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Zhuang H, Shi W, Zhao G, Li Y. Regulating and controlling the stepwise ESDPT channel of BP(OH) 2DCEt 2 using the strategy of solvent polarity and external electric field. Phys Chem Chem Phys 2024; 26:12016-12026. [PMID: 38576357 DOI: 10.1039/d4cp00989d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/06/2024]
Abstract
Excited state double proton transfer (ESDPT) has attracted great scientific interest because of its excellent luminescent properties. However, the complex process of ESDPT has plagued theoretical and experimental scientists for a long time and has become a hot issue. In this work, the ESDPT process of 2,2'-bipyridine-3,3'-diol-5,5'-dicarboxylic acid ethyl ester (BP(OH)2DCEt2) is systematically studied and the regulation of the ESDPT process is further realized. The potential energy curves indicate that BP(OH)2DCEt2 shows the characteristics of stepwise ESDPT in different polar solvents. The increase in solvent polarity will be beneficial to the stepwise ESDPT reaction. Regrettably, it is not possible to distinguish the specific stepwise transfer path of the BP(OH)2DCEt2 molecule due to the symmetry of the potential energy surface along the diagonal. On this basis, we proposed a method to control and regulate the stepwise ESDPT path using an external electric field. The results show that the increase of external electric field intensity is favorable to stepwise ESDPT. It is interesting to note that applying an external electric field in a specific direction will effectively distinguish stepwise ESDPT reaction paths. Therefore, this work not only helps to understand the mechanism of ESDPT, but also contributes to regulation and design of new luminescent materials with excellent luminescent properties.
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Affiliation(s)
- Hongbin Zhuang
- School of Physics, Liaoning University, Shenyang 110036, P. R. China.
| | - Wei Shi
- School of Physics, Liaoning University, Shenyang 110036, P. R. China.
| | - Guijie Zhao
- School of Physics, Liaoning University, Shenyang 110036, P. R. China.
| | - Yongqing Li
- School of Physics, Liaoning University, Shenyang 110036, P. R. China.
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Siddique F, Anwaar A, Bashir M, Nadeem S, Rawat R, Eyupoglu V, Afzal S, Bibi M, Bin Jardan YA, Bourhia M. Revisiting methotrexate and phototrexate Zinc15 library-based derivatives using deep learning in-silico drug design approach. Front Chem 2024; 12:1380266. [PMID: 38576849 PMCID: PMC10991842 DOI: 10.3389/fchem.2024.1380266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 03/05/2024] [Indexed: 04/06/2024] Open
Abstract
Introduction: Cancer is the second most prevalent cause of mortality in the world, despite the availability of several medications for cancer treatment. Therefore, the cancer research community emphasized on computational techniques to speed up the discovery of novel anticancer drugs. Methods: In the current study, QSAR-based virtual screening was performed on the Zinc15 compound library (271 derivatives of methotrexate (MTX) and phototrexate (PTX)) to predict their inhibitory activity against dihydrofolate reductase (DHFR), a potential anticancer drug target. The deep learning-based ADMET parameters were employed to generate a 2D QSAR model using the multiple linear regression (MPL) methods with Leave-one-out cross-validated (LOO-CV) Q2 and correlation coefficient R2 values as high as 0.77 and 0.81, respectively. Results: From the QSAR model and virtual screening analysis, the top hits (09, 27, 41, 68, 74, 85, 99, 180) exhibited pIC50 ranging from 5.85 to 7.20 with a minimum binding score of -11.6 to -11.0 kcal/mol and were subjected to further investigation. The ADMET attributes using the message-passing neural network (MPNN) model demonstrated the potential of selected hits as an oral medication based on lipophilic profile Log P (0.19-2.69) and bioavailability (76.30% to 78.46%). The clinical toxicity score was 31.24% to 35.30%, with the least toxicity score (8.30%) observed with compound 180. The DFT calculations were carried out to determine the stability, physicochemical parameters and chemical reactivity of selected compounds. The docking results were further validated by 100 ns molecular dynamic simulation analysis. Conclusion: The promising lead compounds found endorsed compared to standard reference drugs MTX and PTX that are best for anticancer activity and can lead to novel therapies after experimental validations. Furthermore, it is suggested to unveil the inhibitory potential of identified hits via in-vitro and in-vivo approaches.
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Affiliation(s)
- Farhan Siddique
- School of Pharmaceutical Science and Technology, Tianjin University, Tianjin, China
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Bahauddin Zakariya University, Multan, Pakistan
| | - Ahmar Anwaar
- Faculty of Pharmacy, Bahauddin Zakariya University, Multan, Pakistan
| | - Maryam Bashir
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Bahauddin Zakariya University, Multan, Pakistan
- Southern Punjab Institute of Health Sciences, Multan, Pakistan
| | - Sumaira Nadeem
- Department of Pharmacy, The Women University, Multan, Pakistan
| | - Ravi Rawat
- School of Health Sciences & Technology, UPES University, Dehradun, India
| | - Volkan Eyupoglu
- Department of Chemistry, Cankırı Karatekin University, Cankırı, Türkiye
| | - Samina Afzal
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Bahauddin Zakariya University, Multan, Pakistan
| | - Mehvish Bibi
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Bahauddin Zakariya University, Multan, Pakistan
| | - Yousef A. Bin Jardan
- Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Mohammed Bourhia
- Laboratory of Biotechnology and Natural Resources Valorization, Faculty of Sciences, Ibn Zohr University, Agadir, Morocco
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Shimray SA, Ningthoujam A, Khaidem DKS, Chipem FAS. Theoretical studies on the photo protective mechanism of curcuminoids. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 305:123449. [PMID: 37774584 DOI: 10.1016/j.saa.2023.123449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/16/2023] [Accepted: 09/20/2023] [Indexed: 10/01/2023]
Abstract
In this work, the deactivation pathways of curcuminoids after photoexcitation was studied by employing density functional theory to explore their UVA radiation screening capacity. A comprehensive computational characterization of the excited-state processes of curcumin, demethoxycurcumin, and bis-demethoxycurcumin was done. The molecules exist in diketo and enol forms which are in equilibrium and interconvertible through keto-enol tautomerism. The enolic forms of each of the studied molecules have eight geometric cis-trans isomers as a result of torsion rotation about three different carbon-carbon double bonds across the aliphatic chain. For each geometric isomer, sixteen possible rotamers are found to exist due to rotation about five different carbon-carbon single bond rotations, also across the skeleton of the aliphatic chain. Upon photoexcitation, the studied molecules follow three main pathways of radiationless decay: (a) rotamerism and interconversion between rotamers of comparable energies which are in equilibrium, (b) interconversion between the cis-trans geometrical isomers where an efficient vibrational relaxation path is formed at ∼90° during torsion rotation about carbon-carbon double bond, and (c) excited state intramolecular proton transfer in a single O-H stretching vibration through a cyclic intramolecular hydrogen bonded ring formed at the centre of the molecule giving back the original structure. The absorption and emission spectra of the molecules were also simulated where the theoretically obtained absorption and emission maxima are close to the reported experimental values.
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Affiliation(s)
- Sophy A Shimray
- Department of Chemistry, Manipur University, Canchipur 795 003, India
| | - Amar Ningthoujam
- Department of Chemistry, Manipur University, Canchipur 795 003, India
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Basha AA, Ali Khan FL, Mohamed Imran P, Kubaib A. Valeramide and Halo-phenol in a Non-polar Liquid: DFT Based Characterization and Reactivity, Non-covalent Interaction, and Dielectric Relaxation Studies. Polycycl Aromat Compd 2023. [DOI: 10.1080/10406638.2023.2169475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- A. Aathif Basha
- Department of Physics, Islamiah College (Autonomous) (Affiliated to Thiruvalluvar University, Vellore), Vaniyambadi, Tamilnadu, India
| | - F. Liakath Ali Khan
- Department of Physics, Islamiah College (Autonomous) (Affiliated to Thiruvalluvar University, Vellore), Vaniyambadi, Tamilnadu, India
| | - Predhanekar Mohamed Imran
- Department of Chemistry, Islamiah College (Autonomous) (Affiliated to Thiruvalluvar University, Vellore), Vaniyambadi, Tamilnadu, India
| | - Attar Kubaib
- Department of Chemistry, Islamiah College (Autonomous) (Affiliated to Thiruvalluvar University, Vellore), Vaniyambadi, Tamilnadu, India
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Dielectric relaxation, dipole moment, electronic characterization and non-covalent interaction behavior of valeramide and halo-phenol in non-polar liquid: A density functional theory-based approach. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.121027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Wang Y, Xin C, Zhu L, Sun C. Influence of intermolecular hydrogen bond interaction on fluorescence mechanism for ESIPT characteristic o-Hydroxybenzaldehyde. Chem Phys 2022. [DOI: 10.1016/j.chemphys.2022.111622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Guan Y, Tang Z, Ju L, Zhao J. Solvent polarity‐dependent
ESIPT
behavior for 5‐(benzothiazole‐2‐yl)‐4‐hydroxyisophthalaldehyde fluorophore: A theoretical study. J CHIN CHEM SOC-TAIP 2022. [DOI: 10.1002/jccs.202200093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Yanlong Guan
- Institute of Molecular Sciences and Engineering, Institute of Frontier and Interdisciplinary Science, Shandong University Qingdao China
- School of Science Shenyang Aerospace University Shenyang Liaoning China
| | - Zhe Tang
- Institute of Molecular Sciences and Engineering, Institute of Frontier and Interdisciplinary Science, Shandong University Qingdao China
- State Key Laboratory of Molecular Reaction Dynamics Dalian Institute of Chemical Physics, Chinese Academy of Sciences Dalian Liaoning China
| | - Liping Ju
- School of Science Shenyang Aerospace University Shenyang Liaoning China
| | - Jinfeng Zhao
- Institute of Molecular Sciences and Engineering, Institute of Frontier and Interdisciplinary Science, Shandong University Qingdao China
- State Key Laboratory of Molecular Reaction Dynamics Dalian Institute of Chemical Physics, Chinese Academy of Sciences Dalian Liaoning China
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Theoretical study on the ESIPT processes and fluorescence properties of 2-(1H-Benzimidazol-2-yl)phenol-based derivatives. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130370] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Zhao J, Jin B. Solvent polarity dependent excited state hydrogen bond effects and intramolecular double proton transfer mechanism for 2-hydroxyphenyl-substituted benzo[1,2-d:4,5-d']bisimidazole system. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 250:119394. [PMID: 33422870 DOI: 10.1016/j.saa.2020.119394] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 12/19/2020] [Accepted: 12/24/2020] [Indexed: 06/12/2023]
Abstract
In this work, we probe into the photo-induced excited state hydrogen bonding interactions and excited state proton transfer (ESPT) behaviors for a representative benzo[1,2-d:4,5-d']bisimidazole derivative (i.e., 2-hydroxyphenyl-substituted benzo[1,2-d:4,5-d']bisimidazole (HPBB)) compound. In view of aprotic solvents with different polarities, cyclohexane (CYH), dichloromethane (DCM) and acetonitrile (MeCN) solvents are considered. Analyzing hydrogen-bond geometrical parameters, infrared (IR) vibrational spectra, Mayer bond order and predicting hydrogen bonding energy (E(HB)), we verify dual hydrogen bonds of HPBB are strengthened in S1 state. Particularly, in nonpolar solvent, the enhanced excited state hydrogen bonds become more obvious. The intriguing charge redistribution and frontier molecular orbitals (MOs) reveal hydrogen bonding acceptance ability of acceptor moieties becomes stronger, which plays a crucial role in capturing hydroxyl proton via photoexcitation. To check and explore ESIPT mechanism, we present the solvent polarity dependent asynchronous excited state intramolecular double proton transfer (ESIDPT) mechanism. That is, nonpolar solvent promotes excited state intramolecular single proton transfer (ESISPT) process for HPBB, while polar solvent contributes to ESIDPT behavior with the primary single proton-transfer product in S1 state. This work not only makes a rational attribution to experimental phenomena, but also clarifies detailed excited state behaviors for HPBB and presents regulating ESIPT mechanism via solvent polarity.
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Affiliation(s)
- Jinfeng Zhao
- Institute of Molecular Sciences and Engineering, Institute of Frontier and Interdisciplinary Science, Shandong University, Qingdao 266235, PR China
| | - Bing Jin
- Institute of Molecular Sciences and Engineering, Institute of Frontier and Interdisciplinary Science, Shandong University, Qingdao 266235, PR China.
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Li J, Feng S, Xu L, Feng X. Fluoride anion sensing mechanism of 2‐(quinolin‐2‐yl)‐3‐hydroxy‐4
H
‐chromen‐4‐one chemosensor based on inhibition of excited state intramolecular ultrafast proton transfer. J PHYS ORG CHEM 2020. [DOI: 10.1002/poc.4116] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Junyu Li
- College of Physics and Electronic Engineering Zhengzhou University of Light Industry Zhengzhou China
| | - Shiquan Feng
- College of Physics and Electronic Engineering Zhengzhou University of Light Industry Zhengzhou China
| | - Liancai Xu
- Department of Material and Chemical Engineering Zhengzhou University of Light Industry Zhengzhou China
| | - Xuechao Feng
- College of Physics and Electronic Engineering Zhengzhou University of Light Industry Zhengzhou China
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