Oxalic Acid, a Versatile Coformer for Multicomponent Forms with 9-Ethyladenine

Six new multicomponent solids of 9-ethyladenine and oxalic acid have been detected and characterized. The salt screening has been performed by mechanochemical and solvent crystallization processes. Single crystals of the anhydrous salts in 1:1 and 2:1 nucleobase:coformer molar ratio were obtained by solution crystallization and elucidated by single-crystal X-ray analysis. The supramolecular interactions observed in these solids have been studied using density functional theory (DFT) calculations and characterized by the quantum theory of “atoms in molecules” (QTAIM) and the noncovalent interaction plot (NCIPlot) index methods. The energies of the H-bonding networks observed in the solid state of the anhydrous salts in 1:1 and 2:1 nucleobase:coformer are reported, disclosing the strong nature of the charge assisted NH···O hydrogen bonds and also the relative importance of ancillary C–H··O H-bonds.

Modified-amino acid/peptide pyrimidine analogs: synthesis, structural characterization and DFT studies of N-(pyrimidyl)gabapentine and N-(pyrimidyl)baclofen

H-Bonding networks and π–π and halogen bonding interactions in the crystal structures of N-modified amino acid pyrimidine analogs are investigated using DFT calculations and X-ray crystallography analysis.

Selective Metal-Ligand Bond-Breaking Driven by Weak Intermolecular Interactions: From Metamagnetic Mn(III)-Monomer to Hexacyanoferrate(II)-Bridged Metamagnetic Mn2Fe Trimer

Metal-ligand coordination interactions are usually much stronger than weak intermolecular interactions. Nevertheless, here, we show experimental evidence and theoretical confirmation of a very rare example where metal-ligand bonds dissociate in an irreversible way, helped by a large number of weak intermolecular interactions that surpass the energy of the metal-ligand bond. Thus, we describe the design and synthesis of trinuclear Mn₂Fe complex {[Mn(L)(H₂O)]₂Fe(CN)₆},^2- starting from a mononuclear Mn(III)-Schiff base complex: [Mn(L)(H₂O)Cl] (1) and [Fe(CN)₆]^4- anions. This reaction implies the dissociation of Mn(III)-Cl coordination bonds and the formation of Mn(III)-NC bonds with the help of several intermolecular interactions. Here, we present the synthesis, crystal structure, and magnetic characterization of the monomeric Mn(III) complex [Mn(L)(H₂O)Cl] (1) and of compound (H₃O)[Mn(L)(H₂O)₂]{[Mn(L)(H₂O)]₂Fe(CN)₆}·4H₂O (2) (H₂L = 2,2'-((1E,1'E)-(ethane-1,2-diylbis(azaneylylidene))bis(methaneylylidene))bis(4-methoxyphenol)). Complex 1 is a monomer where the Schiff base ligand (L) is coordinated to the four equatorial positions of the Mn(III) center with a H₂O molecule and a Cl^- ion at the axial sites and the monomeric units are assembled by π-π and hydrogen-bonding interactions to build supramolecular dimers. The combination of [Fe(CN)₆]^4- with complex 1 leads to the formation of linear Mn-NC-Fe-CN-Mn trimers where two trans cyano groups of the [Fe(CN)₆]^4- anion replace the labile chloride from the coordination sphere of two [Mn(L)(H₂O)Cl] complexes, giving rise to the linear anionic {[Mn(L)(H₂O)]₂Fe(CN)₆}^2- trimer. This Mn₂Fe trimer crystallizes with an oxonium cation and a mononuclear [Mn(L)(H₂O)₂]⁺ cation, closely related to the precursor neutral complex [Mn(L)(H₂O)Cl]. In compound 2, the Mn₂Fe trimers are assembled by several hydrogen-bonding and π-π interactions to frame an extended structure similar to that of complex 1. Density functional theoretical (DFT) calculations at the PBE1PBE-D3/def2-TZVP level show that the bond dissociation energy (-29.3 kcal/mol) for the Mn(III)-Cl bond is smaller than the summation of all the weak intermolecular interactions (-30.1 kcal/mol). Variable-temperature magnetic studies imply the existence of weak intermolecular antiferromagnetic couplings in both compounds, which can be can cancelled with a critical field of ca. 2.0 and 2.5 T at 2 K for compounds 1 and 2, respectively. The magnetic properties of compound 1 have been fit with a simple S = 2 monomer with g = 1.959, a weak zero-field splitting (|D| = 1.23 cm^-1), and a very weak intermolecular interaction (zJ = -0.03 cm^-1). For compound 2, we have used a model with an S = 2 monomer with ZFS plus an S = 2 antiferromagnetically coupled dimer with g = 2.009, |D| = 1.21 cm^-1, and J = -0.42 cm^-1. The metamagnetic behavior of both compounds is attributed to the weak intermolecular π-π and hydrogen-bonding interactions.

Iridium(III) coordination of N(6) modified adenine derivatives with aminoacid chains

In this manuscript we report the preparation of three N⁶-aminoacid-adenine-derivatives: N-(7H-purin-6-yl)glycine·0.5H₂O (N⁶-GlyAde), N-(7H-purin-6-yl)-β-alanine·1.5H₂O (N⁶-β-AlaAde) and N-(7H-purin-6-yl)-γ-aminobutyric·2H₂O (N⁶-GabaAde) and the synthesis and X-ray characterization of three Ir(III) NAMI-A derivatives (NAMI-A is [imidazoleH][trans-Ru^IIICl₄(DMSO-κS)(imidazole)]) [trans-Ir^IIICl₄(DMSO-κS)(N³-H)-(7H-purin-6-yl)glycine-κN⁹] (1), [trans-Ir^IIICl₄(DMSO-κS)(N³-H)-(7H-purin-6-yl)-β-alanine-κN⁹] hydrate (2) and [trans-Ir^IIICl₄(DMSO-κS)(N³-H)-(7H-purin-6-yl)-γ-aminobutyryl-κN⁹] (3). In all complexes the metal center shows octahedral geometry with coordination to four chlorido ligands and one S coordinated dimethylsulfoxide (DMSO-κS). The coordination sphere of the metal is completed by the modified adenine molecule which is bound via N(9) and protonated at N(3). In two complexes the importance of lone pair (lp)-π interactions involving the adenine ring have been studied using density functional theory (DFT) calculations and the Bader's theory of atoms in molecules. Furthermore, the ability of complexes (1-3) to affect the cell viability was evaluated against three different cancer cell lines: human lung carcinoma cells (A549), human cervical carcinoma cells (HeLa) and human breast cancer cells (MCF7). We have also analyzed their ability to cleave the DNA experimentally and their affinity for two models of DNA has been studied using molecular docking simulations.

Crystal structures of N6-modified-amino acid nucleobase analogs(iii): adenine–valeric acid, adenine–hexanoic acid and adenine–gabapentine

H-bonding networks, anion–π and π–π interactions in the crystal structures of N⁶-modified-amino acid adenine analogs are investigated by means of DFT calculations and X-ray crystallography analysis.

Unconventional DNA-relevant π-stacked hydrogen bonded arrays involving supramolecular guest benzoate dimers and cooperative anion–π/π–π/π–anion contacts in coordination compounds of Co(ii) and Zn(ii) phenanthroline: experimental and theoretical studies

Antiproliferative evaluation and supramolecular assemblies of Co(ii) and Zn(ii) coordination compounds involving cooperative anion–π and unconventional DNA-relevant π-stacked hydrogen bonded arrays.

Complexes of BiCl3 with hydrazone derived ligands: a Möbius-like discrete metal chelate versus a salt-like porous polymeric structure

Reaction of BiCl₃ with hydrazone derived ligands yielded a new Möbius-like discrete metal chelate [Bi(LI)Cl3] and a salt-like porous polymeric structure ([H2LII]2[BiCl5]·EtOH)n.

Recurrent motifs in pharmaceutical cocrystals involving glycolic acid: X-ray characterization, Hirshfeld surface analysis and DFT calculations

Crystallization studies on some pyridinecarboxamides and methylated xanthines with glycolic acid as coformer, were carried out on formation of synthons and their influence on stability and solubility, the energy landscape and stabilization energies.