1
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Fu B, Zhang DH. Accurate fundamental invariant-neural network representation of ab initio potential energy surfaces. Natl Sci Rev 2023; 10:nwad321. [PMID: 38274241 PMCID: PMC10808953 DOI: 10.1093/nsr/nwad321] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2023] [Revised: 11/01/2023] [Accepted: 11/02/2023] [Indexed: 01/27/2024] Open
Abstract
Highly accurate potential energy surfaces are critically important for chemical reaction dynamics. The large number of degrees of freedom and the intricate symmetry adaption pose a big challenge to accurately representing potential energy surfaces (PESs) for polyatomic reactions. Recently, our group has made substantial progress in this direction by developing the fundamental invariant-neural network (FI-NN) approach. Here, we review these advances, demonstrating that the FI-NN approach can represent highly accurate, global, full-dimensional PESs for reactive systems with even more than 10 atoms. These multi-channel reactions typically involve many intermediates, transition states, and products. The complexity and ruggedness of this potential energy landscape present even greater challenges for full-dimensional PES representation. These PESs exhibit a high level of complexity, molecular size, and accuracy of fit. Dynamics simulations based on these PESs have unveiled intriguing and novel reaction mechanisms, providing deep insights into the intricate dynamics involved in combustion, atmospheric, and organic chemistry.
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Affiliation(s)
- Bina Fu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- Hefei National Laboratory, Hefei 230088, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Dong H Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- Hefei National Laboratory, Hefei 230088, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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2
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Song H, Guo H. Theoretical Insights into the Dynamics of Gas-Phase Bimolecular Reactions with Submerged Barriers. ACS PHYSICAL CHEMISTRY AU 2023; 3:406-418. [PMID: 37780541 PMCID: PMC10540288 DOI: 10.1021/acsphyschemau.3c00009] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 06/02/2023] [Accepted: 06/06/2023] [Indexed: 10/03/2023]
Abstract
Much attention has been paid to the dynamics of both activated gas-phase bimolecular reactions, which feature monotonically increasing integral cross sections and Arrhenius kinetics, and their barrierless capture counterparts, which manifest monotonically decreasing integral cross sections and negative temperature dependence of the rate coefficients. In this Perspective, we focus on the dynamics of gas-phase bimolecular reactions with submerged barriers, which often involve radicals or ions and are prevalent in combustion, atmospheric chemistry, astrochemistry, and plasma chemistry. The temperature dependence of the rate coefficients for such reactions is often non-Arrhenius and complex, and the corresponding dynamics may also be quite different from those with significant barriers or those completely dominated by capture. Recent experimental and theoretical studies of such reactions, particularly at relatively low temperatures or collision energies, have revealed interesting dynamical behaviors, which are discussed here. The new knowledge enriches our understanding of the dynamics of these unusual reactions.
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Affiliation(s)
- Hongwei Song
- State
Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science
and Technology, Chinese Academy of Sciences, Wuhan 430071, China
| | - Hua Guo
- Department
of Chemistry and Chemical Biology, University
of New Mexico, Albuquerque, New Mexico 87131, United States
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3
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Zhang Y, Lin Q, Jiang B. Atomistic neural network representations for chemical dynamics simulations of molecular, condensed phase, and interfacial systems: Efficiency, representability, and generalization. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Yaolong Zhang
- Department of Chemical Physics, School of Chemistry and Materials Science, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes University of Science and Technology of China Hefei Anhui China
| | - Qidong Lin
- Department of Chemical Physics, School of Chemistry and Materials Science, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes University of Science and Technology of China Hefei Anhui China
| | - Bin Jiang
- Department of Chemical Physics, School of Chemistry and Materials Science, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes University of Science and Technology of China Hefei Anhui China
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4
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Chen Q, Hu X, Xie D. Collaborative control of branching ratio in the O +
HO
2
→
OH
+
O
2
reaction via vibrational and rotational excitation. J CHIN CHEM SOC-TAIP 2022. [DOI: 10.1002/jccs.202200404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Qixin Chen
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry, School of Chemistry and Chemical Engineering Nanjing University Nanjing China
| | - Xixi Hu
- Kuang Yaming Honors School, Institute for Brain Sciences Nanjing University Nanjing China
| | - Daiqian Xie
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry, School of Chemistry and Chemical Engineering Nanjing University Nanjing China
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5
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Szűcs T, Czakó G. Benchmark ab initio potential energy surface mapping of the F + CH 3NH 2 reaction. Phys Chem Chem Phys 2022; 24:20249-20257. [PMID: 35975600 DOI: 10.1039/d2cp03006c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This electronic structure study reveals four exothermic and two endothermic reaction pathways of the F + CH3NH2 system: the barrierless hydrogen abstraction from the methyl/amino group (HF + CH2NH2/CH3NH), amino/methyl substitution (NH2 + CH3F and CH3 + NH2F) and hydrogen substitution from the two functional groups (H + CH2FNH2/CH3NHF). The benchmark classical and adiabatic energies are obtained using a high-accuracy composite ab initio approach, where the gold-standard explicitly-correlated coupled cluster method (CCSD(T)-F12b) is applied with the correlation-consistent polarized valence quintuple-zeta F12 basis set (cc-pV5Z-F12) and further additive energy contributions. Considering indispensable post-(T) correlation, core correlation, scalar relativistic, spin-orbit and harmonic zero-point energy corrections, the obtained global minimum of the potential energy surface is the post-reaction CH2NH2⋯HF complex in the product channel. Although each substitution pathway has a high barrier, the energies of amino-substitution and methyl-hydrogen-substitution products are below the energy of the reactants, as well as the submerged-barrier hydrogen-abstraction pathways.
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Affiliation(s)
- Tímea Szűcs
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
| | - Gábor Czakó
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
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6
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Chen Q, Zhang S, Hu X, Xie D, Guo H. Reaction Pathway Control via Reactant Vibrational Excitation and Impact on Product Vibrational Distributions: The O + HO 2 → OH + O 2 Atmospheric Reaction. J Phys Chem Lett 2022; 13:1872-1878. [PMID: 35175051 DOI: 10.1021/acs.jpclett.2c00053] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Chemical reactions often have multiple pathways, the control of which is of fundamental and practical importance. In this Letter, we examine the dynamics of the O + HO2 → OH + O2 reaction, which plays an important role in atmospheric chemistry, using quasi-classical trajectories on a recently developed full-dimensional potential energy surface (PES). This reaction has two pathways leading to the same products: the H abstraction pathway (Oa + HObOc → OaH + ObOc) and the O abstraction pathway (Oa + HObOc → ObH + OaOc). Under thermal conditions, the reaction is dominated by the latter channel, which is barrierless, leading to vibrational excitation of the O2 product. However, we demonstrate that excitation of the HO2 reactant in its O-H (v1) vibrational mode results in dramatic switching of the reaction pathway to the activated H abstraction channel, which leads to a highly excited OH product vibrational state distribution. The implications of such dynamical effects in the atmospheric chemistry are discussed.
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Affiliation(s)
- Qixin Chen
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Shuwen Zhang
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Xixi Hu
- Kuang Yaming Honors School, Institute for Brain Sciences, Nanjing University, Nanjing 210023, China
| | - Daiqian Xie
- Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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7
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Espinosa-Garcia J. Global potential energy surface and product pair-correlated distributions for the F( 2P) + SiH 4 reaction - comparison with experiments. Phys Chem Chem Phys 2022; 24:2887-2900. [PMID: 35060978 DOI: 10.1039/d1cp04561j] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this paper we study the gas-phase hydrogen abstraction reaction between fluorine atoms and silane in a three-step process: potential energy surface, kinetics and dynamics. Firstly, we developed for the first time an analytical full-dimensional surface, named PES-2021, using high-level explicitly-correlated ab initio data as the input. PES-2021 represents a continuous and smooth potential with analytical gradients and includes intuitive concepts (stretching and bending nuclear motions). Based on the PES-2021 quasi-classical trajectory (QCT) calculations were performed to analyse the kinetics and dynamics. Secondly, in the kinetics study at room temperature we observed a very fast reaction with a rate constant of 3.90 × 10-10 cm3 molecule-1 s-1, reproducing the scarce experimental evidence. Finally, the third step is the dynamics study, which was performed under two different conditions, a temperature of 77 K and a collision energy of 2.5 kcal mol-1, for direct comparison with experiments. In the first case, we found the largest fraction, 44%, deposited as HF(v) vibration, where the most populated states were HF(v = 2, 3), both results reproducing the experimental evidence. The largest discrepancy with the experiment was found in the HF(j) rotational distribution, where hotter distributions were found, this discrepancy being associated with limitations of the QCT method. The second case, E = 2.5 kcal mol-1, was a state-to-state correlated study and, therefore, more difficult. The theory overestimates (again) and consequently underestimates, respectively, the rotational and vibrational fractions of the HF(v,j) product as compared with experiments. While experimentally the SiH3 product appears excited only in the umbrella mode, ν2 = 0-5, correlated with the HF(v) co-product vibrational excited in v = 3 and 4, theoretically a wider vibrational distribution is found in both products, and these distributions have, obviously, an influence on the product correlated speed distributions. However, the product correlated angular distribution is well reproduced. In general, these results allowed us to test the capacity of PES-2021 + QCT tools to simulate the experimental evidence, revealing that agreement is better when average properties are compared, making the comparison worse when state-to-state properties are compared. Different causes of the theory/experiment discrepancies were analysed, and it was found that they are due, mainly, to limitations of the QCT method.
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Affiliation(s)
- J Espinosa-Garcia
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain.
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8
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Mode Specificity Dynamics of the Prototypical Multi-Channel H+CH 3OH Reaction on a Globally Accurate Potential Energy Surface. CHINESE J CHEM PHYS 2022. [DOI: 10.1063/1674-0068/cjcp2201018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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9
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10
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Product Vibrational State Distributions of the F CH 3OH Reaction on a Full-Dimensional Accurate Potential Energy Surface. CHINESE J CHEM PHYS 2022. [DOI: 10.1063/1674-0068/cjcp2111252] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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11
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Espinosa-Garcia J, Corchado JC. Theoretical study of the Cl( 2P) + SiH 4 reaction: global potential energy surface and product pair-correlated distributions. Comparison with experiment. Phys Chem Chem Phys 2021; 23:21065-21077. [PMID: 34523628 DOI: 10.1039/d1cp02563e] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
For the theoretical study of the title reaction, an analytical full-dimensional potential energy surface named PES-2021 was developed for the first time, by fitting high-level explicitly-correlated ab initio data. This reaction presented high exothermicity, (298 K) = -11.6 kcal mol-1, reproducing the experimental evidence; it is a barrierless reaction and no intermediate complexes were found. PES-2021 is a continuous and smooth potential energy surface, it includes intuitive concepts in its development and fitting, such as stretching and bending nuclear motions, and it presents analytical first energy derivatives. Based on PES-2021, kinetics and dynamics studies were carried out using quasi-classical trajectory calculations. In the kinetics study, over the temperature range 300-450 K, we observed that rate constants were practically independent of temperature, with an almost zero activation energy, as compared to 0.0 and -0.48 kcal mol-1 experimentally reported. In this kinetics study the role of the spin-orbit effect on reactivity was analysed. In the dynamics study, different product pair-correlated dynamics properties were compared with the only experimental evidence: product energy partition, product vibrational distribution, product angular distribution and product speed distribution. We observed two mechanisms of reaction, a stripping mechanism associated with large impact parameters and forward scattering, and an indirect mechanism associated with sideways-backward scattering related with "nearly-trapped" trajectories due to the product rotation. In general, theoretical results reasonably simulate the experimental measurements when they consider some rotational and vibrational constraints as well as binning techniques to mimic a quantum-mechanical behaviour. Although the agreement is not quantitative, the present results shed light on the mechanism of this difficult polyatomic reactive system.
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Affiliation(s)
- J Espinosa-Garcia
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain.
| | - J C Corchado
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain.
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12
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Xin R, Xiang H, Tian L, Li Y, Song H. Kinetic and Dynamic Studies of the F( 2P) + ND 3 → DF + ND 2 Reaction. J Phys Chem A 2021; 125:8025-8032. [PMID: 34478289 DOI: 10.1021/acs.jpca.1c06515] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The fast F reaction with NH3 poses a big challenge to experimental studies because of secondary chemical and collisional reactions. The quasi-classical trajectory method is utilized to investigate the mode specificity, product energy disposal, and temperature dependence of the thermal rate coefficient of F + ND3 → DF + ND2 on a recently developed potential energy surface. The effect of isotopic substitution is explored by comparing the F + ND3 reaction with the F + NH3 reaction. The computed results permit a better understanding of the F + ammonia reaction. The DF vibrational state has a Λ-type distribution, in accordance with the experimental measurement by the fast flow reactor technique. The product ND2 is dominantly populated in the ground state, and a considerable amount of ND2 is produced in the fundamental states of the bending mode. The similar vibrational state distributions of HF and NH2 in the F + NH3 reaction indicate a weak isotopic substitution effect on the product energy disposal. Exciting the umbrella mode of ND3 suppresses the reaction at low energies below 5 kcal mol-1, in sharp contrast to the observation in the F + NH3 reaction. These dynamical behaviors can be partially explained by the sudden vector projection model. In addition, the thermal rate coefficient of F + ND3 shows no temperature dependence in the range between 150 and 2000 K. There exists an inverse kinetic isotope effect at temperatures from 150 to 1500 K.
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Affiliation(s)
- Rong Xin
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Haipan Xiang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Li Tian
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.,College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Yong Li
- College of Physical Science and Technology, Huazhong Normal University, Wuhan 430079, China
| | - Hongwei Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
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13
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Zhao B, Han S, Malbon CL, Manthe U, Yarkony DR, Guo H. Full-dimensional quantum stereodynamics of the non-adiabatic quenching of OH(A 2Σ +) by H 2. Nat Chem 2021; 13:909-915. [PMID: 34373597 PMCID: PMC8440216 DOI: 10.1038/s41557-021-00730-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 05/11/2021] [Indexed: 11/16/2022]
Abstract
The Born–Oppenheimer approximation, assuming separable nuclear and electronic motion, is widely adopted for characterizing chemical reactions in a single electronic state. However, the breakdown of the Born–Oppenheimer approximation is omnipresent in chemistry, and a detailed understanding of the non-adiabatic dynamics is still incomplete. Here we investigate the non-adiabatic quenching of electronically excited OH(A2Σ+) molecules by H2 molecules using full-dimensional quantum dynamics calculations for zero total nuclear angular momentum using a high-quality diabatic-potential-energy matrix. Good agreement with experimental observations is found for the OH(X2Π) ro-vibrational distribution, and the non-adiabatic dynamics are shown to be controlled by stereodynamics, namely the relative orientation of the two reactants. The uncovering of a major (in)elastic channel, neglected in a previous analysis but confirmed by a recent experiment, resolves a long-standing experiment–theory disagreement concerning the branching ratio of the two electronic quenching channels. ![]()
The breakdown of the Born–Oppenheimer approximation is omnipresent in chemistry and detailed understanding of non-adiabatic dynamics is still incomplete. Now, the non-adiabatic quenching of electronically excited OH(A2Σ+) molecules by H2 has been investigated using full-dimensional quantum dynamics calculations and a high-quality diabatic-potential-energy matrix, providing insight into the branching ratio of the two electronic quenching channels.
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Affiliation(s)
- Bin Zhao
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, NM, USA. .,Theoretische Chemie, Fakultät für Chemie, Universität Bielefeld, Bielefeld, Germany.
| | - Shanyu Han
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, NM, USA
| | | | - Uwe Manthe
- Theoretische Chemie, Fakultät für Chemie, Universität Bielefeld, Bielefeld, Germany.
| | - David R Yarkony
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, USA.
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, NM, USA.
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14
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Li C, Liu Q, Zhang L, Li Y, Jiang B. Ring polymer molecular dynamics in gas-surface reactions: tests on initial sampling and potential energy landscape. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1941367] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Chen Li
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, People’s Republic of China
| | - Qinghua Liu
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, People’s Republic of China
| | - Liang Zhang
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, People’s Republic of China
| | - Yongle Li
- Department of Physics, International Center of Quantum and Molecular Structures and Shanghai Key Laboratory of High Temperature Superconductors, Shanghai University, Shanghai, People’s Republic of China
| | - Bin Jiang
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, People’s Republic of China
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15
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Lin Q, Zhang L, Zhang Y, Jiang B. Searching Configurations in Uncertainty Space: Active Learning of High-Dimensional Neural Network Reactive Potentials. J Chem Theory Comput 2021; 17:2691-2701. [PMID: 33904718 DOI: 10.1021/acs.jctc.1c00166] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Neural network (NN) potential energy surfaces (PESs) have been widely used in atomistic simulations with ab initio accuracy. While constructing NN PESs, their training data points are often sampled by molecular dynamics trajectories. This strategy can be however inefficient for reactive systems involving rare events. Here, we develop an uncertainty-driven active learning strategy to automatically and efficiently generate high-dimensional NN-based reactive potentials, taking a gas-surface reaction as an example. The difference between two independent NN models is used as a simple and differentiable uncertainty metric, allowing us to quickly search in the uncertainty space and place new samples at which the PES is less reliable. By interfacing this algorithm with the first-principles simulation package, we demonstrate that a globally accurate NN potential of the H2 + Ag(111) system can be constructed with merely ∼150 data points. This PES can be further refined to describe H2 dissociation on Ag(100) by adding ∼130 more configurations on this facet. The entire process is completely automatic and self-terminated once the relative error criterion is fulfilled. Impressively, data points sampled by this uncertainty-driven strategy are substantially fewer than by the traditional trajectory-based sampling. The final NN PES not only converges well the quantum dissociation probability of the molecule but also well-reproduces the phonon properties of the substrate and is capable of describing surface temperature effects. These results show the potential of this active learning approach in developing high-dimensional NN reactive potentials in gas and condensed phases.
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Affiliation(s)
- Qidong Lin
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Liang Zhang
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Yaolong Zhang
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Bin Jiang
- Hefei National Laboratory for Physical Science at the Microscale, Department of Chemical Physics, Key Laboratory of Surface and Interface Chemistry and Energy Catalysis of Anhui Higher Education Institutes, University of Science and Technology of China, Hefei, Anhui 230026, China
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16
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Qin J, Li J. An accurate full-dimensional potential energy surface for the reaction OH + SO → H + SO2. Phys Chem Chem Phys 2021; 23:487-497. [DOI: 10.1039/d0cp05206j] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An accurate full-dimensional PES for the OH + SO ↔ H + SO2 reaction is developed by the permutation invariant polynomial-neural network approach.
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Affiliation(s)
- Jie Qin
- School of Chemistry and Chemical Engineering & Chongqing Key Laboratory of Theoretical and Computational Chemistry
- Chongqing University
- Chongqing 401331
- China
| | - Jun Li
- School of Chemistry and Chemical Engineering & Chongqing Key Laboratory of Theoretical and Computational Chemistry
- Chongqing University
- Chongqing 401331
- China
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17
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Szűcs T, Czakó G. Benchmark ab initio stationary-point characterization of the complex potential energy surface of the multi-channel Cl + CH 3NH 2 reaction. Phys Chem Chem Phys 2021; 23:10347-10356. [PMID: 33881412 DOI: 10.1039/d0cp06392d] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We characterize the exothermic low/submerged-barrier hydrogen-abstraction (HCl + CH2NH2/CH3NH) as well as, for the first time, the endothermic high-barrier amino-substitution (CH3Cl + NH2), methyl-substitution (NH2Cl + CH3), and hydrogen-substitution (CH2ClNH2/CH3NHCl + H) pathways of the Cl + CH3NH2 reaction using an accurate composite ab initio approach. The computations reveal a CH3NH2Cl complex in the entrance channel, nine transition states corresponding to different abstractions, Walden-inversion substitution, and configuration-retaining front-side attack substitution pathways, as well as nine post-reaction complexes. The global minima of the electronic and vibrationally adiabatic potential energy surfaces correspond to the pre-reaction CH3NH2Cl and post-reaction CH2NH2HCl complexes, respectively. The benchmark composite energies of the stationary points are obtained by considering basis-set effects up to the correlation-consistent polarized valence quadruple-zeta basis augmented with diffuse functions (aug-cc-pVQZ) using the explicitly-correlated coupled-cluster singles, doubles, and perturbative triples CCSD(T)-F12b method, post-(T) correlation up to CCSDT(Q) including full triples and perturbative quadruples, core correlation, and scalar relativistic and spin-orbit effects, as well as harmonic zero-point energy corrections.
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Affiliation(s)
- Tímea Szűcs
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
| | - Gábor Czakó
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
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18
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Li J, Zhao B, Xie D, Guo H. Advances and New Challenges to Bimolecular Reaction Dynamics Theory. J Phys Chem Lett 2020; 11:8844-8860. [PMID: 32970441 DOI: 10.1021/acs.jpclett.0c02501] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Dynamics of bimolecular reactions in the gas phase are of foundational importance in combustion, atmospheric chemistry, interstellar chemistry, and plasma chemistry. These collision-induced chemical transformations are a sensitive probe of the underlying potential energy surface(s). Despite tremendous progress in past decades, our understanding is still not complete. In this Perspective, we survey the recent advances in theoretical characterization of bimolecular reaction dynamics, stimulated by new experimental observations, and identify key new challenges.
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Affiliation(s)
- Jun Li
- School of Chemistry and Chemical Engineering & Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing 401331, China
| | - Bin Zhao
- Theoretische Chemie, Fakultät für Chemie, Universität Bielefeld, Universitätsstraße 25, D-33615 Bielefeld, Germany
| | - Daiqian Xie
- Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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Li J, Varga Z, Truhlar DG, Guo H. Many-Body Permutationally Invariant Polynomial Neural Network Potential Energy Surface for N4. J Chem Theory Comput 2020; 16:4822-4832. [DOI: 10.1021/acs.jctc.0c00430] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jun Li
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
- School of Chemistry and Chemical Engineering, Chongqing University, Chongqing 400030, China
| | - Zoltan Varga
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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Lu D, Behler J, Li J. Accurate Global Potential Energy Surfaces for the H + CH3OH Reaction by Neural Network Fitting with Permutation Invariance. J Phys Chem A 2020; 124:5737-5745. [DOI: 10.1021/acs.jpca.0c04182] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Dandan Lu
- School of Chemistry and Chemical Engineering & Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing 401331, China
- Institut für Physikalische Chemie, Theoretische Chemie, Universität Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
| | - Jörg Behler
- Institut für Physikalische Chemie, Theoretische Chemie, Universität Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
| | - Jun Li
- School of Chemistry and Chemical Engineering & Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing 401331, China
- Institut für Physikalische Chemie, Theoretische Chemie, Universität Göttingen, Tammannstrasse 6, 37077 Göttingen, Germany
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