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Parida C, Chowdhuri S. Effects of Hydrogen Peroxide on the Hydrogen Bonding Structure and Dynamics of Water and Its Influence on the Aqueous Solvation of the Insulin Monomer. J Phys Chem B 2023; 127:10814-10823. [PMID: 38055728 DOI: 10.1021/acs.jpcb.3c05107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/08/2023]
Abstract
The hydrogen bond structure and dynamics of water and hydrogen peroxide (H2O2) in their binary mixtures have been studied at 298 K by classical molecular dynamics simulations. Twelve different concentrations of aqueous-H2O2 solutions are considered for this study. We have analyzed the interactions between water and H2O2 by site-site pair correlation functions and observed that the probability of formation of OW···HP hydrogen bonds are higher compared to OP···HW. The second solvation shell of water is strongly affected by increasing H2O2 concentrations (XP > 0.50), which signifies the destruction of the tetrahedral network structure of water. The translational and rotational dynamics of water and H2O2 do not significantly change up to 25% of H2O2 in aqueous mixtures. The hydrogen bond lifetime of water-water, water-H2O2, and H2O2-H2O2 in the aqueous-H2O2 solutions shows a very minimal change with increasing H2O2 concentrations. In addition to this, we also investigated the effect of H2O2 on the insulin monomer and observed that higher concentrations of H2O2 (XP = 0.10) change the secondary structure. The influence of H2O2 is more on chain-B than that on chain-A in the insulin monomer. The H2O2 occupancy at the protein surface is higher for negatively charged (GLU) and polar (ASN and THR) amino acid residues compared with that for positively charged and neutral residues in the solutions.
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Affiliation(s)
- Chinmay Parida
- School of Basic Sciences, Indian Institute of Technology, Bhubaneswar 752050, India
| | - Snehasis Chowdhuri
- School of Basic Sciences, Indian Institute of Technology, Bhubaneswar 752050, India
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Arismendi-Arrieta DJ, Sen A, Eriksson A, Broqvist P, Kullgren J, Hermansson K. H2O2(s) and H2O2·2H2O(s) crystals compared with ices: DFT functional assessment and D3 analysis. J Chem Phys 2023; 159:194701. [PMID: 37966002 DOI: 10.1063/5.0145203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 07/27/2023] [Indexed: 11/16/2023] Open
Abstract
The H2O and H2O2 molecules resemble each other in a multitude of ways as has been noted in the literature. Here, we present density functional theory (DFT) calculations for the H2O2(s) and H2O2·2H2O(s) crystals and make selected comparisons with ice polymorphs. The performance of a number of dispersion-corrected density functionals-both self-consistent and a posteriori ones-are assessed, and we give special attention to the D3 correction and its effects. The D3 correction to the lattice energies is large: for H2O2(s) the D3 correction constitutes about 25% of the lattice energy using PBE, much more for RPBE, much less for SCAN, and it primarily arises from non-H-bonded interactions out to about 5 Å.The large D3 corrections to the lattice energies are likely a consequence of several effects: correction for missing dispersion interaction, the ability of D3 to capture and correct various other kinds of limitations built into the underlying DFT functionals, and finally some degree of cell-contraction-induced polarization enhancement. We find that the overall best-performing functionals of the twelve examined are optPBEvdW and RPBE-D3. Comparisons with DFT assessments for ices in the literature show that where the same methods have been used, the assessments largely agree.
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Affiliation(s)
| | - Anik Sen
- Department of Chemistry-Ångström, Uppsala University, P.O. Box 530, S-75121 Uppsala, Sweden
| | - Anders Eriksson
- Department of Chemistry-Ångström, Uppsala University, P.O. Box 530, S-75121 Uppsala, Sweden
| | - Peter Broqvist
- Department of Chemistry-Ångström, Uppsala University, P.O. Box 530, S-75121 Uppsala, Sweden
| | - Jolla Kullgren
- Department of Chemistry-Ångström, Uppsala University, P.O. Box 530, S-75121 Uppsala, Sweden
| | - Kersti Hermansson
- Department of Chemistry-Ångström, Uppsala University, P.O. Box 530, S-75121 Uppsala, Sweden
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Rao Z, Fang YG, Pan Y, Yu W, Chen B, Francisco JS, Zhu C, Chu C. Accelerated Photolysis of H 2O 2 at the Air-Water Interface of a Microdroplet. J Am Chem Soc 2023. [PMID: 37914533 DOI: 10.1021/jacs.3c08101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023]
Abstract
Photochemical homolysis of hydrogen peroxide (H2O2) occurs widely in nature and is a key source of hydroxyl radicals (·OH). The kinetics of H2O2 photolysis play a pivotal role in determining the efficiency of ·OH production, which is currently mainly investigated in bulk systems. Here, we report considerably accelerated H2O2 photolysis at the air-water interface of microdroplets, with a rate 1.9 × 103 times faster than that in bulk water. Our simulations show that due to the trans quasiplanar conformational preference of H2O2 at the air-water interface compared to the bulk or gas phase, the absorption peak in the spectrum of H2O2 is significantly redshifted by 45 nm, corresponding to greater absorbance of photons in the sunlight spectrum and faster photolysis of H2O2. This discovery has great potential to solve current problems associated with ·OH-centered heterogeneous photochemical processes in aerosols. For instance, we show that accelerated H2O2 photolysis in microdroplets could lead to markedly enhanced oxidation of SO2 and volatile organic compounds.
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Affiliation(s)
- Zepeng Rao
- Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Ye-Guang Fang
- College of Chemistry, Key Laboratory of Theoretical & Computational Photochemistry of Ministry of Education, Beijing Normal University, Beijing 100875 China
- Laboratory of Theoretical and Computational Nanoscience, CAS Key Laboratory of Nanosystem and Hierarchical Fabrication, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing 100190 China
| | - Yishuai Pan
- Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Wanchao Yu
- Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Baoliang Chen
- Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Joseph S Francisco
- Department of Earth and Environmental Science and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Chongqin Zhu
- College of Chemistry, Key Laboratory of Theoretical & Computational Photochemistry of Ministry of Education, Beijing Normal University, Beijing 100875 China
| | - Chiheng Chu
- Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
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Biswas A, Mallik BS. Direct Correlation between Short-Range Vibrational Spectral Diffusion and Localized Ion-Cage Dynamics of Water-in-Salt Electrolytes. J Phys Chem B 2023; 127:236-248. [PMID: 36575973 DOI: 10.1021/acs.jpcb.2c04391] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
The molecular dynamics simulations of a "water-in-salt" electrolyte, lithium bis(trifluoromethyl sulfonyl) imide (LiNTf2), with a varying concentration range of 3 to 20 m were performed to establish a direct connection between a dynamic property like the ion-cage lifetime with the short-range vibrational stretching frequency shift of the used probe, HOD. The properties reported here are compared to that obtained from experiments performed at the same concentrations. The time-series wavelet transform was adopted as a preferable mathematical tool for calculating the instantaneous fluctuating frequencies of the probe O-D stretch mode and the concentration-dependent vibrational stretch spectral signature based on the variable functions associated with a particular chemical bond derived from classical molecular dynamics trajectories. The decay time constants of frequency fluctuations and the lifetime of the ion cage (τIC) were estimated as a function of salt concentration. Herein, we emphasize the correlation between the slowest time constant (τ3) of the decay of O-D stretch frequency fluctuations and the timescales associated with the lifetime of ion cages (τIC). The results exhibit that the existing relationships were also concentration-dependent. Therefore, this study highlights the connection between the ionic motions that regulate the overall system dynamics with the short-range vibrational frequency shift of the used probe, which was used similar to experiments. It also provides an understanding of the interionic interactions and the dynamical and spectral properties of the electrolytic mixtures. We establish a direct correlation between short-range frequency profile and localized ion-cage lifetime, which can fill the gap of understanding between viscosity, vibrational frequency, and ion-cage dynamics of electrolytes.
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Affiliation(s)
- Aritri Biswas
- Department of Chemistry, Indian Institute of Technology Hyderabad, Sangareddy502285, Telangana, India
| | - Bhabani S Mallik
- Department of Chemistry, Indian Institute of Technology Hyderabad, Sangareddy502285, Telangana, India
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Biswas A, Mallik BS. Molecular Simulation-Guided Spectroscopy of Imidazolium-Based Ionic Liquids and Effects of Methylation on Ion-Cage and -Pair Dynamics. J Phys Chem B 2022; 126:8838-8850. [PMID: 36264223 DOI: 10.1021/acs.jpcb.2c04901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Classical molecular dynamics simulations were performed to assess an atomistic interpretation of the ion-probe structural interactions in two typical ionic liquids (ILs), 1-butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide [BMIm][NTf2] and 1-butyl-2,3-dimethylimidazolium bis(trifluoromethylsulfonyl)imide [BDimIm][NTf2] through computational ultrafast spectroscopy. The nitrile stretching vibrations of the thiocyanate anion, [SCN]-, serve as the local mode of the ultrafast system dynamics within the imidazolium-based ionic liquid environment. The wavelet transform of classical trajectories determines the time-varying fluctuating frequencies and the stretch spectral signatures of SCN- in the normalized distribution. However, computational modeling of the two-dimensional (2D) spectra from the wavelet-derived vibrational frequencies yields time evolution of the local molecular structure along with the varied time-dependent dynamics of the spectral diffusion process. We calculated the frequency-frequency correlation functions (FFCFs), time correlations associated with the ion-pair and -cage dynamics, and mean square displacements as a function of time, depicting diffusive dynamics. The calculated results based on the pair correlation functions and the distribution of atomic density suggest that the hydrogen and methylated carbon at the two-position of the imidazolium ring of [BMIm] and [BDimIm] cations, respectively, strongly interact with the probe through the N of the thiocyanate anion rather than the S atom. The center-of-mass center-of-mass (COM-COM) cation-probe radial distribution functions (RDFs) in conjunction with the site-specific structural analysis further reveal well-structured interactions of the thiocyanate ion and [BMIm]+ cation rather than the [BDimIm] cation. In contrast, the anion-probe COM-COM RDFs depict weak interactive associations within the vibrational probe [SCN]- and [NTf2]- ions. Methylation at the two-position of the imidazolium ring predicts slower structural reorganization and breaking and reformation dynamics of the ion pairs and cages within the ionic liquid framework.
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Affiliation(s)
- Aritri Biswas
- Department of Chemistry, Indian Institute of Technology Hyderabad, Sangareddy502285, Telangana, India
| | - Bhabani S Mallik
- Department of Chemistry, Indian Institute of Technology Hyderabad, Sangareddy502285, Telangana, India
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Priyadarsini A, Mallik BS. Structure and rotational dynamics of water around hydrogen peroxide. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Ruiz-López MF, Martins-Costa MTC, Francisco JS, Anglada JM. Tight electrostatic regulation of the OH production rate from the photolysis of hydrogen peroxide adsorbed on surfaces. Proc Natl Acad Sci U S A 2021; 118:e2106117118. [PMID: 34290148 PMCID: PMC8325346 DOI: 10.1073/pnas.2106117118] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
Recently, experimental and theoretical works have reported evidence indicating that photochemical processes may significantly be accelerated at heterogeneous interfaces, although a complete understanding of the phenomenon is still lacking. We have carried out a theoretical study of interface and surface effects on the photochemistry of hydrogen peroxide (H2O2) using high-level ab initio methods and a variety of models. Hydrogen peroxide is an important oxidant that decomposes in the presence of light, forming two OH radicals. This elementary photochemical process has broad interest and is used in many practical applications. Our calculations show that it can drastically be affected by heterogeneous interfaces. Thus, compared to gas phase, the photochemistry of H2O2 appears to be slowed on the surface of apolar or low-polar surfaces and, in contrast, hugely accelerated on ionic surfaces or the surface of aqueous electrolytes. We give particular attention to the case of the neat air-water interface. The calculated photolysis rate is similar to the gas phase, which stems from the compensation of two opposite effects, the blue shift of the n→σ* absorption band and the increase of the absorption intensity. Nevertheless, due to the high affinity of H2O2 for the air-water interface, the predicted OH production rate is up to five to six orders of magnitude larger. Overall, our results show that the photochemistry of H2O2 in heterogeneous environments is greatly modulated by the nature of the surface, and this finding opens interesting new perspectives for technological and biomedical applications, and possibly in various atmospheres.
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Affiliation(s)
- Manuel F Ruiz-López
- Laboratoire de Physique et Chimie Théoriques, CNRS UMR 7019, University of Lorraine, 54506 Vandoeuvre-lès-Nancy, France;
| | - Marilia T C Martins-Costa
- Laboratoire de Physique et Chimie Théoriques, CNRS UMR 7019, University of Lorraine, 54506 Vandoeuvre-lès-Nancy, France
| | - Joseph S Francisco
- Department of Earth and Environmental Science, University of Pennsylvania, Philadelphia, PA 19104;
- Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104
| | - Josep M Anglada
- Departament de Química Biològica, Institut de Química Avançada de Catalunya, Consejo Superior de Investigaciones Científicas, E-08034 Barcelona, Spain
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Bredt AJ, Mendes de Oliveira D, Urbina AS, Slipchenko LV, Ben-Amotz D. Hydration and Seamless Integration of Hydrogen Peroxide in Water. J Phys Chem B 2021; 125:6986-6993. [PMID: 34133177 DOI: 10.1021/acs.jpcb.1c03107] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Raman multivariate curve resolution is used to decompose the vibrational spectra of aqueous hydrogen peroxide (H2O2) into pure water, dilute H2O2, and concentrated H2O2 spectral components. The dilute spectra reveal four sub-bands in the OH stretch region, assigned to the OH stretch and Fermi resonant bend overtone of H2O2, and two nonequivalent OH groups on water molecules that donate a hydrogen bond to H2O2. At high concentrations, a spectral component resembling pure H2O2 emerges. Our results further demonstrate that H2O2 perturbs the structure of water significantly less than either methanol or sodium chloride of the same concentration, as evidenced by comparing the hydration-shell spectra of tert-butyl alcohol dissolved in the three aqueous solutions.
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Affiliation(s)
- Aria J Bredt
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | | | - Andres S Urbina
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Lyudmila V Slipchenko
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Dor Ben-Amotz
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
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Biswas A, Mallik BS. Conformation-induced vibrational spectral dynamics of hydrogen peroxide and vicinal water molecules. Phys Chem Chem Phys 2021; 23:6665-6676. [PMID: 33710191 DOI: 10.1039/d0cp06028c] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
We studied the conformation-induced spectral response of water molecules due to site-specific structural alterations of solvated hydrogen peroxide (H2O2) employing DFT-based first principles molecular dynamics (FPMD) simulations. Wavelet transform was used to determine the time-dependent frequencies of the hydroxyls of water molecules and the O-H stretch modes of H2O2. Shifts in the vibrational frequency of the hydrogen-bonded hydroxyls inside the solvation shell of H2O2 support multiple distinctive hydrogen bonding environments. This paper classifies two distinct hydrogen bond types inside the O-OW solvation shell of H2O2, and the dynamical calculations provide a quantitative estimation of the relative hydrogen bond strength. We ascertain the reason for not observing the escape of water molecules from the hydrogen peroxide hydration shell, unlike the solvation shell of ionic solutions and neutral solutes. Besides, we provide a comprehensive analysis of the spectral shifts in the normalized frequency distribution, the time-dependent decay of frequency-frequency correlation functions, and the hydrogen bond length scale fluctuations. We also quantify the relative contribution of the cisoid and transoid conformers affecting the vibrational spectral signature of the vicinal water molecules. While the transoid conformers promote the hydrogen bonding interactions through the oxygen site (OHW), the cisoid conformers facilitate hydrogen peroxide-water hydrogen bond formation through the hydrogen site (HOW). These non-identical hydrogen bond associations stabilize hydrogen peroxide in water.
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Affiliation(s)
- Aritri Biswas
- Department of Chemistry, Indian Institute of Technology Hyderabad, Sangareddy-502285, Telangana, India.
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