Complexity of a peroxidase-oxidase reaction model

Complex dynamics in an unexplored simple model of the peroxidase-oxidase reaction

A previously overlooked version of the so-called Olsen model of the peroxidase-oxidase reaction has been studied numerically using 2D isospike stability and maximum Lyapunov exponent diagrams and reveals a rich variety of dynamic behaviors not observed before. The model has a complex bifurcation structure involving mixed-mode and bursting oscillations as well as quasiperiodic and chaotic dynamics. In addition, multiple periodic and non-periodic attractors coexist for the same parameters. For some parameter values, the model also reveals formation of mosaic patterns of complex dynamic states. The complex dynamic behaviors exhibited by this model are compared to those of another version of the same model, which has been studied in more detail. The two models show similarities, but also notable differences between them, e.g., the organization of mixed-mode oscillations in parameter space and the relative abundance of quasiperiodic and chaotic oscillations. In both models, domains with chaotic dynamics contain apparently disorganized subdomains of periodic attractors with dinoflagellate-like structures, while the domains with mainly quasiperiodic behavior contain subdomains with periodic attractors organized as regular filamentous structures. These periodic attractors seem to be organized according to Stern-Brocot arithmetics. Finally, it appears that toroidal (quasiperiodic) attractors develop into first wrinkled and then fractal tori before they break down to chaotic attractors.

Complexity in subnetworks of a peroxidase-oxidase reaction model

The peroxidase-oxidase (PO) reaction is a paradigmatic (bio)chemical system well suited to study the organization and stability of self-sustained oscillatory phases typically present in nonlinear systems. The PO reaction can be simulated by the state-of-the-art Bronnikova-Fedkina-Schaffer-Olsen model involving ten coupled ordinary differential equations. The complex and dynamically rich distribution of self-sustained oscillatory stability phases of this model was recently investigated in detail. However, would it be possible to understand aspects of such a complex model using much simpler models? Here, we investigate stability phases predicted by three simple four-variable subnetworks derived from the complete model. While stability diagrams for such subnetworks are found to be distorted compared to those of the complete model, we find them to surprisingly preserve significant features of the original model as well as from the experimental system, e.g., period-doubling and period-adding scenarios. In addition, return maps obtained from the subnetworks look very similar to maps obtained in the experimental system under different conditions. Finally, two of the three subnetwork models are found to exhibit quint points, i.e., recently reported singular points where five distinct stability phases coalesce. We also provide experimental evidence that such quint points are present in the PO reaction.

Non-quantum chirality in a driven Brusselator

We report the discovery of non-quantum chirality in the a periodically driven Brusselator. In contrast to standard chirality from quantum contexts, this novel type of chirality is governed by rate equations, namely by purely classical equations of motion. The Brusselator chirality was found by computing high-resolution phase diagrams depicting the number of spikes, local maxima, observed in stable periodic oscillations of the Brusselator as a function of the frequency and amplitude of the external drive. We also discuss how to experimentally observe non-quantum chirality in generic oscillators governed by nonlinear sets of rate equations.

Chirality observed in a driven ruthenium-catalyzed Belousov-Zhabotinsky reaction model

Chirality is commonly associated with the spatial geometry of the atoms composing molecules, the biochemistry of living organisms, and spin properties. In sharp contrast, here we report chirality found in numerically computed stability diagrams of a chemical reaction governed by purely classical (that is, not quantum) equations, namely in a photochemically periodically perturbed ruthenium-catalyzed Belousov-Zhabotinsky reaction model. This novel chirality offers opportunities to explore hitherto unsuspected properties of purely classical chemical oscillators.

Origins of oscillatory dynamics in the model of reactive oxygen species in the rhizosphere

Oscillatory processes are essential for normal functioning and survival of biological systems, and reactive oxygen species have a prominent role in many of them. A mechanism representing the dynamics of these species in the rhizosphere is analyzed using stoichiometric network analysis with the aim to determine its capabilities to simulate various dynamical states, including oscillations. A detailed analysis has shown that unstable steady states result from four destabilizing feedback cycles, among which the cycle involving hydroquinone, an electron acceptor, and its semi-reduced form is the dominant one responsible for the existence of saddle-node and Andronov-Hopf bifurcations. This requires a higher steady-state concentration for the reduced electron acceptor compared to that of the remaining species, where the level of oxygen steady-state concentration determines whether the Andronov-Hopf or saddle-node bifurcation will occur.

Ubiquity of ring structures in the control space of complex oscillators

We report the discovery of two types of stability rings in the control parameter space of a vertical-cavity surface-emitting semiconductor laser. Stability rings are closed parameter paths in the laser control space. Inside such rings, laser stability thrives even in the presence of small parameter fluctuations. Stability rings were also found in rather distinct contexts, namely, in the way that cancerous, normal, and effector cells interact under ionizing radiation and in oscillations of an electronic circuit with a junction-gate field-effect transistor (JFET) diode. We argue that stability-enhancing rings are generic structures present in the control parameter space of many complex systems.

Quint points lattice in a driven Belousov-Zhabotinsky reaction model

We report the discovery of a regular lattice of exceptional quint points in a periodically driven oscillator, namely, in the frequency-amplitude control parameter space of a photochemically periodically perturbed ruthenium-catalyzed Belousov-Zhabotinsky reaction model. Quint points are singular boundary points where five distinct stable oscillatory phases coalesce. While spikes of the activator show a smooth and continuous variation, the spikes of the inhibitor show an intricate but regular branching into a myriad of stable phases that have fivefold contact points. Such boundary points form a wide parameter lattice as a function of the frequency and amplitude of light absorption. These findings revise current knowledge about the topology of the control parameter space of a celebrated prototypical example of an oscillating chemical reaction.