC9303758 DOI: 10.1002/anie.202116621] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Indexed: 12/16/2022]
Abstract
Recently, we demonstrated that AgI can directly replace ZnII in zinc fingers (ZFs). The cooperative binding of AgI to ZFs leads to a thermodynamically irreversible formation of silver clusters destroying the native ZF structure. Thus, a reported loss of biological function of ZF proteins is a likely consequence of such replacement. Here, we report an X-ray absorption spectroscopy (XAS) study of Agn Sn clusters formed in ZFs to probe their structural features. Selective probing of the local environment around AgI by XAS showed the predominance of digonal AgI coordination to two sulfur donors, coordinated with an average Ag-S distance at 2.41 Å. No Ag-N bonds were present. A mixed AgS2 /AgS3 geometry was found solely in the CCCH AgI -ZF. We also show that cooperative replacement of ZnII ions with the studied Ag2 S2 clusters occurred in a three-ZF transcription factor protein 1MEY#, leading to a dissociation of 1MEY# from the complex with its cognate DNA.
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Affiliation(s)
- Katarzyna Kluska
- Department of Chemical Biology, Faculty of Biotechnology, University of Wrocław, F. Joliot-Curie 14a, 50-383, Wrocław, Poland
| | - Giulia Veronesi
- Univ. Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux, 38000, Grenoble, France
| | - Aurélien Deniaud
- Univ. Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux, 38000, Grenoble, France
| | - Bálint Hajdu
- Department of Inorganic and Analytical Chemistry, Faculty of Science and Informatics, University of Szeged, Dóm tér 7, 6720, Szeged, Hungary
| | - Béla Gyurcsik
- Department of Inorganic and Analytical Chemistry, Faculty of Science and Informatics, University of Szeged, Dóm tér 7, 6720, Szeged, Hungary
| | - Wojciech Bal
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, 02-106, Warsaw, Poland
| | - Artur Krężel
- Department of Chemical Biology, Faculty of Biotechnology, University of Wrocław, F. Joliot-Curie 14a, 50-383, Wrocław, Poland
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Kluska K, Veronesi G, Deniaud A, Hajdu B, Gyurcsik B, Bal W, Krezel A. Structures of Silver Fingers and a Pathway to Their Genotoxicity. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202116621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Katarzyna Kluska
- University of Wroclaw: Uniwersytet Wroclawski Faculty of Biotechnology, Department of Chemical Biology 50-383 Wrocław POLAND
| | - Giulia Veronesi
- Université Grenoble Alpes: Universite Grenoble Alpes Laboratoire de Chimie et Biologie des Metaux F-38000 Grenoble FRANCE
| | - Aurelien Deniaud
- Université de Grenoble I: Universite Grenoble Alpes Laboratoire de Chimie at Biologie des Metaux F-38000 Grenoble FRANCE
| | - Balint Hajdu
- University of Szeged: Szegedi Tudomanyegyetem Department of Inorganic Analytical Chemistry H-6720 Szeged HUNGARY
| | - Bela Gyurcsik
- University of Szeged: Szegedi Tudomanyegyetem Depertment of Inorganic Analytical Chemistry H-6720 Szeged HUNGARY
| | - Wojciech Bal
- Polish Academy of Sciences: Polska Akademia Nauk Institute of Biochemistry and Biophysics 02-106 Warsaw POLAND
| | - Artur Krezel
- University of Wroclaw Department of Chemical Biology, Faculty of Biotechnology F. Joliot-Curie 14A 50-383 Wrocław POLAND
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Abstract
The functions, purposes, and roles of metallothioneins have been the subject of speculations since the discovery of the protein over 60 years ago. This article guides through the history of investigations and resolves multiple contentions by providing new interpretations of the structure-stability-function relationship. It challenges the dogma that the biologically relevant structure of the mammalian proteins is only the one determined by X-ray diffraction and NMR spectroscopy. The terms metallothionein and thionein are ambiguous and insufficient to understand biological function. The proteins need to be seen in their biological context, which limits and defines the chemistry possible. They exist in multiple forms with different degrees of metalation and types of metal ions. The homoleptic thiolate coordination of mammalian metallothioneins is important for their molecular mechanism. It endows the proteins with redox activity and a specific pH dependence of their metal affinities. The proteins, therefore, also exist in different redox states of the sulfur donor ligands. Their coordination dynamics allows a vast conformational landscape for interactions with other proteins and ligands. Many fundamental signal transduction pathways regulate the expression of the dozen of human metallothionein genes. Recent advances in understanding the control of cellular zinc and copper homeostasis are the foundation for suggesting that mammalian metallothioneins provide a highly dynamic, regulated, and uniquely biological metal buffer to control the availability, fluctuations, and signaling transients of the most competitive Zn(II) and Cu(I) ions in cellular space and time.
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Affiliation(s)
- Artur Krężel
- Department of Chemical Biology, Faculty of Biotechnology, University of Wrocław, Wrocław 50-383, Poland
| | - Wolfgang Maret
- Departments of Biochemistry and Nutritional Sciences, School of Life Course Sciences, Faculty of Life Sciences and Medicine, King's College London, London SE1 9NH, U.K
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10
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Tardillo Suárez V, Gallet B, Chevallet M, Jouneau PH, Tucoulou R, Veronesi G, Deniaud A. Correlative transmission electron microscopy and high-resolution hard X-ray fluorescence microscopy of cell sections to measure trace element concentrations at the organelle level. J Struct Biol 2021; 213:107766. [PMID: 34216761 DOI: 10.1016/j.jsb.2021.107766] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 06/22/2021] [Accepted: 06/23/2021] [Indexed: 11/18/2022]
Abstract
Metals are essential for life and their concentration and distribution in organisms are tightly regulated. Indeed, in their free form, most transition metal ions are toxic. Therefore, an excess of physiologic metal ions or the uptake of non-physiologic metal ions can be highly detrimental to the organism. It is thus fundamental to understand metal distribution under physiological, pathological or environmental conditions, for instance in metal-related pathologies or upon environmental exposure to metals. Elemental imaging techniques can serve this purpose, by allowing the visualization and the quantification of metal species in tissues down to the level of cell organelles. Synchrotron radiation-based X-ray fluorescence (SR-XRF) microscopy is one of the most sensitive techniques to date, and great progress was made to reach nanoscale spatial resolution. Here we propose a correlative method to couple SR-XRF to electron microscopy (EM), with the possibility to quantify selected elemental contents in a specific organelle of interest with 50 × 50 nm2 raster scan resolution. We performed EM and SR-XRF on the same section of hepatocytes exposed to silver nanoparticles, in order to identify mitochondria through EM and visualize Ag co-localized with these organelles through SR-XRF. We demonstrate the accumulation of silver in mitochondria, which can reach a 10-fold higher silver concentration compared to the surrounding cytosol. The sample preparation and experimental setup can be adapted to other scientific questions, making the correlative use of SR-XRF and EM suitable to address a large panel of biological questions related to metal homeostasis.
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Affiliation(s)
| | - Benoit Gallet
- Institut de Biologie Structurale, CEA, CNRS, Univ. Grenoble Alpes, 71 Avenue des Martyrs, F-38042 Grenoble, France
| | - Mireille Chevallet
- Univ. Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux, F-38000 Grenoble, France
| | | | - Rémi Tucoulou
- ESRF, The European Synchrotron. 71 avenue des Martyrs, 38000 Grenoble, France
| | - Giulia Veronesi
- ESRF, The European Synchrotron. 71 avenue des Martyrs, 38000 Grenoble, France; Univ. Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux, F-38000 Grenoble, France.
| | - Aurélien Deniaud
- Univ. Grenoble Alpes, CNRS, CEA, IRIG, Laboratoire de Chimie et Biologie des Métaux, F-38000 Grenoble, France.
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11
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Zhang J, Yuan Y, Ye T, Tan S, Liu N, Qian J, Huang S, Xia F. Highly efficient zinc finger peptide detection with ZIF-8-modified micropipets. Chem Commun (Camb) 2021; 56:10855-10858. [PMID: 32895684 DOI: 10.1039/d0cc04683c] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Zeolitic imidazolate framework-8 (ZIF-8)-modified micropipets can be an effective sensing platform for zinc finger peptides, the limit of detection of which reaches 10-2 μg ml-1. A series of techniques for detecting biomolecules are expected to emerge because of its simplicity, low cost, and universality by modifying other functional materials into the micropipets.
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Affiliation(s)
- Jinzheng Zhang
- Key Laboratory of Carbon Materials of Zhejiang Province, College of Chemistry & Materials Engineering, Wenzhou University, Wenzhou 325027, P. R. China
| | - Yuqi Yuan
- Key Laboratory of Carbon Materials of Zhejiang Province, College of Chemistry & Materials Engineering, Wenzhou University, Wenzhou 325027, P. R. China
| | - Tingyan Ye
- Key Laboratory of Carbon Materials of Zhejiang Province, College of Chemistry & Materials Engineering, Wenzhou University, Wenzhou 325027, P. R. China
| | - Shiyi Tan
- Key Laboratory of Carbon Materials of Zhejiang Province, College of Chemistry & Materials Engineering, Wenzhou University, Wenzhou 325027, P. R. China
| | - Nannan Liu
- Key Laboratory of Carbon Materials of Zhejiang Province, College of Chemistry & Materials Engineering, Wenzhou University, Wenzhou 325027, P. R. China
| | - Jinjie Qian
- Key Laboratory of Carbon Materials of Zhejiang Province, College of Chemistry & Materials Engineering, Wenzhou University, Wenzhou 325027, P. R. China
| | - Shaoming Huang
- Key Laboratory of Carbon Materials of Zhejiang Province, College of Chemistry & Materials Engineering, Wenzhou University, Wenzhou 325027, P. R. China and School of Materials and Energy, Guangzhou Key Laboratory of Low-Dimensional Materials and Energy Storage Devices, Guangdong University of Technology, Guangzhou 510006, P. R. China
| | - Fan Xia
- Engineering Research Center of Nano-Geomaterials of Ministry of Education, Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430074, P. R. China
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12
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Wątły J, Łuczkowski M, Padjasek M, Krężel A. Phytochelatins as a Dynamic System for Cd(II) Buffering from the Micro- to Femtomolar Range. Inorg Chem 2021; 60:4657-4675. [PMID: 33736430 PMCID: PMC8041291 DOI: 10.1021/acs.inorgchem.0c03639] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Indexed: 01/30/2023]
Abstract
Phytochelatins (PCs) are short Cys-rich peptides with repeating γ-Glu-Cys motifs found in plants, algae, certain fungi, and worms. Their biosynthesis has been found to be induced by heavy metals-both biogenic and toxic. Among all metal inducers, Cd(II) has been the most explored from a biological and chemical point of view. Although Cd(II)-induced PC biosynthesis has been widely examined, still little is known about the structure of Cd(II) complexes and their thermodynamic stability. Here, we systematically investigated glutathione (GSH) and PC2-PC6 systems, with regard to their complex stoichiometries and spectroscopic and thermodynamic properties. We paid special attention to the determination of stability constants using several complementary techniques. All peptides form CdL complexes, but CdL2 was found for GSH, PC2, and partially for PC3. Moreover, binuclear species CdxLy were identified for the series PC3-PC6 in an excess of Cd(II). Potentiometric and competition spectroscopic studies showed that the affinity of Cd(II) complexes increases from GSH to PC4 almost linearly from micromolar (log K7.4GSH = 5.93) to the femtomolar range (log K7.4PC4 = 13.39) and additional chain elongation does not increase the stability significantly. Data show that PCs form an efficient system which buffers free Cd(II) ions in the pico- to femtomolar range under cellular conditions, avoiding significant interference with Zn(II) complexes. Our study confirms that the favorable entropy change is the factor governing the elevation of phytochelatins' stability and illuminates the importance of the chelate effect in shifting the free Gibbs energy.
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Affiliation(s)
| | | | - Michał Padjasek
- Department of Chemical Biology, Faculty
of Biotechnology, University of Wrocław, Joliot-Curie 14a, 50-383 Wrocław, Poland
| | - Artur Krężel
- Department of Chemical Biology, Faculty
of Biotechnology, University of Wrocław, Joliot-Curie 14a, 50-383 Wrocław, Poland
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13
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Cirrhotic Liver of Liver Transplant Recipients Accumulate Silver and Co-Accumulate Copper. Int J Mol Sci 2021; 22:ijms22041782. [PMID: 33670100 PMCID: PMC7916850 DOI: 10.3390/ijms22041782] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 02/05/2021] [Accepted: 02/08/2021] [Indexed: 12/13/2022] Open
Abstract
Silver-based materials are widely used in clinical medicine. Furthermore, the usage of silver containing materials and devices is widely recommended and clinically approved. The impact on human health of the increasing use of silver nanoparticles in medical devices remains understudied, even though Ag-containing dressings are known to release silver into the bloodstream. In this study, we detected a widespread and sometimes significant silver accumulation both in healthy and sick liver biopsies, levels being statistically higher in patients with various hepatic pathologies. 28 healthy and 44 cirrhotic liver samples were investigated. The median amount of 0.049 ppm Ag in livers was measured in cirrhotic livers while the median was 0.0016 ppm for healthy livers (a more than 30-fold difference). The mean tissue concentrations of essential metals, Fe and Zn in cirrhotic livers did not differ substantially from healthy livers, while Cu was positively correlated with Ag. The serum levels of gamma-glutamyl transpeptidase (GGTP) was also positively correlated with Ag in cirrhotic livers. The increased Ag accumulation in cirrhotic livers could be a side effect of wide application of silver in clinical settings. As recent studies indicated a significant toxicity of silver nanoparticles for human cells, the above observation could be of high importance for the public health.
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14
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Skomorokhova EA, Sankova TP, Orlov IA, Savelev AN, Magazenkova DN, Pliss MG, Skvortsov AN, Sosnin IM, Kirilenko DA, Grishchuk IV, Sakhenberg EI, Polishchuk EV, Brunkov PN, Romanov AE, Puchkova LV, Ilyechova EY. Size-Dependent Bioactivity of Silver Nanoparticles: Antibacterial Properties, Influence on Copper Status in Mice, and Whole-Body Turnover. Nanotechnol Sci Appl 2020; 13:137-157. [PMID: 33408467 PMCID: PMC7781014 DOI: 10.2147/nsa.s287658] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 12/04/2020] [Indexed: 12/14/2022] Open
Abstract
Purpose The ability of silver nanoparticles (AgNPs) of different sizes to influence copper metabolism in mice is assessed. Materials and Methods AgNPs with diameters of 10, 20, and 75 nm were fabricated through a chemical reduction of silver nitrate and characterized by UV/Vis spectrometry, transmission and scanning electronic microscopy, and laser diffractometry. To test their bioactivity, Escherichia coli cells, cultured A549 cells, and C57Bl/6 mice were used. The antibacterial activity of AgNPs was determined by inhibition of colony-forming ability, and cytotoxicity was tested using the MTT test (viability, %). Ceruloplasmin (Cp, the major mammalian extracellular copper-containing protein) concentration and enzymatic activity were measured using gel-assay analyses and WB, respectively. In vitro binding of AgNPs with serum proteins was monitored with UV/Vis spectroscopy. Metal concentrations were measured using atomic absorption spectrometry. Results The smallest AgNPs displayed the largest dose- and time-dependent antibacterial activity. All nanoparticles inhibited the metabolic activity of A549 cells in accordance with dose and time, but no correlation between cytotoxicity and nanoparticle size was found. Nanosilver was not uniformly distributed through the body of mice intraperitoneally treated with low AgNP concentrations. It was predominantly accumulated in liver. There, nanosilver was included in ceruloplasmin, and Ag-ceruloplasmin with low oxidase activity level was formed. Larger nanoparticles more effectively interfered with the copper metabolism of mice. Large AgNPs quickly induced a drop of blood serum oxidase activity to practically zero, but after cancellation of AgNP treatment, the activity was rapidly restored. A major fraction of the nanosilver was excreted in the bile with Cp. Nanosilver was bound by alpha-2-macroglobulin in vitro and in vivo, but silver did not substitute for the copper atoms of Cp in vitro. Conclusion The data showed that even at low concentrations, AgNPs influence murine copper metabolism in size-dependent manner. This property negatively correlated with the antibacterial activity of AgNPs.
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Affiliation(s)
- Ekaterina A Skomorokhova
- International Research Center of Functional Materials and Devices of Optoelectronics, ITMO University, St. Petersburg, Russia.,Department of Molecular Genetics, Research Institute of Experimental Medicine, St. Petersburg, Russia
| | - Tatiana P Sankova
- Higher Engineering Physics School of the Institute of Physics, Nanotechnology and Telecommunications, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia
| | - Iurii A Orlov
- International Research Center of Functional Materials and Devices of Optoelectronics, ITMO University, St. Petersburg, Russia
| | - Andrew N Savelev
- Higher Engineering Physics School of the Institute of Physics, Nanotechnology and Telecommunications, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia
| | - Daria N Magazenkova
- Higher Engineering Physics School of the Institute of Physics, Nanotechnology and Telecommunications, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia
| | - Mikhail G Pliss
- Department of Experimental Physiology and Pharmacology, Almazov National Medical Research Centre, St. Petersburg, Russia.,Laboratory of Blood Circulation Biophysics, Pavlov First Saint Petersburg State Medical University, St. Petersburg, Russia
| | - Alexey N Skvortsov
- Higher Engineering Physics School of the Institute of Physics, Nanotechnology and Telecommunications, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia
| | - Ilya M Sosnin
- International Research Center of Functional Materials and Devices of Optoelectronics, ITMO University, St. Petersburg, Russia
| | - Demid A Kirilenko
- International Research Center of Functional Materials and Devices of Optoelectronics, ITMO University, St. Petersburg, Russia.,Center of Nanoheterostructures Physics, Ioffe Institute, Russian Academy of Sciences, St. Petersburg, Russia
| | - Ivan V Grishchuk
- Higher Engineering Physics School of the Institute of Physics, Nanotechnology and Telecommunications, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia
| | - Elena I Sakhenberg
- Laboratory of Cell Protection Mechanisms, Institute of Cytology, Russian Academy of Sciences, St. Petersburg, Russia
| | - Elena V Polishchuk
- International Research Center of Functional Materials and Devices of Optoelectronics, ITMO University, St. Petersburg, Russia.,Telethon Institute of Genetics and Medicine, Pozzuoli, Naples, Italy
| | - Pavel N Brunkov
- International Research Center of Functional Materials and Devices of Optoelectronics, ITMO University, St. Petersburg, Russia.,Center of Nanoheterostructures Physics, Ioffe Institute, Russian Academy of Sciences, St. Petersburg, Russia
| | - Alexey E Romanov
- International Research Center of Functional Materials and Devices of Optoelectronics, ITMO University, St. Petersburg, Russia.,Center of Nanoheterostructures Physics, Ioffe Institute, Russian Academy of Sciences, St. Petersburg, Russia
| | - Ludmila V Puchkova
- International Research Center of Functional Materials and Devices of Optoelectronics, ITMO University, St. Petersburg, Russia.,Department of Molecular Genetics, Research Institute of Experimental Medicine, St. Petersburg, Russia.,Higher Engineering Physics School of the Institute of Physics, Nanotechnology and Telecommunications, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia
| | - Ekaterina Yu Ilyechova
- International Research Center of Functional Materials and Devices of Optoelectronics, ITMO University, St. Petersburg, Russia.,Department of Molecular Genetics, Research Institute of Experimental Medicine, St. Petersburg, Russia
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15
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Morante S, La Penna G, Rossi G, Stellato F. SARS-CoV-2 Virion Stabilization by Zn Binding. Front Mol Biosci 2020; 7:222. [PMID: 33195401 PMCID: PMC7533540 DOI: 10.3389/fmolb.2020.00222] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Accepted: 08/07/2020] [Indexed: 12/18/2022] Open
Abstract
Zinc plays a crucial role in the process of virion maturation inside the host cell. The accessory Cys-rich proteins expressed in SARS-CoV-2 by genes ORF7a and ORF8 are likely involved in zinc binding and in interactions with cellular antigens activated by extensive disulfide bonds. In this report we provide a proof of concept for the feasibility of a structural study of orf7a and orf8 proteins. A conceivable hypothesis is that lack of cellular zinc, or substitution thereof, might lead to a significant slowing down of viral maturation.
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Affiliation(s)
- Silvia Morante
- Dipartimento di Fisica, Università di Roma "Tor Vergata", Rome, Italy.,INFN, Sezione di Roma Tor Vergata, Rome, Italy
| | - Giovanni La Penna
- INFN, Sezione di Roma Tor Vergata, Rome, Italy.,CNR, Insitute of Chemistry of Organometallic Compounds, Firenze, Italy
| | - Giancarlo Rossi
- Dipartimento di Fisica, Università di Roma "Tor Vergata", Rome, Italy.,INFN, Sezione di Roma Tor Vergata, Rome, Italy.,Centro Fermi - Museo Storico della Fisica e Centro Studi e Ricerche "Enrico Fermi", Rome, Italy
| | - Francesco Stellato
- Dipartimento di Fisica, Università di Roma "Tor Vergata", Rome, Italy.,INFN, Sezione di Roma Tor Vergata, Rome, Italy
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