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Alotayeq A, Ghannay S, Alhagri IA, Ahmed I, Hammami B, E. A. E. Albadri A, Patel H, Messaoudi S, Kadri A, M. Al-Hazmy S, Aouadi K. Synthesis, optical properties, DNA, β-cyclodextrin interaction, hydrogen isotope sensor and computational study of new enantiopure isoxazolidine derivative (ISoXD). Heliyon 2024; 10:e26341. [PMID: 38404822 PMCID: PMC10884473 DOI: 10.1016/j.heliyon.2024.e26341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 02/12/2024] [Accepted: 02/12/2024] [Indexed: 02/27/2024] Open
Abstract
A novel isoxazolidine derivative (ISoXD) dye was successfully synthesized and comprehensively characterized. In this study, we conducted a thorough examination of its various properties, including optical characteristics, interactions with DNA and β-cyclodextrin (β-CD), molecular docking, molecular dynamic simulation, and density functional theory (DFT) calculations. Our investigation encompassed a systematic analysis of the absorption and emission spectra of ISoXD in diverse solvents. The observed variations in the spectroscopic data were attributed to the specific solvent's capacity to engage in hydrogen bonding interactions. Remarkably, the most pronounced intensities were observed in glycol, which can establish many hydrogen bonds with ISoXD. Furthermore, our study revealed a significant distinction in the fluorescence behavior of ISoXD when subjected to different solvents, particularly between CHCl3 and CDCl3. Moreover, we explored the fluorescence intensity of the ISoXD complex in the presence of various metals, both in ethanol and water. The ISoXD complex exhibited a substantial increase of fluorescence upon interaction with different metal ions. The utilization of DFT calculations allowed us to propose an intramolecular charge transfer (ICT) mechanism as a plausible explanation for this quenching phenomenon. The interaction of ISoXD with DNA and β-CD was studied using absorption spectra. The binding constant (K) and the standard Gibbs free energy change (ΔGo) for the interaction between DNA and β-CD with ISoXD were determined. In docking study, ISoXD exhibited significant docking scores (-6.511) and MM-GBSA binding free energies (-66.27 kcal/mol) within the PARP-1 binding cavity. Its binding pattern closely resembles to the co-crystal ligand veliparib, and during a 100ns MD simulation, ISoXD displayed strong stability and formed robust hydrogen bonds with key amino acids. These findings suggest ISoXD's potential as a PARP-1 inhibitor for further investigation in therapeutic development.
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Affiliation(s)
- Afnan Alotayeq
- Department of Chemistry, College of Science, Qassim University, Buraidah 51452, Saudi Arabia
| | - Siwar Ghannay
- Department of Chemistry, College of Science, Qassim University, Buraidah 51452, Saudi Arabia
| | - Ibrahim A. Alhagri
- Department of Chemistry, College of Science, Qassim University, Buraidah 51452, Saudi Arabia
- Department of Chemistry, Faculty of Sciences, Ibb University, Ibb, Yemen
| | - Iqrar Ahmed
- Department of Pharmaceutical Chemistry, Prof. Ravindra Nikam College of Pharmacy, Gondur, Dhule, 424002, India
- Division of Computer Aided Drug Design, Department of Pharmaceutical Chemistry, R. C. Patel Institute of Pharmaceutical Education and Research, Shirpur, 425405, Maharashtra, India
| | - Bechir Hammami
- Department of Chemistry, College of Science, Qassim University, Buraidah 51452, Saudi Arabia
| | - Abuzar E. A. E. Albadri
- Department of Chemistry, College of Science, Qassim University, Buraidah 51452, Saudi Arabia
| | - Harun Patel
- Division of Computer Aided Drug Design, Department of Pharmaceutical Chemistry, R. C. Patel Institute of Pharmaceutical Education and Research, Shirpur, 425405, Maharashtra, India
| | - Sabri Messaoudi
- Department of Chemistry, College of Science, Qassim University, Buraidah 51452, Saudi Arabia
- Faculty of Sciences of Bizerte, Carthage University, Jarzouna, Bizerte 7021, Tunisia
| | - Adel Kadri
- Faculty of Science of Sfax, Department of Chemistry, University of Sfax, B.P. 1171, 3000 Sfax, Tunisia
- Department of Chemistry, Faculty of Science and Arts of Baljurashi, Al- Baha University, Saudi Arabia
| | - Sadeq M. Al-Hazmy
- Department of Chemistry, College of Science, Qassim University, Buraidah 51452, Saudi Arabia
| | - Kaiss Aouadi
- Department of Chemistry, College of Science, Qassim University, Buraidah 51452, Saudi Arabia
- Department of Chemistry, Laboratory of Heterocyclic Chemistry Natural Product and Reactivity/CHPNR, Faculty of Science of Monastir, University of Monastir, Avenue of the Environment, Monastir, 5019, Tunisia
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Thakur S, Das A, Das T. 1,3-Dipolar cycloaddition of nitrones: synthesis of multisubstituted, diverse range of heterocyclic compounds. NEW J CHEM 2021. [DOI: 10.1039/d1nj02023d] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The 1,3-dipolar cycloaddition reaction of nitrone is one of the most important methods for the synthesis of different sizes of heterocycles which have enormous applications in natural products, biologically active molecules and pharmaceuticals.
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Affiliation(s)
- Seema Thakur
- Department of Chemistry
- NIT Jamshedpur
- Jamshedpur 831014
- India
| | - Arunima Das
- Department of Chemistry
- NIT Jamshedpur
- Jamshedpur 831014
- India
| | - Tapas Das
- Department of Chemistry
- NIT Jamshedpur
- Jamshedpur 831014
- India
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Efremova MM, Molchanov AP, Novikov AS, Starova GL, Muryleva AA, Slita AV, Zarubaev VV. 1,3-Dipolar cycloaddition of N-allyl substituted polycyclic derivatives of isoindole-1,3-dione with nitrones and nitrile oxides: An experimental and theoretical investigation. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131104] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Molchanov AP, Lukina VM, Efremova MM, Muryleva AA, Slita AV, Zarubaev VV. The 1,3-dipolar cycloaddition of adamantine-derived nitrones with maleimides. SYNTHETIC COMMUN 2020. [DOI: 10.1080/00397911.2020.1738494] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Alexander P. Molchanov
- Institute of Chemistry Saint Petersburg State University, St. Petersburg, Russian Federation
| | - Valentina M. Lukina
- Institute of Chemistry Saint Petersburg State University, St. Petersburg, Russian Federation
| | - Mariia M. Efremova
- Institute of Chemistry Saint Petersburg State University, St. Petersburg, Russian Federation
| | - Anna A. Muryleva
- Saint Petersburg Pasteur Institute, St. Petersburg, Russian Federation
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Legnani L, Iannazzo D, Pistone A, Celesti C, Giofrè S, Romeo R, Di Pietro A, Visalli G, Fresta M, Bottino P, Blanco I, Chiacchio MA. Functionalized polyhedral oligosilsesquioxane (POSS) based composites for bone tissue engineering: synthesis, computational and biological studies. RSC Adv 2020; 10:11325-11334. [PMID: 35495324 PMCID: PMC9050444 DOI: 10.1039/d0ra01636e] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Accepted: 03/12/2020] [Indexed: 12/18/2022] Open
Abstract
Functionalized polyhedral oligosilsesquioxanes (POSS) containing an isoxazolidine nucleus have been synthesized by microwave assisted 1,3-dipolar cycloaddition of N-methyl-C-alkoxycarbonyl nitrone 1 with POSS containing olefin moieties. The results of cycloaddition processes were rationalized by computational studies at the DFT level. The covalent conjugation of chitosan with the cycloadduct 3a leads to composite material CS-POSS 7 which was gelified using genipin as cross linking agent. The suitability of the system for bone tissue engineering purposes was evaluated by in vitro drug release studies using ketoprofen as a model drug and cytotoxicity assays performed on human fetal osteoblastic cells. The preliminary biological tests showed the lack of cytotoxicity of the hybrid material and suggest its potential role in bone tissue engineering applications.
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Affiliation(s)
- Laura Legnani
- Dipartimento di Scienze del Farmaco, Università di Catania Viale A. Doria 6 95125 Catania Italy
| | - Daniela Iannazzo
- Dipartimento di Ingegneria, Università di Messina Contrada Di Dio 98166 Messina Italy
| | - Alessandro Pistone
- Dipartimento di Ingegneria, Università di Messina Contrada Di Dio 98166 Messina Italy
| | - Consuelo Celesti
- Dipartimento di Ingegneria, Università di Messina Contrada Di Dio 98166 Messina Italy
| | - Salvatore Giofrè
- Dipartimento di Scienze Chimiche, Biologiche, Farmaceutiche ed Ambientali, Università di Messina Via S.S. Annunziata 98168 Messina Italy
| | - Roberto Romeo
- Dipartimento di Scienze Chimiche, Biologiche, Farmaceutiche ed Ambientali, Università di Messina Via S.S. Annunziata 98168 Messina Italy
| | - Angela Di Pietro
- Dipartimento di Scienze Biomediche, Odontoiatriche e delle Immagini Morfologiche e Funzionali Via Consolare Valeria 1 98100 Messina Italy
| | - Giuseppa Visalli
- Dipartimento di Scienze Biomediche, Odontoiatriche e delle Immagini Morfologiche e Funzionali Via Consolare Valeria 1 98100 Messina Italy
| | - Monica Fresta
- Dipartimento di Scienze del Farmaco, Università di Catania Viale A. Doria 6 95125 Catania Italy
| | - Paola Bottino
- Dipartimento di Scienze del Farmaco, Università di Catania Viale A. Doria 6 95125 Catania Italy
| | - Ignazio Blanco
- Dipartimento di Ingegneria Civile e Architettura, Università di Catania Viale A. Doria 6 95125 Catania Italy
| | - Maria Assunta Chiacchio
- Dipartimento di Scienze del Farmaco, Università di Catania Viale A. Doria 6 95125 Catania Italy
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Das D, Mukherjee P, Das AR. "On water" palladium catalyzed diastereoselective boronic acid addition to structurally diverse cyclopropane nitriles. Org Biomol Chem 2020; 18:8886-8898. [PMID: 33108794 DOI: 10.1039/d0ob00077a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An efficient palladium catalyzed diastereoselective addition of arylboronic acids to complex spirocyclopropyl dinitriles is developed in the presence of a catalytic amount of 4-dodecylbenzenesulphonic acid (DBSA) as a Brønsted acid surfactant in aqueous media. The protocol is also found to be highly effective when different types of nitrile compounds and organo-boron compounds are used. The overall reaction has been found to be very cost efficient since it requires low catalyst loading, mild thermal energy and short reaction time. Wide substrate scope, operational simplicity, good to excellent product yield, and use of green solvents make the reaction a practical route to transform nitrile into a keto functionality in biorelevant heterocyclic scaffolds. The scale-up synthesis of the target scaffolds can also be achieved with ease which also signifies the practicability of this protocol.
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Affiliation(s)
- Dwaipayan Das
- Department of Chemistry, University of Calcutta 92, A. P. C. Road, Kolkata-700009, India.
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