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Xiong Y, Li M, Cao Y, Li Z, Chang Y, Zhao X, Qing G. Nanofluidic Device for Detection of Lysine Methylpeptides and Sensing of Lysine Methylation. Anal Chem 2023; 95:7761-7769. [PMID: 37140051 DOI: 10.1021/acs.analchem.3c01074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Protein methylation is the smallest possible yet vitally important post-translational modification (PTM). This small and chemically inert addition in proteins makes the analysis of methylation more challenging, thus calling for an efficient tool for the sake of recognition and detection. Herein, we present a nanofluidic electric sensing device based on a functionalized nanochannel that was constructed by introducing monotriazole-containing p-sulfonatocalix[4]arene (TSC) into a single asymmetric polymeric nanochannel via click chemistry. The device can selectively detect lysine methylpeptides with subpicomole sensitivity, distinguish between different lysine methylation states, and monitor the lysine methylation process by methyltransferase at the peptide level in real time. The introduced TSC molecule, with its confined asymmetric configuration, presents the remarkable ability to selectively bind to lysine methylpeptides, which, coupled with the release of the complexed Cu ions, allows the device to transform the molecular-level recognition to the discernible change in ionic current of the nanofluidic electric device, thus enabling detection. This work could serve as a stepping stone to the development of a new methyltransferase assay and the chemical that specifically targets lysine methylation in PTM proteomics.
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Affiliation(s)
- Yuting Xiong
- Jiangxi Province Key Laboratory of Polymer Micro/Nano Manufacturing and Devices, College of Chemistry and Materials Science, East China University of Technology, Nanchang 330013, P. R. China
| | - Minmin Li
- Jiangxi Province Key Laboratory of Polymer Micro/Nano Manufacturing and Devices, College of Chemistry and Materials Science, East China University of Technology, Nanchang 330013, P. R. China
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
| | - Yuchen Cao
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
| | - Zan Li
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
| | - Yongxin Chang
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
| | - Xinjia Zhao
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
| | - Guangyan Qing
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
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2
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Malakhova M, Gorbunov A, Ozerov N, Korniltsev I, Ermolov K, Bezzubov S, Kovalev V, Vatsouro I. Triazolated calix[4]semitubes: assembling strategies towards long multicalixarene architectures. Org Chem Front 2022. [DOI: 10.1039/d2qo00432a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cone and 1,3-alternate calix[4]arenes bearing pairs of 2-azidoethyl or propargyl groups, and 1,3-alternate calix[4]arenes having four 2-azidoethyl, four propargyl groups or pairs of 2-azidoethyl and silylated propargyl groups were explored...
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3
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Bezzubov S, Ermolov K, Gorbunov A, Kalle P, Lentin I, Latyshev G, Kovalev V, Vatsouro I. Inherently dinuclear iridium(III) meso architectures accessed by cyclometalation of calix[4]arene-based bis(aryltriazoles). Dalton Trans 2021; 50:16765-16769. [PMID: 34761791 DOI: 10.1039/d1dt03579g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Conventional cyclometalation of calix[4]arene bis(aryltriazoles) with iridium(III) chloride hydrate leads to unique meso architectures in which the Ir2Cl2 core is cross-bound by two (C^N)2 ligands, which allows further replacement of the chloride bridges with ancillary ligands while maintaining the dinuclear structures of the complexes having independent or coupled iridium pairs.
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Affiliation(s)
- Stanislav Bezzubov
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninskii pr. 31, 119991 Moscow, Russia.
| | - Kirill Ermolov
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Alexander Gorbunov
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Paulina Kalle
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninskii pr. 31, 119991 Moscow, Russia.
| | - Ivan Lentin
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Gennadij Latyshev
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Vladimir Kovalev
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Ivan Vatsouro
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
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4
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Szyszka Ł, Cmoch P, Górecki M, Ceborska M, Potopnyk MA, Jarosz S. Chiral Molecular Cages Based on Cyclotriveratrylene and Sucrose Units Connected with
p
‐Phenylene Linkers. European J Org Chem 2021. [DOI: 10.1002/ejoc.202001482] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Łukasz Szyszka
- Institute of Organic Chemistry Polish Academy of Sciences M. Kasprzaka 44/52 01-224 Warsaw Poland
| | - Piotr Cmoch
- Institute of Organic Chemistry Polish Academy of Sciences M. Kasprzaka 44/52 01-224 Warsaw Poland
| | - Marcin Górecki
- Institute of Organic Chemistry Polish Academy of Sciences M. Kasprzaka 44/52 01-224 Warsaw Poland
| | - Magdalena Ceborska
- Institute of Physical Chemistry Polish Academy of Sciences M. Kasprzaka 44/52 01-224 Warsaw Poland
| | - Mykhaylo A. Potopnyk
- Institute of Organic Chemistry Polish Academy of Sciences M. Kasprzaka 44/52 01-224 Warsaw Poland
| | - Sławomir Jarosz
- Institute of Organic Chemistry Polish Academy of Sciences M. Kasprzaka 44/52 01-224 Warsaw Poland
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5
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Oguz M, Dogan B, Durdagi S, Bhatti AA, Karakurt S, Yilmaz M. Investigation of supramolecular interaction of quercetin with N, N-dimethylamine-functionalized p-sulfonated calix[4,8]arenes using molecular modeling and their in vitro cytotoxic response towards selected cancer cells. NEW J CHEM 2021. [DOI: 10.1039/d1nj03038h] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Although quercetin is an effective bioactive compound preventing the progress of several human cancers, its impact is reduced due to low bioavailability.
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Affiliation(s)
- Mehmet Oguz
- Selcuk University, Department of Chemistry, 42075 Konya, Turkey
- Department of Advanced Material and Nanotechnology, Selcuk University, 42031 Konya, Turkey
| | - Berna Dogan
- Department of Biochemistry, School of Medicine, Bahcesehir University, Istanbul, Turkey
- Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahcesehir University, Istanbul, Turkey
| | - Serdar Durdagi
- Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahcesehir University, Istanbul, Turkey
| | - Asif Ali Bhatti
- Department of Chemistry, Government College University Hyderabad, Hyderabad, 71000, Pakistan
| | - Serdar Karakurt
- Selcuk University, Department of Biochemistry, Konya 42075, Turkey
| | - Mustafa Yilmaz
- Selcuk University, Department of Chemistry, 42075 Konya, Turkey
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6
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Gorbunov A, Ozerov N, Malakhova M, Eshtukov A, Cheshkov D, Bezzubov S, Kovalev V, Vatsouro I. Assembling triazolated calix[4]semitubes by means of copper( i)-catalyzed azide–alkyne cycloaddition. Org Chem Front 2021. [DOI: 10.1039/d1qo00636c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Calix[4]arene-based bis(alkynes) and bis(azides) react with each other under thoroughly tuned CuAAC conditions and produce diverse biscalixarene semitube assemblies linked by two triazole units, which are capable of binding transition metal cations.
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Affiliation(s)
- Alexander Gorbunov
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Nikolay Ozerov
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Maria Malakhova
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Artur Eshtukov
- State Research Institute for Chemistry and Technology of Organoelement Compounds
- 105118 Moscow
- Russia
| | - Dmitry Cheshkov
- State Research Institute for Chemistry and Technology of Organoelement Compounds
- 105118 Moscow
- Russia
| | - Stanislav Bezzubov
- Kurnakov Institute of General and Inorganic Chemistry
- Russian Academy of Sciences
- 119991 Moscow
- Russia
| | - Vladimir Kovalev
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Ivan Vatsouro
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
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7
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Gorbunov A, Kuznetsova J, Deltsov I, Molokanova A, Cheshkov D, Bezzubov S, Kovalev V, Vatsouro I. Selective azide–alkyne cycloaddition reactions of azidoalkylated calixarenes. Org Chem Front 2020. [DOI: 10.1039/d0qo00650e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Reaction of calixarene oligo(azides) with alkynes taken in deficiency lead selectively to oligo(triazoles) under Cu(i) catalysis. Same azides react with alkynes intramolecularly under copper-free conditions forming 1,5-substituted triazole bridges.
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Affiliation(s)
- Alexander Gorbunov
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Julia Kuznetsova
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Ilya Deltsov
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Anastasia Molokanova
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Dmitry Cheshkov
- State Research Institute for Chemistry and Technology of Organoelement Compounds
- 105118 Moscow
- Russia
| | - Stanislav Bezzubov
- Kurnakov Institute of General and Inorganic Chemistry
- Russian Academy of Sciences
- 119991 Moscow
- Russia
| | - Vladimir Kovalev
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
| | - Ivan Vatsouro
- Department of Chemistry
- M. V. Lomonosov Moscow State University
- 119991 Moscow
- Russia
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