Effect of UV radiation and altitude characteristics on the functional traits and leaf optical properties in Saxifraga hostii at the alpine and montane sites in the Slovenian Alps

Leaf Functional Traits and Their Influencing Factors in Six Typical Vegetation Communities

Leaf functional traits (LFTs) have become a popular topic in ecological research in recent years. Here, we measured eight LFTs, namely leaf area (LA), specific leaf area (SLA), leaf thickness (LT), leaf dry matter content (LDMC), leaf carbon content (LCC), leaf nitrogen content (LNC), leaf phosphorus content (LPC), and leaf potassium content (LKC), in six typical vegetation communities (sclerophyllous evergreen broad-leaved forests, temperate evergreen coniferous forests, cold-temperate evergreen coniferous forests, alpine deciduous broad-leaved shrubs, alpine meadows, and alpine scree sparse vegetation) in the Chayu River Basin, southeastern Qinghai-Tibet Plateau. Our aim was to explore their relationships with evolutionary history and environmental factors by combining the RLQ and the fourth-corner method, and the method of testing phylogenetic signal. The results showed that (i) there were significant differences in the eight LFTs among the six vegetation communities; (ii) the K values of the eight LFTs were less than 1; and (iii) except for LCC, all other LFTs were more sensitive to environmental changes. Among these traits, LA was the most affected by the environmental factors, followed by LNC. It showed that the LFTs in the study were minimally influenced by phylogenetic development but significantly by environmental changes. This study further verified the ecological adaptability of plants to changes in environmental factors and provides a scientific basis for predicting the distribution and diffusion direction of plants under global change conditions.

Comparative chloroplast genomes: insights into the identification and phylogeny of rapid radiation genus Rhodiola

Rhodiola L. is a genus exhibiting rapid radiation and represents a typical case for studying plastid gene adaptation in species that spread from high altitudes to low altitudes. In this study, 23 samples of 18 Rhodiola species were collected from the Qinghai-Tibetan Plateau and five scattered alpine areas, and the plastid genomes (plastomes) of these species were sequenced, annotated, and compared between high-altitude and widely distributed groups. The plastomes of Rhodiola were found to be highly conserved in terms of gene size, content, and order but highly variable in several lineage-specific features, such as codon usage bias, IR boundary shifting, and distinct repeat sequence structures binding to SSRs. Codon usage in the genes of photosystem II exhibited an obvious preference, reflecting significant environmental adaptation pressures. In this study, three repeat regions compounded with trinucleotide and mononucleotide repeats were found for the first time in R. forrestii, R. himalensis, and R. yunnanensis. High-variability regions such as ndhF, ycf1, trnH-psbA, and rpoC1-rpoB were screened, laying the foundation for the precise identification of these species. The phylogenetic analysis revealed the occurrence of cyto-nuclear discordance, likely originating from the frequent interspecific hybridization events observed within Rhodiola species during rapid radiation. Dioecious and hermaphrodite species can be broadly categorized into two subclades, probably they have different environmental adaptation strategies in response to climate change. In addition, the phylogenetic tree supported the monophyly of R. forrestii and R. yunnanensis, which compose R. Sect. Pseudorhodiola. In conclusion, plastome data enrich the genetic information available for the Rhodiola genus and may provide insight into species migration events during climate change.

Alchemilla monticola Opiz. Functional Traits Respond to Diverse Alpine Environmental Conditions in Karavanke, Slovenia

Alpine plants are exposed to demanding environmental conditions, such as high ultraviolet (UV) and photosynthetic radiation, extreme temperatures, drought, and nutrient deficiencies. Alpine plants adapt and acclimate to harsh conditions, developing several strategies, including biochemical, physiological, and optical responses. However, alpine plants’ survival strategies are hardly researched due to time-consuming and complex experimental conditions, which are supported by scarce studies. Our study focused on the functional traits of the alpine plant Alchemilla monticola Opiz (hairy lady’s mantle) growing at two different altitudes (1500, 2000 m a.s.l.) and two different UV exposures per altitude. Near-ambient (UV) and reduced (UV-) UV radiations were provided by using two sorts of UV absorbing filters; temperatures were monitored hourly. The experimental plots were located at Tegoška Gora, Karavanke, Slovenia. Functional traits: physiological, biochemical, and optical characteristics were recorded three times during the growing season. A. monticola showed high maximum photochemical efficiency at both altitudes throughout the season, which confirms good adaptation and acclimatization of the plant. Furthermore, significantly higher maximum photochemical efficiency at the subalpine altitude coincided with significantly higher UV absorbing compounds (UV AC) contents at the subalpine compared to the montane altitude in August. A. monticola manifested high UV AC contents throughout the season, with significantly increased synthesis of UV AC contents in the subalpine conditions in August and September. The stomatal conductance rate increased with altitude and was correlated mostly to a lower temperature. A. monticola leaves did not transmit any UV spectrum, which corresponded to high total UV AC contents. The leaf transmittance of the photosynthetic spectrum increased at the subalpine altitude, while the transmittance of the green and yellow spectra increased under the reduced UV radiation in the autumn. A. monticola’s high photosynthetic spectrum transmittance at the subalpine altitude in the autumn might therefore be due to subalpine harsh environmental conditions, as well as plant ontogenetical phase.

Response of sweet pepper autofluorescence against solar radiation

Shades are adjusted in sweet pepper cultivation, based on solar exposure levels. Pyranometers and photosensitive films have recently been introduced to smart agriculture. However, there are no means of observing biological responses to solar exposure. In this study, we hypothesized that solar exposure levels affect the visible autofluorescence of sweet pepper under 365 nm illumination. To test this hypothesis, we cultivated sweet pepper plants under two exposure conditions, low (half of the normal) and high (the normal). Fluorescence photography (365 nm illumination) revealed that dark-fluorescent peppers only arise when cultivated under high-exposure conditions (0.7-fold decline at emission of 390 nm for high-exposure conditions). Microscopic and spectroscopic observations showed that blue autofluorescence was accompanied by an accumulation of UVB pigments (1.2-factor increase in the absorbance at 300 nm) and epidermal development (1.3-fold thicker cell wall). This study suggests that the autofluorescence of sweet pepper can possibly be used to understand the response of crop to solar radiation at a fruit level in horticulture.

Systematic analysis and expression profiles of TCP gene family in Tartary buckwheat (Fagopyrum tataricum (L.) Gaertn.) revealed the potential function of FtTCP15 and FtTCP18 in response to abiotic stress

Background

As transcription factors, the TCP genes are considered to be promising targets for crop enhancement for their responses to abiotic stresses. However, information on the systematic characterization and functional expression profiles under abiotic stress of TCPs in Tartary buckwheat (Fagopyrum tataricum (L.) Gaertn.) is limited.

Results

In this study, we identified 26 FtTCPs and named them according to their position on the chromosomes. Phylogenetic tree, gene structure, duplication events, and cis-acting elements were further studied and syntenic analysis was conducted to explore the bioinformatic traits of the FtTCP gene family. Subsequently, 12 FtTCP genes were selected for expression analysis under cold, dark, heat, salt, UV, and waterlogging (WL) treatments by qRT-PCR. The spatio-temporal specificity, correlation analysis of gene expression levels and interaction network prediction revealed the potential function of FtTCP15 and FtTCP18 in response to abiotic stresses. Moreover, subcellular localization confirmed that FtTCP15 and FtTCP18 localized in the nucleus function as transcription factors.

Conclusions

In this research, 26 TCP genes were identified in Tartary buckwheat, and their structures and functions have been systematically explored. Our results reveal that the FtTCP15 and FtTCP18 have special cis-elements in response to abiotic stress and conserved nature in evolution, indicating they could be promising candidates for further functional verification under multiple abiotic stresses.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12864-022-08618-1.

Exploring the diversity of andean berries from northern Peru based on molecular analyses

More than 12,000 species have been listed under the category of berries, and most of them belong to the orders Ericales and Rosales. Recent phylogenetic studies using molecular data have revealed disagreements with morphological approaches mainly due to diverse floral arrangements, which has proven to be a problem when recognizing species. Therefore, the use of multilocus sequence data is essential to establish robust species boundaries. Although berries are common in Andean cloud forests, diversity of these taxa has not been extensively evaluated in the current context of DNA-based techniques. In this regard, this study characterized morphologically and constructed multilocus phylogenies using four molecular markers, two chloroplast markers (matK and rbcL) and two nuclear markers (ITS and GBSSI-2). Specimens did not show diagnostic features to delimit species of berries. A total of 125 DNA-barcodes of andean berries were newly generated for the four molecular markers. The multilocus phylogenies constructed from these markers allowed the identification of 24 species grouped into the order Ericales (Cavendishia = 1, Clethra = 2, Disterigma = 2, Gaultheria = 4, Thibaudia = 4, Vaccinium = 3) and Rosales (Rubus = 8), incorporating into the Peruvian flora four new records (Disterigma ecuadorense, Disterigma synanthum, Vaccinium meridionale and Rubus glabratus) and revealing the genus Rubus as the most diverse group of berries in the Amazonas region. The results of this study showed congruence in all the multilocus phylogenies, with internal transcribed spacer (ITS) showing the best resolution to distinguish the species. These species were found in coniferous forests, dry and humid forests, rocky slopes, and grasslands at 2,506–3,019 masl from Amazonas region. The integration of morphological and DNA-based methods is recommended to understand the diversity of berries along the Peruvian Andean cloud forest.

Abstract in Quechua language

Qhawarqan astawan chunka iskayniyuq waranqa especiekuna bayasmanta huch’uy mit’a maypichus hatun rak’i chayaqi ordenkunata Ericaleswan Rosaleswan. Chayraqpi Khuski filogeneticamanta rurachiy allincharqan chanikuna molecularkuna willarqan ayñi rikunawanta morfologicokunamanta, qaylla llapan rantichay t’ika tiktutaywan ñawray, ima kay kaqta qhawacgirqan kay huk champay pachaman riqsiypa especiekunamanta. Hina kaqtintaq, chanikuna qatikipaykunamanta multilocus hat’alliy tiksipmi takyachiypaq saywakuna sinchikuna especiekunamanta. Pana bayaskuna kanku allatinkuna sach’a-sach’api phuyusqa anti runap, ñawran manan karqan achka kamaykuy kunan pacha allwiyaraykupi takyasqakuna ADN. Chayrayku, Noqanchispa taqwi allincharqan huk filogenia multilocus, rarachikupúnmi tawa molecular marcadorkuna, caspa iskay markadorkunawan cloroplastomanta (matK, rbcL) iskay markadorkunawan nuclearkunamanta (ITS, GBSSI-2). Kaykunawan filogeniamanta huniqamuran kikinchay iskay chunka tawayoq especies ima tantaqamuran q'anchis generospi (Cavendishia=1, Clethra=2, Disterigma=2, Gaultheria=4, Thibaudia=4, Vaccinium=3, Rubus=8), kaykunata huñuyqamuranta piruwanu llacha kamay tawa musuq quillqakamachikuta (Disterigma ecuadorense, Disterigma synanthum, Vaccinium meridionale, Rubus glabratus). Nocaykuq lluqsisqan kuwirinti rikuchirurqan llapankuna filogeniaspi multilocusmanta, kaspa espaciador transcrito interno (ITS) pi rikuchina kutuwi mihur rantichay riqsiypaq especiekunata.

Abstract in Awajun language

Dekanauwai juú weantug 12000 sag nagkaikiut, júna nejég tente ainawai nuintushkam kuashtai Ericales nuigtu Rosales weantui. Molecularesjai takasmaug juki filogeneticos augtus yamá dekai antugnaiñasmauwa nuna Morfologicosjai disa umikmaug, juka waignawai kuashag yagkunum, juwai dekaata tamanum kuashat utugchata ama nunuka. Nunui asamtai multilocus takasmauwa nujai dekanui wajukut ainawa pipish tumaig aidaush. Tujashkam kuashtai tentee nejég ainaug ikam naig yujagkim amuamua nunuig, wajupá kuashtakit tusajig ashi dekapasjig ADNjain dischamui. Nuni tamaugmak, ii augtusag duka takasé filogenia multilocus dekamua nujai, takasji ipák usumat marcadores molecularesjai, jimag marcadores cloroplastosjai (matK nuigtu rbcL) nuigtu jimag marcadores nuclearesjai (ITS nuigtu GBSSI-2). Juu filogenias dekaji 24 sag nagkaikiut tuwaka 7 generosnug tuwaka awa nunu (Cavendishia=1, Clethra=2, Disterigma=2, Gaultheria=4, Thibaudia=4, Vaccinium=3, Rubus=8), juui dekanai yamajam ipák usumat ajag perunum awanunu (Disterigma ecuadorense, Disterigma synanthum, Vaccinium meridionale nuigtu Rubus glabratus).