A guinea pig for conformer selectivity and mechanistic insights into dissociative ionization by photoelectron photoion coincidence: fluorocyclohexane

Isomer-Dependent Threshold Photoelectron Spectroscopy and Dissociative Photoionization Mechanism of Anisaldehyde

We studied the threshold photoionization and dissociative ionization of para-, meta-, and ortho-anisaldehyde by photoelectron photoion coincidence spectroscopy in the 8.20-19.00 eV photon energy range. Vertical ionization energies by equation of motion-ionization potential-coupled cluster singles and doubles (EOM-IP-CCSD) calculations reproduce the photoelectron spectral features in all three isomers. The dissociative photoionization (DPI) pathways of para- and meta-anisaldehyde are similar and differ markedly from those of ortho-anisaldehyde. In the para and meta isomers, the lowest-energy DPI channel corresponds to hydrogen atom loss to form the C₈H₇O₂⁺ fragment at m/z 135, which undergoes sequential dissociation processes at higher energies, such as carbon monoxide loss to C₇H₇O⁺ (m/z 107) and further, sequential CH₃, CH₂O, and CH₂CO losses to produce C₆H₄O⁺ (m/z 92), C₆H₅⁺ (m/z 77), and C₅H₅⁺ (m/z 65), respectively. Carbon monoxide loss from the parent ions, yielding C₇H₈O⁺ (m/z 108), is a subordinate dissociation channel parallel to H atom loss. At higher energies, it also gives rise to sequential formaldehyde (CH₂O) loss to produce C₆H₆⁺ (m/z 78). In the ortho-anisaldehyde cation, the vicinity of the aldehyde and methoxy groups opens up low-energy hydrogen-transfer processes, which allow for seven fragmentation channels to compete effectively with the H- and CO-loss channels. Thus, the fragmentation mechanism changes considerably, thanks to the steric interaction of the substituents. Functional group interactions, in particular H transfer pathways, must therefore be considered when predicting the isomer-specific unimolecular decomposition mechanism of cationic and neutral species, as well as mass spectra for isomers.

A plethora of isomerization processes and hydrogen scrambling in the fragmentation of the methanol dimer cation: a PEPICO study

The valence photoionization of light and deuterated methanol dimers was studied by imaging photoelectron photoion coincidence spectroscopy in the 10.00-10.35 eV photon energy range. Methanol clusters were generated in a rich methanol beam in nitrogen after expansion into vacuum. They generally photoionize dissociatively to protonated methanol cluster cations, (CH₃OH)_nH⁺. However, the stable dimer parent ion (CH₃OH)₂⁺ is readily detected below the dissociation threshold to yield the dominant CH₃OH₂⁺ fragment ion. In addition to protonated methanol, we could also detect the water- and methyl-loss fragment ions of the methanol dimer cation for the first time. These newly revealed fragmentation channels are slow and cannot compete with protonated methanol cation formation at higher internal energies. In fact, the water- and methyl-loss fragment ions appear together and disappear at a ca. 150 meV higher energy in the breakdown diagram. Experiments with selectively deuterated methanol samples showed H scrambling involving two hydroxyl and one methyl hydrogens prior to protonated methanol formation. These insights guided the potential energy surface exploration to rationalize the dissociative photoionization mechanism. The potential energy surface was further validated by a statistical model including isotope effects to fit the experiment for the light and the perdeuterated methanol dimers simultaneously. The (CH₃OH)₂⁺ parent ion dissociates via five parallel channels at low internal energies. The loss of both CH₂OH and CH₃O neutral fragments leads to protonated methanol. However, the latter, direct dissociation channel is energetically forbidden at low energies. Instead, an isomerization transition state is followed by proton transfer from a methyl group, which leads to the CH₃(H)OH⁺⋯CH₂OH ion, the precursor to the CH₂OH-, H₂O-, and CH₃-loss fragments after further isomerization steps, in part by a roaming mechanism. Water loss yields the ethanol cation, and two paths are proposed to account for m/z 49 fragment ions after CH₃ loss. The roaming pathways are quickly outcompeted by hydrogen bond breaking to yield CH₃OH₂⁺, which explains the dominance of the protonated methanol fragment ion in the mass spectrum.

Quantum Chemistry Calculations for Metabolomics

A primary goal of metabolomics studies is to fully characterize the small-molecule composition of complex biological and environmental samples. However, despite advances in analytical technologies over the past two decades, the majority of small molecules in complex samples are not readily identifiable due to the immense structural and chemical diversity present within the metabolome. Current gold-standard identification methods rely on reference libraries built using authentic chemical materials ("standards"), which are not available for most molecules. Computational quantum chemistry methods, which can be used to calculate chemical properties that are then measured by analytical platforms, offer an alternative route for building reference libraries, i.e., in silico libraries for "standards-free" identification. In this review, we cover the major roadblocks currently facing metabolomics and discuss applications where quantum chemistry calculations offer a solution. Several successful examples for nuclear magnetic resonance spectroscopy, ion mobility spectrometry, infrared spectroscopy, and mass spectrometry methods are reviewed. Finally, we consider current best practices, sources of error, and provide an outlook for quantum chemistry calculations in metabolomics studies. We expect this review will inspire researchers in the field of small-molecule identification to accelerate adoption of in silico methods for generation of reference libraries and to add quantum chemistry calculations as another tool at their disposal to characterize complex samples.

Valence Photoionization and Energetics of Vanillin, a Sustainable Feedstock Candidate

We studied the valence photoionization of vanillin by photoelectron photoion coincidence spectroscopy in the 8.20-19.80 eV photon energy range. Vertical ionization energies by EOM-IP-CCSD calculations reproduce the photoelectron spectral features. Composite method calculations and Franck-Condon simulation of the weak, ground-state band yield the adiabatic ionization energy of the most stable vanillin conformer as 8.306(20) eV. The lowest energy dissociative photoionization channels correspond to hydrogen atom, carbon monoxide, and methyl losses, which form the dominant C₈H₇O₃⁺ (m/z 151) and the less intense C₇H₈O₂⁺ (m/z 124) and C₇H₅O₃⁺ (m/z 137) fragment ions in parallel dissociation channels at modeled 0 K appearance energies of 10.13(1), 10.40(3), and 10.58(10) eV, respectively. On the basis of the breakdown diagram, we explore the energetics of sequential methyl and carbon monoxide loss channels, which dominate the fragmentation mechanism at higher photon energies. The 0 K appearance energy for sequential CO loss from the m/z 151 fragment to C₇H₇O₂⁺ (m/z 123) is 12.99(10) eV, and for sequential CH₃ loss from the m/z 123 fragment to C₆H₄O₂⁺ (m/z 108), it is 15.40(20) eV based on the model. Finally, we review the thermochemistry of the bi- and trifunctionalized benzene derivatives guaiacol, hydroxybenzaldehyde, anisaldehyde, and vanillin. On the basis of isodesmic functional group exchange reactions, we propose new enthalpies of formations, among them Δ_fH°_298K(vanillin, g) = -383.5 ± 2.9 kJ mol^-1. These mechanistic insights and ab initio thermochemistry results will support analytical works to study lignin conversion involving vanillin.

Ro-vibrational Distribution of NO+ Dissociated from NO2+ Ions in the a3B2 and b3A2 States: A Slow "Impulsive" Dissociation Example Revealed from Threshold Photoelectron-Photoion Coincidence Imaging

To clarify the contentions about dissociative photoionization mechanism of nitrogen dioxide via the a³B₂ and b³A₂ ionic states, a new threshold photoelectron-photoion coincidence (TPEPICO) velocity imaging has been conducted in the 12.8-14.0 eV energy range at the Hefei Light Source. The fine vibrational-resolved threshold photoelectron spectrum agrees well with the previous measurements. The ro-vibrational distributions of NO⁺, as the unique fragment ion in the dissociation of NO₂⁺ in specific vibronic levels of a³B₂ and b³A₂ states, are derived from the recorded TPEPICO velocity images. A "cold" vibrational (v⁺ = 0) and "hot" rotational population is observed at the a³B₂(0,3,0) and (0,4,0) vibronic levels, while the dissociation of NO₂⁺ in b³A₂(0,0,0) leads to the NO⁺ fragment with both hot vibrational and rotational populations. With the aid of the quantum chemical calculations at the time-dependent B3LYP level, minimum energy paths on the potential energy surfaces of the a³B₂ and b³A₂ states clarify their adiabatic dissociation mechanisms near the thresholds, and this study proposes reliable explanations for the observed internal energy distributions of fragment ions. Additionally, this study provides valuable insights into the application of the classical "impulsive" model on an overall slow dissociation process.

From Energetics to Intracluster Chemistry: Valence Photoionization of Trifluoromethylsulfur Pentafluoride (CF3SF5) by Double Velocity Map Imaging

Trifluoromethylsulfur pentafluoride (CF₃SF₅) was valence threshold photoionized in a double imaging photoelectron photoion coincidence spectrometer using vacuum ultraviolet synchrotron radiation. In the 12.5-16.4 eV photon energy range, CF₃⁺, SF₅⁺, and SF₃⁺ cations were observed in both room temperature (RT) and molecular beam (MB) experiments. Their fractional abundances exhibited differences beyond the sample temperature. Kinetic energy analysis of the fragment ions confirmed the difference in the dissociative photoionization mechanism. In the RT experiment, the CF₃⁺ kinetic energies were extrapolated to a 11.84 ± 0.15 eV threshold, which was used in an ion cycle to determine the enthalpy of formation of CF₃SF₅ as Δ_fH°_298K(CF₃SF₅) = -1593 ± 16 kJ mol^-1. We also updated the enthalpy of formation of the sulfur pentafluoride radical as Δ_fH°_298K(SF₅) = -854 ± 7 kJ mol^-1 and discuss the discrepancy between the CF₃ ionization energy based on the Active Thermochemical Tables and the value anchored to the CF ionization energy. A computed reaction enthalpy network optimization resulted in Δ_fH°_298K(CF₃SF₅) = -1608 ± 20 kJ mol^-1. Both values for Δ_fH°_298K(CF₃SF₅) agree with previous ab initio ones in contrast to the original, experimental determination. SF₃⁺ is formed by F-transfer processes both in the RT and MB experiments. Although the same peaks were observed in both experiments, the lower SF₃⁺ onset energy and the more slowly rising CF₃⁺ kinetic energy release in the MB experiment revealed clustering and intracluster F-transfer reactions upon ionization. The monomer and dimer cation potential energy surfaces were explored to rationalize the observations. In the dimer cation, the observer CF₃SF₅ catalyzes fluorine transfer and promotes CF₄ formation, which ultimately leads to the SF₃⁺ fragment ion.