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Ćosićová M, Dvořák J, Čížek M. Solving Vibronic Dynamics in Electron Continuum. J Chem Theory Comput 2024; 20:2696-2710. [PMID: 38323899 PMCID: PMC11008110 DOI: 10.1021/acs.jctc.3c01217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 01/10/2024] [Accepted: 01/12/2024] [Indexed: 02/08/2024]
Abstract
We present a general two-dimensional model of conical intersection between metastable states that are vibronically coupled not only directly but also indirectly through a virtual electron in the autodetachment continuum. This model is used as a test ground for the design and comparison of iterative solvers for resonance dynamics in low-energy electron-molecule collisions. Two Krylov-subspace methods with various preconditioning schemes are compared. To demonstrate the applicability of the proposed methods on even larger models, we also test the performance of one of the methods on a recent model of vibrational excitation of CO2 by electron impact based on three vibronically coupled discrete states in continuum (Renner-Teller doublet of shape resonances coupled to a sigma virtual state) including four vibrational degrees of freedom. Two-dimensional electron energy-loss spectra resulting from electron-molecule scattering within the models are briefly discussed.
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Affiliation(s)
| | | | - Martin Čížek
- Faculty of Mathematics and
Physics, Institute of Theoretical Physics, Charles University, V Holešovičkách 2, 180 00 Prague, Czech
Republic
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2
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Sedmidubská B, Kočišek J. Interaction of low-energy electrons with radiosensitizers. Phys Chem Chem Phys 2024; 26:9112-9136. [PMID: 38376461 DOI: 10.1039/d3cp06003a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
We provide an experimentalist's perspective on the present state-of-the-art in the studies of low-energy electron interactions with common radiosensitizers, including compounds used in combined chemo-radiation therapy and their model systems. Low-energy electrons are important secondary species formed during the interaction of ionizing radiation with matter. Their role in the radiation chemistry of living organisms has become an important topic for more than 20 years. With the increasing number of works and reviews in the field, we would like to focus here on a very narrow area of compounds that have been shown to have radio-sensitizing properties on the one hand, and high reactivity towards low-energy electrons on the other hand. Gas phase experiments studying electron attachment to isolated molecules and environmental effects on reaction dynamics are reviewed for modified DNA components, nitroimidazoles, and organometallics. In the end, we provide a perspective on the future directions that may be important for transferring the fundamental knowledge about the processes induced by low-energy electrons into practice in the field of rational design of agents for concomitant chemo-radiation therapy.
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Affiliation(s)
- Barbora Sedmidubská
- J. Heyrovský Institute of Physical Chemistry of the CAS, Dolejškova 3, 182223 Prague, Czech Republic.
- Department of Nuclear Chemistry, Faculty of Nuclear Sciences and Physical Engineering, Břehová 7, 11519 Prague, Czech Republic
- Institut de Chimie Physique, UMR 8000 CNRS and Faculté des sciences d'Orsay, Université Paris Saclay, F-91405 Orsay Cedex, France
| | - Jaroslav Kočišek
- J. Heyrovský Institute of Physical Chemistry of the CAS, Dolejškova 3, 182223 Prague, Czech Republic.
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3
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Tańska N, Bandeira E, Souza Barbosa A, Wójcik K, Dylnicka S, Ptasińska-Denga E, Szmytkowski C, Bettega MHF, Możejko P. Electron Scattering from Methyl Formate (HCOOCH 3): A Joint Theoretical and Experimental Study. J Phys Chem A 2023; 127:7594-7604. [PMID: 37644637 PMCID: PMC10510396 DOI: 10.1021/acs.jpca.3c04636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 08/15/2023] [Indexed: 08/31/2023]
Abstract
Elastic low-energy electron collisions with methyl formate have been studied theoretically at the level of various theories. The elastic integral cross section was calculated using Schwinger multichannel and R-matrix methods, in the static-exchange and static-exchange plus polarization levels of approximations for energies up to 15 eV. The absolute total cross section for electron scattering from methyl formate has been measured in a wide energy range (0.2-300 eV) using a 127° electron spectrometer working in the linear transmission configuration. The integral elastic and the absolute total cross sections display a π* shape resonance at around 1.70-1.84 eV, which can be related to the resonance visible for formic acid, and a broad structure located at 7-8 eV, which can be associated to a superposition of σ* shape resonances. Our results were compared with theoretical and experimental results available in the literature and with the results of electron collisions with formic acid. The additivity rule was used to estimate the total cross section of methyl formate and the results agree well with the experimental data.
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Affiliation(s)
- Natalia Tańska
- Institute
of Physics and Applied Computer Science, Faculty of Applied Physics
and Mathematics, Gdańsk University
of Technology, ul. Gabriela Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Edvaldo Bandeira
- Departamento
de Física, Universidade Federal
do Paraná, Caixa Postal 19044, 81531-980 Curitiba, Paraná, Brazil
| | - Alessandra Souza Barbosa
- Departamento
de Física, Universidade Federal
do Paraná, Caixa Postal 19044, 81531-980 Curitiba, Paraná, Brazil
| | - Kuba Wójcik
- Institute
of Physics and Applied Computer Science, Faculty of Applied Physics
and Mathematics, Gdańsk University
of Technology, ul. Gabriela Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Sylwia Dylnicka
- Institute
of Physics and Applied Computer Science, Faculty of Applied Physics
and Mathematics, Gdańsk University
of Technology, ul. Gabriela Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Elżbieta Ptasińska-Denga
- Institute
of Physics and Applied Computer Science, Faculty of Applied Physics
and Mathematics, Gdańsk University
of Technology, ul. Gabriela Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Czesław Szmytkowski
- Institute
of Physics and Applied Computer Science, Faculty of Applied Physics
and Mathematics, Gdańsk University
of Technology, ul. Gabriela Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Márcio H. F. Bettega
- Departamento
de Física, Universidade Federal
do Paraná, Caixa Postal 19044, 81531-980 Curitiba, Paraná, Brazil
| | - Paweł Możejko
- Institute
of Physics and Applied Computer Science, Faculty of Applied Physics
and Mathematics, Gdańsk University
of Technology, ul. Gabriela Narutowicza 11/12, 80-233 Gdańsk, Poland
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4
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Ranković M, Nag P, Anstöter CS, Mensa-Bonsu G, Kumar T P R, Verlet JRR, Fedor J. Resonances in nitrobenzene probed by the electron attachment to neutral and by the photodetachment from anion. J Chem Phys 2022; 157:064302. [PMID: 35963718 DOI: 10.1063/5.0101358] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We probe resonances (transient anions) in nitrobenzene with the focus on the electron emission from these. Experimentally, we populate resonances in two ways: either by the impact of free electrons on the neutral molecule or by the photoexcitation of the bound molecular anion. These two excitation means lead to transient anions in different initial geometries. In both cases, the anions decay by electron emission and we record the electron spectra. Several types of emission are recognized, differing by the way in which the resulting molecule is vibrationally excited. In the excitation of specific vibrational modes, distinctly different modes are visible in electron collision and photodetachment experiments. The unspecific vibrational excitation, which leads to the emission of thermal electrons following the internal vibrational redistribution, shows similar features in both experiments. A model for the thermal emission based on a detailed balance principle agrees with the experimental findings very well. Finally, a similar behavior in the two experiments is also observed for a third type of electron emission, the vibrational autodetachment, which yields electrons with constant final energies over a broad range of excitation energies. The entrance channels for the vibrational autodetachment are examined in detail, and they point to a new mechanism involving a reverse valence to non-valence internal conversion.
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Affiliation(s)
- Miloš Ranković
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Pamir Nag
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Golda Mensa-Bonsu
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Ragesh Kumar T P
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Juraj Fedor
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
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5
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Jurczyk J, Pillatsch L, Berger L, Priebe A, Madajska K, Kapusta C, Szymańska IB, Michler J, Utke I. In Situ Time-of-Flight Mass Spectrometry of Ionic Fragments Induced by Focused Electron Beam Irradiation: Investigation of Electron Driven Surface Chemistry inside an SEM under High Vacuum. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 12:2710. [PMID: 35957140 PMCID: PMC9370286 DOI: 10.3390/nano12152710] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 07/22/2022] [Accepted: 07/29/2022] [Indexed: 06/15/2023]
Abstract
Recent developments in nanoprinting using focused electron beams have created a need to develop analysis methods for the products of electron-induced fragmentation of different metalorganic compounds. The original approach used here is termed focused-electron-beam-induced mass spectrometry (FEBiMS). FEBiMS enables the investigation of the fragmentation of electron-sensitive materials during irradiation within the typical primary electron beam energy range of a scanning electron microscope (0.5 to 30 keV) and high vacuum range. The method combines a typical scanning electron microscope with an ion-extractor-coupled mass spectrometer setup collecting the charged fragments generated by the focused electron beam when impinging on the substrate material. The FEBiMS of fragments obtained during 10 keV electron irradiation of grains of silver and copper carboxylates and shows that the carboxylate ligand dissociates into many smaller volatile fragments. Furthermore, in situ FEBiMS was performed on carbonyls of ruthenium (solid) and during electron-beam-induced deposition, using tungsten carbonyl (inserted via a gas injection system). Loss of carbonyl ligands was identified as the main channel of dissociation for electron irradiation of these carbonyl compounds. The presented results clearly indicate that FEBiMS analysis can be expanded to organic, inorganic, and metal organic materials used in resist lithography, ice (cryo-)lithography, and focused-electron-beam-induced deposition and becomes, thus, a valuable versatile analysis tool to study both fundamental and process parameters in these nanotechnology fields.
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Affiliation(s)
- Jakub Jurczyk
- Laboratory for Mechanics of Materials and Nanostructures, Empa-Swiss Federal Laboratories for Materials Science and Technology, Feuerwerkerstrasse 39, CH-3602 Thun, Switzerland
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology Krakow, Al. Mickiewicza 30, 30-059 Kraków, Poland
| | - Lex Pillatsch
- TOFWERK AG, Schorenstrasse 39, CH-3645 Thun, Switzerland
| | - Luisa Berger
- Laboratory for Mechanics of Materials and Nanostructures, Empa-Swiss Federal Laboratories for Materials Science and Technology, Feuerwerkerstrasse 39, CH-3602 Thun, Switzerland
| | - Agnieszka Priebe
- Laboratory for Mechanics of Materials and Nanostructures, Empa-Swiss Federal Laboratories for Materials Science and Technology, Feuerwerkerstrasse 39, CH-3602 Thun, Switzerland
| | - Katarzyna Madajska
- Faculty of Chemistry, Nicolaus Copernicus University in Toruń, Gagarina 7, 87-100 Toruń, Poland
| | - Czesław Kapusta
- Faculty of Physics and Applied Computer Science, AGH University of Science and Technology Krakow, Al. Mickiewicza 30, 30-059 Kraków, Poland
| | - Iwona B. Szymańska
- Faculty of Chemistry, Nicolaus Copernicus University in Toruń, Gagarina 7, 87-100 Toruń, Poland
| | - Johann Michler
- Laboratory for Mechanics of Materials and Nanostructures, Empa-Swiss Federal Laboratories for Materials Science and Technology, Feuerwerkerstrasse 39, CH-3602 Thun, Switzerland
| | - Ivo Utke
- Laboratory for Mechanics of Materials and Nanostructures, Empa-Swiss Federal Laboratories for Materials Science and Technology, Feuerwerkerstrasse 39, CH-3602 Thun, Switzerland
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6
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Pysanenko A, Grygoryeva K, Kočišek J, Kumar T P R, Fedor J, Ončák M, Fárník M. Stability of pyruvic acid clusters upon slow electron attachment. Phys Chem Chem Phys 2021; 23:4317-4325. [PMID: 33587076 DOI: 10.1039/d0cp06464e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Pyruvic acid represents a key molecule in prebiotic chemistry and it has recently been proposed to be synthesized on interstellar ices. In order to probe the stability of pyruvic acid in the interstellar medium with respect to decomposition by slow electrons, we investigate the electron attachment to its homomolecular and heteromolecular clusters. Using mass spectrometry, we follow the changes in the fragmentation pattern and its dependence on the electron energy for various cluster sizes of pure and microhydrated pyruvic acid. The assignment of fragmentation reaction pathways is supported by ab initio calculations. The fragmentation degree dramatically decreases upon clustering. This decrease is even stronger in the heteromolecular clusters of pyruvic acid with water, where the non-dissociative attachment is by far the strongest channel. In the homomolecular clusters, the dissociative channel leading to dehydrogenation is active over a larger electron energy range than in the isolated molecules. To probe the role of the self-scavenging effects, we explore the excited states of pyruvic acid. This has been done both experimentally, by using electron energy loss spectroscopy, and theoretically, by photochemical calculations. Data on both optically-allowed and forbidden states allow for the explanation of processes emerging upon clustering.
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Affiliation(s)
- Andriy Pysanenko
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague, Czech Republic.
| | - Kateryna Grygoryeva
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague, Czech Republic.
| | - Jaroslav Kočišek
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague, Czech Republic.
| | - Ragesh Kumar T P
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague, Czech Republic.
| | - Juraj Fedor
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague, Czech Republic.
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague, Czech Republic.
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