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Ghasemlou S, Cuppen HM. Mechanism of Phase Transition in dl-Methionine: Determining Cooperative and Molecule-by-Molecule Transformations. ACS OMEGA 2024; 9:3229-3239. [PMID: 38284040 PMCID: PMC10809693 DOI: 10.1021/acsomega.3c04846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 08/30/2023] [Accepted: 09/04/2023] [Indexed: 01/30/2024]
Abstract
The solid-state phase transition in dl-methionine has been extensively studied because of its atypical behavior. The transition occurs through changes in the molecular conformation and 3D packing of the molecules. Phase transitions in racemic aliphatic amino acid crystals are known to show different behaviors depending on whether conformational changes or packing changes are involved, where the former is thought to proceed through a nucleation-and-growth mechanism in a standard molecule-by-molecule picture, and the latter through a cooperative mechanism. The phase transition of dl-methionine resembles the thermodynamic, kinetic, and structural features of both categories: a conformational change and relative shifts between layers in two directions. The present paper presents molecular dynamics simulations of the phase transition to examine the underlying mechanism from two perspectives: (i) analysis of the scaling behavior of the free energy barriers involved in the phase transition and (ii) a structural inspection of the phase transition. Both methods can help to distinguish between a concerted phase change and a molecule-by-molecule or zip-like mechanism. The free energy predominantly scales with the system size, which suggests a cooperative mechanism. The structural changes draw, however, a slightly more complex picture. The conformational changes appear to occur in a molecule-by-molecule fashion, where the rotational movement is triggered by movement in the same layer. Conformational changes occur on a time scale nearly twice as long as the shifts between layers. Shifts in one direction appear to be less concerted than shifts in the perpendicular direction. We relate this to the edge-free energy involved in these shifts. We believe that the behavior observed in dl-methionine is likely applicable to phase transitions in other layered systems that interact through aliphatic chains as well.
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Affiliation(s)
- Saba Ghasemlou
- Faculty
of Science, Institute for Molecules and
Materials, Radboud University, Nijmegen 6500 HC, The Netherlands
| | - Herma M. Cuppen
- Faculty
of Science, Institute for Molecules and
Materials, Radboud University, Nijmegen 6500 HC, The Netherlands
- Computational
Chemistry Group, Van’t Hoff Institute
for Molecular Sciences, University of Amsterdam, Amsterdam 1090 GD, The Netherlands
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Costa S, Walters DT, McNamara LE, Olmstead MM, Fettinger JC, Balch AL. Structure and Luminescence Studies of Salts of the Helical Dication, [Au 2(μ-bis(diphenylphosphine)ethane) 2] 2+ and Comparison with Salts of [Au 2(μ-bis(diphenylphosphine)propane) 2] 2. Inorg Chem 2023; 62:15902-15911. [PMID: 37721543 DOI: 10.1021/acs.inorgchem.3c01961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2023]
Abstract
Six salts ([Au2(μ-dppe)2](BF4)2·CHCl3, [Au2(μ-dppe)2](BF4)2·1,2-Cl2C2H4, [Au2(μ-dppe)2](PF6)2·CHCl3, [Au2(μ-dppe)2](PF6)2, [Au2(μ-dppe)2](SbF6)2, and [Au2(μ-dppe)2](OTf)2·2CHCl3), (dppe is bis(diphenylphosphine)ethane) containing the dication, [Au2(μ-dppe)2]2+, have been prepared and structurally characterized by single-crystal X-ray crystallography. Unlike the three-coordinate dppe-bridged dimers, Au2X2(μ-dppe)2 (X = Br, I), which show considerable variation in the distance between the gold(I) ions over the range 3.0995(10) to 3.8479(3) Å in various solvates, the structure of the helical dication, [Au2(μ-dppe)2], in the new salts is remarkably consistent with the Au···Au separation falling in the narrow range 2.8787(9) to 2.9593(5) Å. In the solid state, the six crystals display a green luminescence both at room temperature and at 77 K, which has been assigned as phosphorescence. However, solutions of the dication are not luminescent. Salts containing the analogous dication [Au2(μ-dppp)2](PF6)2 (dppp is bis(diphenylphosphine)propane) have been prepared to determine whether the longer bridging ligand might also twist into a helical shape. These salts include [Au2(μ-dppp)2](OTf)2 (OTf is triflate) and three crystalline forms of [Au2(μ-dppp)2](PF6)2: the solvate [Au2(μ-dppp)2](PF6)2·(CHCl3) and two polymorphs of the unsolvated salt. None of these crystals are luminescent, but all contain a similar dication, [Au2(μ-dppp)2]2+, that contains two nearly parallel, linear P-Au-P groups and a long separation between the gold ions that varies from 5.3409(4) to 5.6613(6)Å.
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Affiliation(s)
- Sarah Costa
- Department of Chemistry, University of California, Davis, One Shields Ave, Davis, California 05616, United States
| | - Daniel T Walters
- Department of Chemistry, University of California, Davis, One Shields Ave, Davis, California 05616, United States
| | - Lauren E McNamara
- Department of Chemistry, University of California, Davis, One Shields Ave, Davis, California 05616, United States
| | - Marilyn M Olmstead
- Department of Chemistry, University of California, Davis, One Shields Ave, Davis, California 05616, United States
| | - James C Fettinger
- Department of Chemistry, University of California, Davis, One Shields Ave, Davis, California 05616, United States
| | - Alan L Balch
- Department of Chemistry, University of California, Davis, One Shields Ave, Davis, California 05616, United States
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A Novel Photoluminescent Ag/Cu Cluster Exhibits a Chromic Photoluminescence Response towards Volatile Organic Vapors. Molecules 2023; 28:molecules28031257. [PMID: 36770923 PMCID: PMC9921385 DOI: 10.3390/molecules28031257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Revised: 01/19/2023] [Accepted: 01/24/2023] [Indexed: 01/31/2023] Open
Abstract
A new Ag/Cu bimetallic cluster [Ag10Cu6(bdppthi)2(C≡CPh)12(EtOH)2](ClO4)4 (1, bdppthi = N,N'-bis(diphenylphosphanylmethyl)-tetrahydroimidazole) exhibited strong phosphorescent (PL) emission at 644 nm upon excitation at 400 nm. Removal of the coordinated EtOH molecules in 1 resulted in derivative 1a, which exhibited significant red-shifted emission at 678 nm. The structure and PL of 1 was restored on exposure to EtOH vapor. Cluster 1a also exhibited a vapor-chromic PL response towards other common organic solvent vapors including acetone, MeOH and MeCN. A PMMA film of 1a was developed as a reusable visible sensor for MeCN.
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Perruchas S. Molecular copper iodide clusters: a distinguishing family of mechanochromic luminescent compounds. Dalton Trans 2021; 50:12031-12044. [PMID: 34378598 DOI: 10.1039/d1dt01827b] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Mechanochromic luminescent materials displaying switchable luminescence properties in response to external mechanical force are currently attracting wide interest because of their multiple potential applications. In the growing number of mechanochromic luminescent compounds, mechanochromic complexes based on copper present appealing features with a large variety of mechanochromic properties and economical advantages over other metals. Among Cu-based compounds, molecular copper iodide clusters of cubane geometry with formula [Cu4I4L4] (L = organic ligand) stand out. Indeed, they can exhibit multiple luminescent stimuli-responsive properties, being particularly suitable for the development of multifunctional photoactive systems. This perspective describes the survey of these mechanochromic luminescent cubane copper iodide clusters. Based on our investigations, their mechanochromic luminescence properties are presented along with the study of the underlying mechanism. Establishment of structure-property relationships supported by various characterization techniques and associated with theoretical investigations permits gaining insights into the mechanism at play. Studies of other researcher groups are also described and illustrate the interest shown by these mechanochromic compounds. Mechanically responsive films are reported, demonstrating their potential use in a range of applications of such copper-based stimuli-responsive materials. Current challenges faced by the development of technological applications are finally outlined.
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Affiliation(s)
- Sandrine Perruchas
- Université de Nantes, CNRS, Institut des Matériaux Jean Rouxel, IMN, F-44000 Nantes, France.
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