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Digregorio P, Rorai C, Pagonabarraga I, Toschi F. Coexistence of Defect Morphologies in Three-Dimensional Active Nematics. PHYSICAL REVIEW LETTERS 2024; 132:258301. [PMID: 38996247 DOI: 10.1103/physrevlett.132.258301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 03/06/2024] [Accepted: 05/21/2024] [Indexed: 07/14/2024]
Abstract
We establish how active stress globally affects the morphology of disclination lines of a three-dimensional active nematic liquid crystal under chaotic flow. Thanks to a defect detection algorithm based on the local nematic orientation, we show that activity selects a crossover length scale in between the size of small defect loops and that of long and tangled defect lines of fractal dimension 2. This length scale crossover is consistent with the scaling of the average separation between defects as a function of activity. Moreover, on the basis of numerical simulation in a 3D periodic geometry, we show the presence of a network of regular defect loops, contractible onto the 3-torus, always coexisting with wrapping defect lines. While the length of regular defects scales linearly with the emerging active length scale, it verifies an inverse quadratic dependence for wrapping defects. The shorter the active length scale, the more the defect lines wrap around the periodic boundaries, resulting in extremely long and buckled structures.
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Híjar H, Majumdar A. Particle-based and continuum models for confined nematics in two dimensions. SOFT MATTER 2024; 20:3755-3770. [PMID: 38629234 DOI: 10.1039/d3sm01684f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2024]
Abstract
We use the particle-based stochastic multi-particle collision dynamics (N-MPCD) algorithm to simulate confined nematic liquid crystals in regular two-dimensional polygons such as squares, pentagons and hexagons. We consider a range of values of the nematicities, U, and simulation domain sizes, R, that canvass nano-sized polygons to micron-sized polygons. We use closure arguments to define mappings between the N-MPCD parameters and the parameters in the continuum deterministic Landau-de Gennes framework. The averaged N-MPCD configurations agree with those predicted by Landau-de Gennes theory, at least for large polygons. We study relaxation dynamics or the non-equilibrium dynamics of confined nematics in polygons, in the N-MPCD framework, and the kinetic traps bear strong resemblance to the unstable saddle points in the Landau-de Gennes framework. Finally, we study nematic defect dynamics inside the polygons in the N-MPCD framework and the finite-size effects slow down the defects and attract them to polygon vertices. Our work is a comprehensive comparison between particle-based stochastic N-MPCD methods and deterministic/continuum Landau-de Gennes methods, and this comparison is essential for new-age multiscale theories.
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Affiliation(s)
| | - Apala Majumdar
- Department of Mathematics and Statistics, University of Strathclyde, UK
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Macías-Durán J, Duarte-Alaniz V, Híjar H. Active nematic liquid crystals simulated by particle-based mesoscopic methods. SOFT MATTER 2023; 19:8052-8069. [PMID: 37700612 DOI: 10.1039/d3sm00481c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/14/2023]
Abstract
Two Multi-particle collision dynamics algorithms that simulate nematic liquid crystals are generalised to reproduce active behaviour. One of the algorithms is due to Shendruk and Yeomans and is based on particles that carry an orientation vector ordered by a mean-field energy [T. N. Shendruk and J. M. Yeomans, Soft Matter, 2015, 11, 5101]. In the other algorithm, due to Mandal and Mazza, particles possess an order parameter tensor which evolves according to the Qian-Sheng model of nematohydrodynamics [S. Mandal and M. G. Mazza, Phys. Rev. E, 2019, 99, 063319]. For both methods activity is incorporated through a force proportional to the divergence of the local average order parameter tensor. Both implementations produce disclination curves in the nematic fluid that undergo nucleation and self-annihilation dynamics. Topological defects are found to be consistent with those observed in recent experiments of three-dimensional active nematics. Results permit to compare the length-scales over which the different nematic Multi-particle collision dynamics methods operate. The structure and dynamics of the orientation and flow fields agree with those obtained recently in numerical studies of continuum three-dimensional active nematics. Overall, our results open the opportunity to use mesoscopic particle-based approaches to study active liquid crystals in situations such as nonequilibrium states driven by flow or colloidal particles in active anisotropic solvents.
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Affiliation(s)
- Jesús Macías-Durán
- La Salle University Mexico, Benjamin Franklin 45, 06140, Mexico City, Mexico.
| | | | - Humberto Híjar
- La Salle University Mexico, Benjamin Franklin 45, 06140, Mexico City, Mexico.
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Kinoshita Y, Uchida N. Flow patterns and defect dynamics of active nematic liquid crystals under an electric field. Phys Rev E 2023; 108:014605. [PMID: 37583184 DOI: 10.1103/physreve.108.014605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 06/19/2023] [Indexed: 08/17/2023]
Abstract
The effects of an electric field on the flow patterns and defect dynamics of two-dimensional active nematic liquid crystals are numerically investigated. We found that field-induced director reorientation causes anisotropic active turbulence characterized by enhanced flow perpendicular to the electric field. The average flow speed and its anisotropy are maximized at an intermediate field strength. Topological defects in the anisotropic active turbulence are localized and show characteristic dynamics with simultaneous creation of two pairs of defects. A laning state characterized by stripe domains with alternating flow directions is found at a larger field strength near the transition to the uniformly aligned state. We obtained periodic oscillations between the laning state and active turbulence, which resembles an experimental observation of active nematics subject to anisotropic friction.
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Affiliation(s)
- Yutaka Kinoshita
- Department of Physics, Tohoku University, Sendai 980-8578, Japan
| | - Nariya Uchida
- Department of Physics, Tohoku University, Sendai 980-8578, Japan
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Kralj N, Ravnik M, Kos Ž. Defect Line Coarsening and Refinement in Active Nematics. PHYSICAL REVIEW LETTERS 2023; 130:128101. [PMID: 37027875 DOI: 10.1103/physrevlett.130.128101] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 02/09/2023] [Accepted: 02/15/2023] [Indexed: 06/19/2023]
Abstract
Active matter is naturally out of equilibrium which results in the emergence of diverse dynamic steady states, including the omnipresent chaotic state known as the active turbulence. However, much less is known how active systems dynamically depart out of these configurations, such as get excited or damped to a different dynamic steady state. In this Letter, we demonstrate the coarsening and refinement dynamics of topological defect lines in three-dimensional active nematic turbulence. Specifically, using theory and numerical modeling, we are able to predict the evolution of the active defect density away from the steady state due to time-dependent activity or viscoelastic material properties, establishing a single length scale phenomenological description of defect line coarsening and refinement in a three-dimensional active nematic. The approach is first applied to growth dynamics of a single active defect loop, and then to a full three-dimensional active defect network. More generally, this Letter provides insight into the general coarsening phenomena between dynamical regimes in 3D active matter, with a possible analogy in other physical systems.
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Affiliation(s)
- Nika Kralj
- Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, 1000 Ljubljana, Slovenia
| | - Miha Ravnik
- Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, 1000 Ljubljana, Slovenia
- Condensed Matter Physics Department, J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
| | - Žiga Kos
- Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, 1000 Ljubljana, Slovenia
- Condensed Matter Physics Department, J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
- International Institute for Sustainability with Knotted Chiral Meta Matter, Hiroshima University, Higashihiroshima 739-8511, Japan
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Saghatchi R, Yildiz M, Doostmohammadi A. Nematic order condensation and topological defects in inertial active nematics. Phys Rev E 2022; 106:014705. [PMID: 35974636 DOI: 10.1103/physreve.106.014705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2021] [Accepted: 06/08/2022] [Indexed: 06/15/2023]
Abstract
Living materials at different length scales manifest active nematic features such as orientational order, nematic topological defects, and active nematic turbulence. Using numerical simulations we investigate the impact of fluid inertia on the collective pattern formation in active nematics. We show that an incremental increase in inertial effects due to reduced viscosity results in gradual melting of nematic order with an increase in topological defect density before a discontinuous transition to a vortex-condensate state. The emergent vortex-condensate state at low enough viscosities coincides with nematic order condensation within the giant vortices and the drop in the density of topological defects. We further show flow field around topological defects is substantially affected by inertial effects. Moreover, we demonstrate the strong dependence of the kinetic energy spectrum on the inertial effects, recover the Kolmogorov scaling within the vortex-condensate phase, but find no evidence of universal scaling at higher viscosities. The findings reveal complexities in active nematic turbulence and emphasize the important cross-talk between active and inertial effects in setting flow and orientational organization of active particles.
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Affiliation(s)
- Roozbeh Saghatchi
- Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla 34956 Istanbul, Turkey; Integrated Manufacturing Technology Research & Application Center, Sabanci University, Tuzla 34956 Istanbul, Turkey; and Composite Technologies Center of Excellence, Sabanci University-Kordsa, Pendik 34906 Istanbul, Turkey
| | - Mehmet Yildiz
- Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla 34956 Istanbul, Turkey; Integrated Manufacturing Technology Research & Application Center, Sabanci University, Tuzla 34956 Istanbul, Turkey; and Composite Technologies Center of Excellence, Sabanci University-Kordsa, Pendik 34906 Istanbul, Turkey
| | - Amin Doostmohammadi
- Niels Bohr Institute, University of Copenhagen, Blegdamsvej 17, 2100 Copenhagen, Denmark
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Active transformations of topological structures in light-driven nematic disclination networks. Proc Natl Acad Sci U S A 2022; 119:e2122226119. [PMID: 35639695 DOI: 10.1073/pnas.2122226119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
SignificanceTopological defects are marvels of nature. Understanding their structures is important for their applications in, for example, directed self-assembly, sensing, and photonic devices. There is recent interest in active motion and transformation of topological defects in active nematics. In these nonequilibrium systems, however, the motion and transformation of disclinations are difficult to control, thereby hindering their applications. Here, we propose a surface-patterned system engendering periodic three-dimensional disclinations, which can be excited by light irradiation and undergo a programmable transformation between different topological states. Continuum simulations recapitulating these topological structures characterize the bending, breaking, and relinking events of the disclinations during the nonequilibrium process. Our work provides an alternative dynamic system in which active transformation of topological defects can be engineered.
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Houston AJH, Alexander GP. Defect loops in three-dimensional active nematics as active multipoles. Phys Rev E 2022; 105:L062601. [PMID: 35854622 DOI: 10.1103/physreve.105.l062601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Accepted: 02/09/2022] [Indexed: 06/15/2023]
Abstract
We develop a description of defect loops in three-dimensional active nematics based on a multipole expansion of the far-field director and show how this leads to a self-dynamics dependent on the loop's geometric type. The dipole term leads to active stresses that generate a global self-propulsion for splay and bend loops. The quadrupole moment is nonzero only for nonplanar loops and generates a net "active torque," such that defect loops are both self-motile and self-orienting. Our analysis identifies right- and left-handed twist loops as the only force- and torque-free geometries, suggesting a mechanism for generating an excess of twist loops. Finally, we determine the Stokesian flows created by defect loops and describe qualitatively their hydrodynamics.
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Affiliation(s)
- Alexander J H Houston
- Department of Physics, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Gareth P Alexander
- Department of Physics, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, United Kingdom
- Centre for Complexity Science, Zeeman Building, University of Warwick, Coventry CV4 7AL, United Kingdom
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