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Mahmood A, Akram T, Chen S, Azam S. From Molecules to Devices: Insights into Electronic and Optical Properties of Pyridine-Derived Compounds Using Density Functional Theory Calculations. J Phys Chem A 2024; 128:1049-1062. [PMID: 38323545 DOI: 10.1021/acs.jpca.3c07585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2024]
Abstract
In this study, we delve into the electronic structure, spectroscopic, and optical properties of five benzo derivatives of pyridine, namely, 5-(4-chlorophenyl)-2-fluoropyridine (1), 2-fluoro-5-(4-fluorophenyl)pyridine (2), 4-(2-fluoropyridin-5-yl)phenol (3), 5-(2,3-dichlorophenyl)-2-fluoropyridine (4), and 5-(5-bromo-2-methoxyphenyl)-2-fluoropyridine (5). Utilizing quantum chemical density functional theory calculations at the B3LYP and Perdew-Burke-Ernzerhof levels of theory combined with the 6-311G(d,p) and 6-311++G(d,p) basis sets, we investigated the electronic and optical characteristics of these compounds. Band structure calculations were conducted for their crystalline structures, revealing a direct band gap varying from 3.018 to 3.558 eV, with the valence band maximum and conduction band minimum located at the G point in the Brillouin zone. The optical properties were analyzed, including the dielectric functions, reflectivity, and refractive index. Notably, reflectivity was found to be minimal in the photon energy range of 0.0-3.0 eV, and the static refractive index, n(0), ranged from 1.55 to 1.70. The research also involved assessing the reactivity of the compounds through calculation of the frontier orbital energy gaps (ΔE), indicating a significant charge transfer and high reactivity. Additionally, we performed frequency analysis to unveil the Fourier-transform infrared spectra of compounds 1-5 at room temperature. Molecular electrostatic potential surfaces of the optimized structures were employed to map the electrophilic and nucleophilic regions of the compounds. This investigation provides a comprehensive understanding of the electronic and optical properties of these pyridine derivatives, shedding light on their potential applications in optoelectronics.
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Affiliation(s)
- Ayyaz Mahmood
- School of Mechanical Engineering, Dongguan University of Technology, Dongguan 523808, China
- School of Life Science and Technology, University of Electronic Science and Technology, Chengdu 610054, China
- School of Art and Design, Guangzhou Panyu Polytechnic, Guangzhou 511483, China
| | - Tayyaba Akram
- Department of Physics, COMSATS Institute of Information Technology, Lahore 54000, Pakistan
| | - Shenggui Chen
- School of Mechanical Engineering, Dongguan University of Technology, Dongguan 523808, China
- School of Art and Design, Guangzhou Panyu Polytechnic, Guangzhou 511483, China
| | - Sikander Azam
- New Technologies─Research Center, University of West Bohemia, Univerzitni 8, 306 14 Pilsen, Czech Republic
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2
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Cometto FP, Arisnabarreta N, Vanta R, Jacquelín DK, Vyas V, Lotsch BV, Paredes-Olivera PA, Patrito EM, Lingenfelder M. Rational Design of 2D Supramolecular Networks Switchable by External Electric Fields. ACS NANO 2024; 18:4287-4296. [PMID: 38259041 PMCID: PMC10851663 DOI: 10.1021/acsnano.3c09775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2023] [Revised: 01/13/2024] [Accepted: 01/17/2024] [Indexed: 01/24/2024]
Abstract
The reversible formation of hydrogen bonds is a ubiquitous mechanism for controlling molecular assembly in biological systems. However, achieving predictable reversibility in artificial two-dimensional (2D) materials remains a significant challenge. Here, we use an external electric field (EEF) at the solid/liquid interface to trigger the switching of H-bond-linked 2D networks using a scanning tunneling microscope. Assisted by density functional theory and molecular dynamics simulations, we systematically vary the molecule-to-molecule interactions, i.e., the hydrogen-bonding strength, as well as the molecule-to-substrate interactions to analyze the EEF switching effect. By tuning the building block's hydrogen-bonding ability (carboxylic acids vs aldehydes) and substrate nature and charge (graphite, graphene/Cu, graphene/SiO2), we induce or freeze the switching properties and control the final polymorphic output in the 2D network. Our results indicate that the switching ability is not inherent to any particular building block but instead relies on a synergistic combination of the relative adsorbate/adsorbate and absorbate/substrate energetic contributions under surface polarization. Furthermore, we describe the dynamics of the switching mechanism based on the rotation of carboxylic groups and proton exchange, which generate the polarizable species that are influenced by the EEF. This work provides insights into the design and control of reversible molecular assembly in 2D materials, with potential applications in a wide range of fields, including sensors and electronics.
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Affiliation(s)
- Fernando P. Cometto
- Max
Planck-EPFL Laboratory for Molecular Nanoscience and IPHYS, EPFL, Lausanne, CH 1015, Switzerland
- Instituto
de Investigaciones en Fisicoquímica de Córdoba (INFIQC),
CONICET, Ciudad Universitaria, Córdoba X5000HUA, Argentina
- Departamento
de Fisicoquímica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba (UNC), Ciudad Universitaria, Córdoba X5000HUA, Argentina
| | - Nicolás Arisnabarreta
- Max
Planck-EPFL Laboratory for Molecular Nanoscience and IPHYS, EPFL, Lausanne, CH 1015, Switzerland
- Instituto
de Investigaciones en Fisicoquímica de Córdoba (INFIQC),
CONICET, Ciudad Universitaria, Córdoba X5000HUA, Argentina
- Departamento
de Fisicoquímica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba (UNC), Ciudad Universitaria, Córdoba X5000HUA, Argentina
| | - Radovan Vanta
- Max
Planck-EPFL Laboratory for Molecular Nanoscience and IPHYS, EPFL, Lausanne, CH 1015, Switzerland
| | - Daniela K. Jacquelín
- Instituto
de Investigaciones en Fisicoquímica de Córdoba (INFIQC),
CONICET, Ciudad Universitaria, Córdoba X5000HUA, Argentina
| | - Vijay Vyas
- Max
Planck Institute for Solid State Research, Stuttgart D-70569, Germany
| | - Bettina V. Lotsch
- Max
Planck Institute for Solid State Research, Stuttgart D-70569, Germany
- Department
of Chemistry, University of Munich (LMU), Munich 81377, Germany
| | - Patricia A. Paredes-Olivera
- Departamento
de Química Teórica y Computacional, Facultad de Ciencias
Químicas, Universidad Nacional de
Córdoba (UNC), Ciudad Universitaria, Córdoba X5000HUA, Argentina
| | - E. Martín Patrito
- Instituto
de Investigaciones en Fisicoquímica de Córdoba (INFIQC),
CONICET, Ciudad Universitaria, Córdoba X5000HUA, Argentina
- Departamento
de Fisicoquímica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba (UNC), Ciudad Universitaria, Córdoba X5000HUA, Argentina
| | - Magalí Lingenfelder
- Max
Planck-EPFL Laboratory for Molecular Nanoscience and IPHYS, EPFL, Lausanne, CH 1015, Switzerland
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Li Z, Li Y, Yin C. Manipulating Molecular Self-Assembly Process at the Solid-Liquid Interface Probed by Scanning Tunneling Microscopy. Polymers (Basel) 2023; 15:4176. [PMID: 37896420 PMCID: PMC10610993 DOI: 10.3390/polym15204176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 10/16/2023] [Accepted: 10/18/2023] [Indexed: 10/29/2023] Open
Abstract
The phenomenon of ordered self-assembly on solid substrates is a topic of interest in both fundamental surface science research and its applications in nanotechnology. The regulation and control of two-dimensional (2D) self-assembled supra-molecular structures on surfaces have been realized through applying external stimuli. By utilizing scanning tunneling microscopy (STM), researchers can investigate the detailed phase transition process of self-assembled monolayers (SAMs), providing insight into the interplay between intermolecular weak interactions and substrate-molecule interactions, which govern the formation of molecular self-assembly. This review will discuss the structural transition of self-assembly probed by STM in response to external stimuli and provide state-of-the-art methods such as tip-induced confinement for the alignment of SAM domains and selective chirality. Finally, we discuss the challenges and opportunities in the field of self-assembly and STM.
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Affiliation(s)
| | - Yanan Li
- School of Chemical Engineering, Anhui University of Science and Technology, Huainan 232001, China;
| | - Chengjie Yin
- School of Chemical Engineering, Anhui University of Science and Technology, Huainan 232001, China;
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Maeda M, Oda K, Hisaki I, Tahara K. Influence of core size on self-assembled molecular networks composed of C3h-symmetric building blocks through hydrogen bonding interactions: structural features and chirality. RSC Adv 2023; 13:29512-29521. [PMID: 37822655 PMCID: PMC10562897 DOI: 10.1039/d3ra05762c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 09/26/2023] [Indexed: 10/13/2023] Open
Abstract
The effect of the core size on the structure and chirality of self-assembled molecular networks was investigated using two aromatic carboxylic acid derivatives with frameworks displaying C3h symmetry, triphenylene derivative H3TTCA and dehydrobenzo[12]annulene (DBA) derivative DBACOOH, each having three carboxy groups per molecule. Scanning tunneling microscopy observations at the 1-heptanoic acid/graphite interface revealed H3TTCA exclusively forming a chiral honeycomb structure, and DBACOOH forming three structures (type I, II, and III structures) depending on its concentration and whether the system is subjected to annealing treatment. Hydrogen bonding interaction patterns and chirality were carefully analyzed based on a modeling study using molecular mechanics simulations. Moreover, DBACOOH forms chiral honeycomb structures through the co-adsorption of guest molecules. Structural diversity observed for DBACOOH is attributed to its relatively large core size, with this feature modulating the balance between molecule-molecule and molecule-substrate interactions.
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Affiliation(s)
- Matsuhiro Maeda
- Department of Applied Chemistry, School of Science and Technology, Meiji University 1-1-1 Higashimita, Tama-ku Kawasaki 214-8571 Japan
| | - Kotoka Oda
- Department of Applied Chemistry, School of Science and Technology, Meiji University 1-1-1 Higashimita, Tama-ku Kawasaki 214-8571 Japan
| | - Ichiro Hisaki
- Division of Chemistry, Graduate School of Engineering Science, Osaka University 1-3 Machikaneyama Toyonaka Osaka 560-8531 Japan
| | - Kazukuni Tahara
- Department of Applied Chemistry, School of Science and Technology, Meiji University 1-1-1 Higashimita, Tama-ku Kawasaki 214-8571 Japan
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Xie R, Hu Y, Lee SL. A Paradigm Shift from 2D to 3D: Surface Supramolecular Assemblies and Their Electronic Properties Explored by Scanning Tunneling Microscopy and Spectroscopy. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2023; 19:e2300413. [PMID: 36922729 DOI: 10.1002/smll.202300413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2023] [Revised: 02/21/2023] [Indexed: 06/15/2023]
Abstract
Exploring supramolecular architectures at surfaces plays an increasingly important role in contemporary science, especially for molecular electronics. A paradigm of research interest in this context is shifting from 2D to 3D that is expanding from monolayer, bilayers, to multilayers. Taking advantage of its high-resolution insight into monolayers and a few layers, scanning tunneling microscopy/spectroscopy (STM/STS) turns out a powerful tool for analyzing such thin films on a solid surface. This review summarizes the representative efforts of STM/STS studies of layered supramolecular assemblies and their unique electronic properties, especially at the liquid-solid interface. The superiority of the 3D molecular networks at surfaces is elucidated and an outlook on the challenges that still lie ahead is provided. This review not only highlights the profound progress in 3D supramolecular assemblies but also provides researchers with unusual concepts to design surface supramolecular structures with increasing complexity and desired functionality.
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Affiliation(s)
- Rongbin Xie
- Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, China
- College of Civil and Transportation Engineering, Shenzhen University, Shenzhen, 518060, China
| | - Yi Hu
- Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, China
| | - Shern-Long Lee
- Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, China
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Sahare S, Ghoderao P, Chan Y, Lee SL. Surface supramolecular assemblies tailored by chemical/physical and synergistic stimuli: a scanning tunneling microscopy study. NANOSCALE 2023; 15:1981-2002. [PMID: 36515142 DOI: 10.1039/d2nr05264d] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Supramolecular self-assemblies formed by various non-covalent interactions can produce diverse functional networks on solid surfaces. These networks have recently attracted much interest from both fundamental and application points of view. Unlike covalent organic frameworks (COFs), the properties of the assemblies differ from each other depending on the constituent motifs. These various motifs may find diverse applications such as in crystal engineering, surface modification, and molecular electronics. Significantly, these interactions between/among the molecular tectonics are relatively weak and reversible, which makes them responsive to external stimuli. Moreover, for a liquid-solid-interface environment, the dynamic processes are amenable to in situ observation using scanning tunneling microscopy (STM). In the literature, most review articles focus on supramolecular self-assembly interactions. This review summarizes the recent literature in which stimulation sources, including chemical, physical, and their combined stimuli, cooperatively tailor supramolecular assemblies on surfaces. The appropriate design and synthesis of functional molecules that can be integrated on different surfaces permits the use of nanostructured materials and devices for bottom-up nanotechnology. Finally, we discuss synergic effect on materials science.
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Affiliation(s)
- Sanjay Sahare
- Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, 518060, China.
- Faculty of Physics, Adam Mickiewicz University, Poznań, 61-614, Poland
| | - Prachi Ghoderao
- Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, 518060, China.
| | - Yue Chan
- Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, 518060, China.
| | - Shern-Long Lee
- Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, 518060, China.
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Chen TM, Tanaka Y, Kametani Y, Cheng K, Lin C, Lin YR, Hsu T, Chen Z, Hao J, Mori S, Shiota Y, Yoshizawa K, Furuta H, Shimizu S, Chen C. Spontaneous Assembly and Three‐Dimensional Stacking of Antiaromatic 5,15‐Dioxaporphyrin on HOPG. Angew Chem Int Ed Engl 2022; 61:e202212726. [DOI: 10.1002/anie.202212726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Tsang‐Wei Matt Chen
- Department of Chemistry and Center for Emerging Material and Advanced Devices National Taiwan University Taipei 10617 Taiwan
| | - Yuki Tanaka
- Department of Applied Chemistry Graduate School of Engineering and Center for Molecular Systems (CMS) Kyushu University Fukuoka 819-0395 Japan
| | - Yohei Kametani
- Institute for Materials Chemistry and Engineering and Integrated Research Consortium on Chemical Science Kyushu University Fukuoka 819-0395 Japan
| | - Kum‐Yi Cheng
- Department of Chemistry and Center for Emerging Material and Advanced Devices National Taiwan University Taipei 10617 Taiwan
| | - Chih‐Hsun Lin
- Department of Chemistry and Center for Emerging Material and Advanced Devices National Taiwan University Taipei 10617 Taiwan
| | - Yi Rick Lin
- Department of Chemistry and Center for Emerging Material and Advanced Devices National Taiwan University Taipei 10617 Taiwan
| | - Ting‐Rong Hsu
- Department of Chemistry and Center for Emerging Material and Advanced Devices National Taiwan University Taipei 10617 Taiwan
| | - Zuqian Chen
- Department of Applied Chemistry Graduate School of Engineering and Center for Molecular Systems (CMS) Kyushu University Fukuoka 819-0395 Japan
| | - Jiping Hao
- Department of Applied Chemistry Graduate School of Engineering and Center for Molecular Systems (CMS) Kyushu University Fukuoka 819-0395 Japan
| | - Shigeki Mori
- Advanced Research Center (ADRES) Ehime University Matsuyama 790-8577 Japan
| | - Yoshihito Shiota
- Institute for Materials Chemistry and Engineering and Integrated Research Consortium on Chemical Science Kyushu University Fukuoka 819-0395 Japan
| | - Kazunari Yoshizawa
- Institute for Materials Chemistry and Engineering and Integrated Research Consortium on Chemical Science Kyushu University Fukuoka 819-0395 Japan
| | - Hiroyuki Furuta
- Department of Applied Chemistry Graduate School of Engineering and Center for Molecular Systems (CMS) Kyushu University Fukuoka 819-0395 Japan
| | - Soji Shimizu
- Department of Applied Chemistry Graduate School of Engineering and Center for Molecular Systems (CMS) Kyushu University Fukuoka 819-0395 Japan
| | - Chun‐hsien Chen
- Department of Chemistry and Center for Emerging Material and Advanced Devices National Taiwan University Taipei 10617 Taiwan
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Monolayer and Bilayer Formation of Molecular 2D Networks Assembled at the Liquid/Solid Interfaces by Solution-Based Drop-Cast Method. Molecules 2021; 26:molecules26247707. [PMID: 34946789 PMCID: PMC8706512 DOI: 10.3390/molecules26247707] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/11/2021] [Accepted: 12/12/2021] [Indexed: 11/19/2022] Open
Abstract
In recent years, extending self-assembled structures from two-dimensions (2D) to three-dimensions (3D) has been a paradigm in surface supramolecular chemistry and contemporary nanotechnology. Using organic molecules of p-terphenyl-3,5,3′,5′-tetracarboxylic acid (TPTC), and scanning tunneling microscopy (STM), we present a simple route, that is the control of the solute solubility in a sample solution, to achieve the vertical growth of supramolecular self-assemblies, which would otherwise form monolayers at the organic solvent/graphite interface. Presumably, the bilayer formations were based on π-conjugated overlapped molecular dimers that worked as nuclei to induce the yielding of the second layer. We also tested other molecules, including trimesic acid (TMA) and 1,3,5-tris(4-carboxyphenyl)-benzene (BTB), as well as the further application of our methodology, demonstrating the facile preparation of layered assemblies.
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