1
|
Karalė K, Bollmark M, Karalius A, Lopes M, Pérez O, Strömberg R, Tedebark U. Synthesis and stability studies of bicyclo[6.1.0]nonyne scaffolds for automated solid-phase oligonucleotide synthesis. RSC Adv 2024; 14:17406-17412. [PMID: 38813131 PMCID: PMC11134333 DOI: 10.1039/d3ra08732h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 05/09/2024] [Indexed: 05/31/2024] Open
Abstract
Two novel bicyclo[6.1.0]nonyne (BCN) linker derivatives, which can be directly incorporated into oligonucleotide sequences during standard automated solid-phase synthesis, are reported. Stabilities of BCN-carbinol and two BCN-oligonucleotides are evaluated under acidic conditions. In addition, derivatized BCN linkers (non-acidic and acid treated) are evaluated for strain-promoted alkyne-azide cycloaddition (SPAAC).
Collapse
Affiliation(s)
- Kristina Karalė
- Department of Biosciences and Nutrition, Karolinska Institutet Neo 141 57 Huddinge Sweden
- RISE, Department Chemical Process and Pharmaceutical Development Forskargatan 18 SE-15136 Södertälje Sweden
| | - Martin Bollmark
- RISE, Department Chemical Process and Pharmaceutical Development Forskargatan 18 SE-15136 Södertälje Sweden
| | - Antanas Karalius
- RISE, Department Chemical Process and Pharmaceutical Development Forskargatan 18 SE-15136 Södertälje Sweden
| | - Mónica Lopes
- RISE, Department Chemical Process and Pharmaceutical Development Forskargatan 18 SE-15136 Södertälje Sweden
- School of Chemistry, University of Southampton Southampton UK
| | - Oswaldo Pérez
- RISE, Department Chemical Process and Pharmaceutical Development Forskargatan 18 SE-15136 Södertälje Sweden
- Faculty of Pharmaceutical Sciences, University of Iceland Sæmundargata 2 102 Reykjavík Iceland
| | - Roger Strömberg
- Department of Biosciences and Nutrition, Karolinska Institutet Neo 141 57 Huddinge Sweden
- Department of Laboratory Medicine, Karolinska Institutet ANA Futura 141 52 Huddinge Sweden
| | - Ulf Tedebark
- RISE, Department Chemical Process and Pharmaceutical Development Forskargatan 18 SE-15136 Södertälje Sweden
| |
Collapse
|
2
|
Son J, Wu Z, Dou J, Fujita H, Cao PLD, Liu Q, Lindsey JS. Tethered Indoxyl-Glucuronides for Enzymatically Triggered Cross-Linking. Molecules 2023; 28:molecules28104143. [PMID: 37241884 DOI: 10.3390/molecules28104143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 05/14/2023] [Accepted: 05/16/2023] [Indexed: 05/28/2023] Open
Abstract
Indoxyl-glucuronides, upon treatment with β-glucuronidase under physiological conditions, are well known to afford the corresponding indigoid dye via oxidative dimerization. Here, seven indoxyl-glucuronide target compounds have been prepared along with 22 intermediates. Of the target compounds, four contain a conjugatable handle (azido-PEG, hydroxy-PEG, or BCN) attached to the indoxyl moiety, while three are isomers that include a PEG-ethynyl group at the 5-, 6-, or 7-position. All seven target compounds have been examined in indigoid-forming reactions upon treatment with β-glucuronidase from two different sources and rat liver tritosomes. Taken together, the results suggest the utility of tethered indoxyl-glucuronides for use in bioconjugation chemistry with a chromogenic readout under physiological conditions.
Collapse
Affiliation(s)
- Juno Son
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695, USA
| | - Zhiyuan Wu
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695, USA
| | - Jinghuai Dou
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695, USA
| | - Hikaru Fujita
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695, USA
| | - Phuong-Lien Doan Cao
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695, USA
| | - Qihui Liu
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695, USA
| | - Jonathan S Lindsey
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695, USA
| |
Collapse
|
3
|
Wu Z, Dou J, Nguyen KU, Eppley JC, Siwawannapong K, Zhang Y, Lindsey JS. Tailoring the AIE Chromogen 2-(2-Hydroxyphenyl)benzothiazole for Use in Enzyme-Triggered Molecular Brachytherapy. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27248682. [PMID: 36557815 PMCID: PMC9786593 DOI: 10.3390/molecules27248682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 12/01/2022] [Accepted: 12/02/2022] [Indexed: 12/13/2022]
Abstract
A targeted strategy for treating cancer is antibody-directed enzyme prodrug therapy, where the enzyme attached to the antibody causes conversion of an inactive small-molecule prodrug into an active drug. A limitation may be the diffusion of the active drug away from the antibody target site. A related strategy with radiotherapeutics entails enzymatically promoted conversion of a soluble to insoluble radiotherapeutic agent, thereby immobilizing the latter at the target site. Such a molecular brachytherapy has been scarcely investigated. In distinct research, the advent of molecular designs for aggregation-induced emission (AIE) suggests translational use in molecular brachytherapy. Here, several 2-(2-hydroxyphenyl)benzothiazole substrates that readily aggregate in aqueous solution (and afford AIE) were elaborated in this regard. In particular, (1) the 2-(2-hydroxyphenyl) unit was derivatized to bear a pegylated phosphodiester that imparts water solubility yet undergoes enzymatic cleavage, and (2) a p-phenol unit was attached to the benzo moiety to provide a reactive site for final-step iodination (here examined with natural abundance iodide). The pegylated phosphodiester-iodinated benzothiazole undergoes conversion from aqueous-soluble to aqueous-insoluble upon treatment with a phosphatase or phosphodiesterase. The aggregation is essential to molecular brachytherapy, whereas the induced emission of AIE is not essential but provides a convenient basis for research development. Altogether, 21 compounds were synthesized (18 new, 3 known via new routes). Taken together, blending biomedical strategies of enzyme prodrug therapy with materials chemistry concerning substances that undergo AIE may comprise a step forward on the long road toward molecular brachytherapy.
Collapse
|
4
|
Rady T, Mosser M, Nothisen M, Erb S, Dovgan I, Cianférani S, Wagner A, Chaubet G. Bicyclo[6.1.0]nonyne carboxylic acid for the production of stable molecular probes. RSC Adv 2021; 11:36777-36780. [PMID: 35494363 PMCID: PMC9043778 DOI: 10.1039/d1ra07905k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Accepted: 11/02/2021] [Indexed: 11/24/2022] Open
Abstract
Bicyclo[6.1.0]non-4-yn-9-ylmethanol (BCN alcohol) is the most prominent strained-alkyne scaffold in chemical biology. Described herein is the synthesis of an oxidized analogue - BCN acid - whose facile functionalization via amide bond formation yields more stable derivatives than the classically encountered carbamates.
Collapse
Affiliation(s)
- Tony Rady
- Bio-Functional Chemistry (UMR 7199), LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Michel Mosser
- Bio-Functional Chemistry (UMR 7199), LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Marc Nothisen
- Bio-Functional Chemistry (UMR 7199), LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Stephane Erb
- Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), LabEx Medalis, Université de Strasbourg, CNRS, IPHC UMR 7178 67000 Strasbourg France
| | - Igor Dovgan
- Bio-Functional Chemistry (UMR 7199), LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Sarah Cianférani
- Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), LabEx Medalis, Université de Strasbourg, CNRS, IPHC UMR 7178 67000 Strasbourg France
| | - Alain Wagner
- Bio-Functional Chemistry (UMR 7199), LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Guilhem Chaubet
- Bio-Functional Chemistry (UMR 7199), LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| |
Collapse
|
5
|
Chang L, Wang C, Han S, Sun X, Xu F. Chemically Triggered Hydrogel Transformations through Covalent Adaptable Networks and Applications in Cell Culture. ACS Macro Lett 2021; 10:901-906. [PMID: 35549189 DOI: 10.1021/acsmacrolett.1c00276] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this article, we report a "smart" hydrogel system, which can be remodeled into multiple architectures through dynamic covalent adaptable networks. The topological changes in hydrogel structures yield dynamically tunable properties through the reformation of covalent chemical linkages via amine-thiol scrambling, thiol-thiol exchange, decoupling reaction, and disulfide formation. The stiffness of the hydrogels can be regulated via dynamic covalent bonding, with some hydrogels displaying self-healing and shear thinning properties, as demonstrated by rheological measurements. Significantly, the dramatic structural transformations are achieved under neutral aqueous conditions at room temperature. These "smart" hydrogels show good biocompatibility, which can induce cell growth in two-dimensional cell culture and effectively serve as a scaffold for encapsulating and releasing human mesenchymal stem cells in three-dimensional cell culture. Thus, the developed "smart" hydrogel system holds great potential in biomedical applications such as tissue engineering and cell therapy.
Collapse
Affiliation(s)
- Le Chang
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, China
- Bioinspired Engineering and Biomechanics Center (BEBC), Xi’an Jiaotong University, Xi’an 710049, China
| | - Cong Wang
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, China
- Bioinspired Engineering and Biomechanics Center (BEBC), Xi’an Jiaotong University, Xi’an 710049, China
| | - Shuang Han
- Department of Gastroenterology of Honghui Hospital, Xi’an 710054, China
| | - Xiaolong Sun
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, China
| | - Feng Xu
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, China
- Bioinspired Engineering and Biomechanics Center (BEBC), Xi’an Jiaotong University, Xi’an 710049, China
| |
Collapse
|
6
|
Abstract
A growing theme in chemistry is the joining of multiple organic molecular building blocks to create functional molecules. Diverse derivatizable structures—here termed “scaffolds” comprised of “hubs”—provide the foundation for systematic covalent organization of a rich variety of building blocks. This review encompasses 30 tri- or tetra-armed molecular hubs (e.g., triazine, lysine, arenes, dyes) that are used directly or in combination to give linear, cyclic, or branched scaffolds. Each scaffold is categorized by graph theory into one of 31 trees to express the molecular connectivity and overall architecture. Rational chemistry with exacting numbers of derivatizable sites is emphasized. The incorporation of water-solubilization motifs, robust or self-immolative linkers, enzymatically cleavable groups and functional appendages affords immense (and often late-stage) diversification of the scaffolds. Altogether, 107 target molecules are reviewed along with 19 syntheses to illustrate the distinctive chemistries for creating and derivatizing scaffolds. The review covers the history of the field up through 2020, briefly touching on statistically derivatized carriers employed in immunology as counterpoints to the rationally assembled and derivatized scaffolds here, although most citations are from the past two decades. The scaffolds are used widely in fields ranging from pure chemistry to artificial photosynthesis and biomedical sciences.
Collapse
|
7
|
Fujita H, Zhang Y, Wu Z, Lindsey JS. Chromogenic agents built around a multifunctional double-triazine framework for enzymatically triggered cross-linking under physiological conditions. NEW J CHEM 2020. [DOI: 10.1039/c9nj06187h] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A molecular architecture designed for bioconjugation and internal absorption ratiometry undergoes enzymatically triggered cleavage of glucosyl groups and subsequent oxidative dimerization in aqueous solution to yield indigoid-containing scaffolds.
Collapse
Affiliation(s)
- Hikaru Fujita
- Department of Chemistry
- North Carolina State University
- Raleigh
- USA
| | - Yunlong Zhang
- Department of Chemistry
- North Carolina State University
- Raleigh
- USA
| | - Zhiyuan Wu
- Department of Chemistry
- North Carolina State University
- Raleigh
- USA
| | | |
Collapse
|
8
|
Zhang Y, Wu Z, Takashima I, Nguyen KU, Matsumoto N, Lindsey JS. Engineering of an archaeal phosphodiesterase to trigger aggregation-induced emission (AIE) of synthetic substrates. NEW J CHEM 2020. [DOI: 10.1039/d0nj03208e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Aggregation-induced emission (AIE) probes that can be triggered by enzymatic activity are valuable for applications across the life sciences.
Collapse
Affiliation(s)
- Yunlong Zhang
- Department of Chemistry
- North Carolina State University
- Raleigh
- USA
| | - Zhiyuan Wu
- Department of Chemistry
- North Carolina State University
- Raleigh
- USA
| | - Ippei Takashima
- Department of Chemistry
- North Carolina State University
- Raleigh
- USA
| | | | | | | |
Collapse
|