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For: Riera M, Lambros E, Nguyen TT, Götz AW, Paesani F. Low-order many-body interactions determine the local structure of liquid water. Chem Sci 2019;10:8211-8218. [PMID: 32133122 PMCID: PMC6927411 DOI: 10.1039/c9sc03291f] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 07/21/2019] [Indexed: 12/30/2022]  Open
Number Cited by Other Article(s)
1
Torre MF, Amadeo A, Cassone G, Tommasini M, Mráziková K, Saija F. Water Dimer under Electric Fields: An Ab Initio Investigation up to Quantum Accuracy. J Phys Chem A 2024;128:5490-5499. [PMID: 38976361 DOI: 10.1021/acs.jpca.4c01553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/10/2024]
2
Zhai Y, Rashmi R, Palos E, Paesani F. Many-body interactions and deep neural network potentials for water. J Chem Phys 2024;160:144501. [PMID: 38587225 DOI: 10.1063/5.0203682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 03/23/2024] [Indexed: 04/09/2024]  Open
3
Feldman YMY, Hirshberg B. Quadratic scaling bosonic path integral molecular dynamics. J Chem Phys 2023;159:154107. [PMID: 37855315 DOI: 10.1063/5.0173749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Accepted: 09/15/2023] [Indexed: 10/20/2023]  Open
4
Herman KM, Stone AJ, Xantheas SS. Accurate Calculation of Many-Body Energies in Water Clusters Using a Classical Geometry-Dependent Induction Model. J Chem Theory Comput 2023;19:6805-6815. [PMID: 37703063 DOI: 10.1021/acs.jctc.3c00575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/14/2023]
5
Low K, Coote ML, Izgorodina EI. Accurate Prediction of Three-Body Intermolecular Interactions via Electron Deformation Density-Based Machine Learning. J Chem Theory Comput 2023;19:1466-1475. [PMID: 36787280 DOI: 10.1021/acs.jctc.2c00984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/15/2023]
6
Zhai Y, Caruso A, Bore SL, Luo Z, Paesani F. A "short blanket" dilemma for a state-of-the-art neural network potential for water: Reproducing experimental properties or the physics of the underlying many-body interactions? J Chem Phys 2023;158:084111. [PMID: 36859071 DOI: 10.1063/5.0142843] [Citation(s) in RCA: 18] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
7
Liu J, Lan J, He X. Toward High-level Machine Learning Potential for Water Based on Quantum Fragmentation and Neural Networks. J Phys Chem A 2022;126:3926-3936. [PMID: 35679610 DOI: 10.1021/acs.jpca.2c00601] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
8
Palos E, Lambros E, Swee S, Hu J, Dasgupta S, Paesani F. Assessing the Interplay between Functional-Driven and Density-Driven Errors in DFT Models of Water. J Chem Theory Comput 2022;18:3410-3426. [PMID: 35506889 DOI: 10.1021/acs.jctc.2c00050] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
9
Palos E, Lambros E, Dasgupta S, Paesani F. Density Functional Theory of Water with the Machine-Learned DM21 Functional. J Chem Phys 2022;156:161103. [DOI: 10.1063/5.0090862] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
10
Nadeem SMS. A volumetric study of ionic interactions of ammonium sulfate in water and aqueous DMF at different temperatures. CHEMICAL PAPERS 2022. [DOI: 10.1007/s11696-022-02172-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
11
Gallo P, Bachler J, Bove LE, Böhmer R, Camisasca G, Coronas LE, Corti HR, de Almeida Ribeiro I, de Koning M, Franzese G, Fuentes-Landete V, Gainaru C, Loerting T, de Oca JMM, Poole PH, Rovere M, Sciortino F, Tonauer CM, Appignanesi GA. Advances in the study of supercooled water. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2021;44:143. [PMID: 34825973 DOI: 10.1140/epje/s10189-021-00139-1] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 10/17/2021] [Indexed: 06/13/2023]
12
Dasgupta S, Lambros E, Perdew JP, Paesani F. Elevating density functional theory to chemical accuracy for water simulations through a density-corrected many-body formalism. Nat Commun 2021;12:6359. [PMID: 34737311 PMCID: PMC8569147 DOI: 10.1038/s41467-021-26618-9] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Accepted: 10/08/2021] [Indexed: 11/09/2022]  Open
13
Bull-Vulpe EF, Riera M, Götz AW, Paesani F. MB-Fit: Software infrastructure for data-driven many-body potential energy functions. J Chem Phys 2021;155:124801. [PMID: 34598567 DOI: 10.1063/5.0063198] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
14
Lambros E, Dasgupta S, Palos E, Swee S, Hu J, Paesani F. General Many-Body Framework for Data-Driven Potentials with Arbitrary Quantum Mechanical Accuracy: Water as a Case Study. J Chem Theory Comput 2021;17:5635-5650. [PMID: 34370954 DOI: 10.1021/acs.jctc.1c00541] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
15
Noguere G, Scotta JP, Xu S, Farhi E, Ollivier J, Calzavarra Y, Rols S, Koza M, Marquez Damian JI. Temperature-dependent dynamic structure factors for liquid water inferred from inelastic neutron scattering measurements. J Chem Phys 2021;155:024502. [PMID: 34266266 DOI: 10.1063/5.0055779] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Eriksen JJ. Decomposed Mean-Field Simulations of Local Properties in Condensed Phases. J Phys Chem Lett 2021;12:6048-6055. [PMID: 34165982 DOI: 10.1021/acs.jpclett.1c01375] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
17
Lambros E, Hu J, Paesani F. Assessing the Accuracy of the SCAN Functional for Water through a Many-Body Analysis of the Adiabatic Connection Formula. J Chem Theory Comput 2021;17:3739-3749. [DOI: 10.1021/acs.jctc.1c00141] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
18
Cruzeiro VWD, Lambros E, Riera M, Roy R, Paesani F, Götz AW. Highly Accurate Many-Body Potentials for Simulations of N2O5 in Water: Benchmarks, Development, and Validation. J Chem Theory Comput 2021;17:3931-3945. [PMID: 34029079 DOI: 10.1021/acs.jctc.1c00069] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
19
Lambros E, Lipparini F, Cisneros GA, Paesani F. A Many-Body, Fully Polarizable Approach to QM/MM Simulations. J Chem Theory Comput 2020;16:7462-7472. [PMID: 33213149 PMCID: PMC8131112 DOI: 10.1021/acs.jctc.0c00932] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
20
Riera M, Hirales A, Ghosh R, Paesani F. Data-Driven Many-Body Models with Chemical Accuracy for CH4/H2O Mixtures. J Phys Chem B 2020;124:11207-11221. [DOI: 10.1021/acs.jpcb.0c08728] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
21
Liquid water contains the building blocks of diverse ice phases. Nat Commun 2020;11:5757. [PMID: 33188195 PMCID: PMC7666157 DOI: 10.1038/s41467-020-19606-y] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Accepted: 10/23/2020] [Indexed: 11/24/2022]  Open
22
Dick S, Fernandez-Serra M. Machine learning accurate exchange and correlation functionals of the electronic density. Nat Commun 2020;11:3509. [PMID: 32665540 PMCID: PMC7360771 DOI: 10.1038/s41467-020-17265-7] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2019] [Accepted: 06/17/2020] [Indexed: 11/23/2022]  Open
23
Li C, Swanson JMJ. Understanding and Tracking the Excess Proton in Ab Initio Simulations; Insights from IR Spectra. J Phys Chem B 2020;124:5696-5708. [PMID: 32515957 PMCID: PMC7448536 DOI: 10.1021/acs.jpcb.0c03615] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
24
Duignan TT, Mundy CJ, Schenter GK, Zhao XS. Method for Accurately Predicting Solvation Structure. J Chem Theory Comput 2020;16:5401-5409. [DOI: 10.1021/acs.jctc.0c00300] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
25
Carlson S, Brünig FN, Loche P, Bonthuis DJ, Netz RR. Exploring the Absorption Spectrum of Simulated Water from MHz to Infrared. J Phys Chem A 2020;124:5599-5605. [DOI: 10.1021/acs.jpca.0c04063] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
26
Self-interaction error overbinds water clusters but cancels in structural energy differences. Proc Natl Acad Sci U S A 2020;117:11283-11288. [PMID: 32393631 DOI: 10.1073/pnas.1921258117] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
27
Ishiyama T. Existence of weakly interacting OH bond at air/water interface. J Chem Phys 2020;152:134703. [DOI: 10.1063/1.5144308] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
28
Egan CK, Bizzarro BB, Riera M, Paesani F. Nature of Alkali Ion–Water Interactions: Insights from Many-Body Representations and Density Functional Theory. II. J Chem Theory Comput 2020;16:3055-3072. [DOI: 10.1021/acs.jctc.0c00082] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
29
Riera M, Yeh EP, Paesani F. Data-Driven Many-Body Models for Molecular Fluids: CO2/H2O Mixtures as a Case Study. J Chem Theory Comput 2020;16:2246-2257. [DOI: 10.1021/acs.jctc.9b01175] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
30
Roy VP, Kubarych KJ. A simple lattice Monte Carlo simulation to model interfacial and crowded water rearrangements. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2019.110653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
31
Jana S, Constantin LA, Samal P. Accurate Water Properties from an Efficient ab Initio Method. J Chem Theory Comput 2020;16:974-987. [DOI: 10.1021/acs.jctc.9b01018] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
32
Melcr J, Piquemal JP. Accurate Biomolecular Simulations Account for Electronic Polarization. Front Mol Biosci 2019;6:143. [PMID: 31867342 PMCID: PMC6904368 DOI: 10.3389/fmolb.2019.00143] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 11/20/2019] [Indexed: 11/29/2022]  Open
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