Dual-Responsive Carbon Quantum Dots for the Simultaneous Detection of Cytosine and 5-Methylcytosine Interpreted by a Machine Learning-Assisted Smartphone

DNA methylation is an epigenetic alteration that results in 5-methylcytosine (5-mC) through the addition of a methyl group to the fifth carbon of a cytosine (C) residue. The methylation level, the ratio of 5-mC to C, in urine might be related to the whole-body epigenetic status and the occurrence of common cancers. To date, never before have any nanomaterials been developed to simultaneously determine C and 5-mC in urine samples. Herein, a dual-responsive fluorescent sensor for the urinary detection of C and 5-mC has been developed. This assay relied on changes in the optical properties of nitrogen-doped carbon quantum dots (CQDs) prepared by microwave-assisted pyrolysis. In the presence of C, the blue-shifted fluorescence intensity of the CQDs increased. However, fluorescence quenching was observed upon the addition of 5-mC. This was primarily due to photoinduced electron transfer as confirmed by the density functional theory calculation. In urine samples, our sensitive fluorescent sensor had detection limits for C and 5-mC of 43.4 and 74.4 μM, respectively, and achieved satisfactory recoveries ranging from 103.5 to 115.8%. The simultaneous detection of C and 5-mC leads to effective methylation level detection, achieving recoveries in the range of 104.6-109.5%. Besides, a machine learning-enabled smartphone was also developed, which can be effectively applied to the determination of methylation levels (0-100%). These results demonstrate a simple but very effective approach for detecting the methylation level in urine, which could have significant implications for predicting the clinical prognosis.

Supramolecular Recognition of Cytidine Phosphate in Nucleotides and RNA Sequences

Supramolecular recognition of nucleotides would enable manipulating crucial biochemical pathways like transcription and translation directly and with high precision. Therefore, it offers great promise in medicinal applications, not least in treating cancer or viral infections. This work presents a universal supramolecular approach to target nucleoside phosphates in nucleotides and RNA. The artificial active site in new receptors simultaneously realizes several binding and sensing mechanisms: encapsulation of a nucleobase via dispersion and hydrogen bonding interactions, recognition of the phosphate residue, and a self-reporting feature-"turn-on" fluorescence. Key to the high selectivity is the conscious separation of phosphate- and nucleobase-binding sites by introducing specific spacers in the receptor structure. We have tuned the spacers to achieve high binding affinity and selectivity for cytidine 5' triphosphate coupled to a record 60-fold fluorescence enhancement. The resulting structures are also the first functional models of poly(rC)-binding protein coordinating specifically to C-rich RNA oligomers, e.g., the 5'-AUCCC(C/U) sequence present in poliovirus type 1 and the human transcriptome. The receptors bind to RNA in human ovarian cells A2780, causing strong cytotoxicity at 800 nM. The performance, self-reporting property, and tunability of our approach open up a promising and unique avenue for sequence-specific RNA binding in cells by using low-molecular-weight artificial receptors.

An effective long-wavelength fluorescent sensor for Cu2+ based on dibenzylidenehydrazine-bridged biphenylacrylonitrile

Although numerous fluorescence sensors for Cu²⁺ have been presented, a long-wavelength sensor in aqueous media has rarely been reported as expected due to practical application requirements. In this work, a novel AIE molecule (DHBB) containing two biphenylacrylonitrile units bridged by dibenzylidenehydrazine was prepared. It possessed the merits of long-wavelength emission, good emission in aqueous media, and multiple functional groups for binding Cu²⁺. It exhibited good sensing selectivity for Cu²⁺ among all kinds of tested metal ions. The detection limit was as low as 1.08 × 10^-7 M. The sensing mechanism was clarified as 1:1 stoichiometric ratio based on the binding cooperation of O and N functional groups of DHBB. The selective sensing ability for Cu²⁺ remained stable at pH = 5-9 and was influenced little by other metal ions. The Cu²⁺ sensing ability of DHBB was applied in real samples with 96% recovery rate. The bio-imaging experiment of living cells suggested that DHBB possessed not only good bio-imaging performance but also sensing ability for Cu²⁺ in living environments. This work suggested the good application prospect of DHBB to sense Cu²⁺ in real samples and living environment.

An effective dual sensor for Cu2+ and Zn2+ with long-wavelength fluorescence in aqueous media based on biphenylacrylonitrile Schiff-base

Although some sensors for Cu²⁺ and Zn²⁺ had been reported, the sensor with long-wavelength emission in aqueous media for in-situ detecting Cu²⁺ and Zn²⁺ was always expected. Herein, a biphenylacrylonitrile Schiff-base (OPBS) with large aromatic conjugated system was designed and synthesized in yield of 82%. OPBS possessed excellent long-wavelength fluorescence at 550-750 nm in aqueous media, which selectively response to sense Cu²⁺ with quenched fluorescence and Zn²⁺ with chromotropic fluorescence from red to yellow. The detection of Cu²⁺ and Zn²⁺ were realized without mutual interference in their coexistence system by means of the assistance of ATP. The detection limits were 2.3 × 10^-7 M for Cu²⁺ and 1.8 × 10^-6 M for Zn²⁺, respectively. The sensing mechanism was elucidated by binding MS spectra, fluorescence Job's plot and ¹H NMR spectra. Moreover, OPBS exhibited good bioimaging performance and the in-situ sensing abilities for Cu²⁺ and Zn²⁺ in living cells, suggesting the application potential for detecting Cu²⁺ and Zn²⁺ in both vitro assay and vivo environment.

Chiral recognition coupled with chemometrics using boronate ensembles containing D-π-A cyanostilbenes

Two types of boronic acid-appended D-π-A cyanostilbenes were synthesized to produce chiral boronate ensembles via dehydration with tartaric acid. The aggregation-induced high sensitivity and positional effect of the CN group on the emission properties allowed for chemometrics-coupled chiral recognition.