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Chekli Y, Thiriet-Rupert S, Caillet C, Quilès F, Le Cordier H, Deshayes E, Bardiaux B, Pédron T, Titecat M, Debarbieux L, Ghigo JM, Francius G, Duval JFL, Beloin C. Biophysical insights into sugar-dependent medium acidification promoting YfaL protein-mediated Escherichia coli self-aggregation, biofilm formation and acid stress resistance. NANOSCALE 2024; 16:17567-17584. [PMID: 39225712 DOI: 10.1039/d4nr01884b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
The ability of bacteria to interact with their environment is crucial to form aggregates and biofilms, and develop a collective stress resistance behavior. Despite its environmental and medical importance, bacterial aggregation is poorly understood and mediated by few known adhesion structures. Here, we identified a new role for a surface-exposed Escherichia coli protein, YfaL, which can self-recognize and induce bacterial autoaggregation. This process occurs only under acidic conditions generated during E. coli growth in the presence of fermentable sugars. These findings were supported by electrokinetic and atomic force spectroscopy measurements, which revealed changes in the electrostatic, hydrophobic, and structural properties of YfaL-decorated cell surface upon sugar consumption. Furthermore, YfaL-mediated autoaggregation promotes biofilm formation and enhances E. coli resistance to acid stress. The prevalence and conservation of YfaL in environmental and clinical E. coli suggest strong evolutionary selection for its function inside or outside the host. Overall, our results emphasize the importance of environmental parameters such as low pH as physicochemical cues influencing bacterial adhesion and aggregation, affecting E. coli and potentially other bacteria's resistance to environmental stress.
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Affiliation(s)
- Yankel Chekli
- Institut Pasteur, Université Paris Cité, Genetics of Biofilms Laboratory, 75015 Paris, France
| | | | - Céline Caillet
- Université de Lorraine, CNRS, Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), F-54000 Nancy, France
| | - Fabienne Quilès
- Université de Lorraine, CNRS, LCPME UMR 7564, F-54000 Nancy, France.
| | - Hélène Le Cordier
- Université de Lorraine, CNRS, Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), F-54000 Nancy, France
| | - Emilie Deshayes
- Institut Pasteur, Université Paris Cité, Genetics of Biofilms Laboratory, 75015 Paris, France
| | - Benjamin Bardiaux
- Institut Pasteur, Université Paris Cité, Bacterial Transmembrane Systems Unit, CNRS UMR 3528, Paris, France
| | - Thierry Pédron
- Institut Pasteur, Université Paris Cité, Bacteriophage Bacterium Host, 75015 Paris, France
| | - Marie Titecat
- Institut Pasteur, Université Paris Cité, Bacteriophage Bacterium Host, 75015 Paris, France
| | - Laurent Debarbieux
- Institut Pasteur, Université Paris Cité, Bacteriophage Bacterium Host, 75015 Paris, France
| | - Jean-Marc Ghigo
- Institut Pasteur, Université Paris Cité, Genetics of Biofilms Laboratory, 75015 Paris, France
| | - Grégory Francius
- Université de Lorraine, CNRS, LCPME UMR 7564, F-54000 Nancy, France.
| | - Jérôme F L Duval
- Université de Lorraine, CNRS, Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC), F-54000 Nancy, France
| | - Christophe Beloin
- Université de Lorraine, CNRS, LCPME UMR 7564, F-54000 Nancy, France.
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Lin S, Wu F, Zhang Y, Chen H, Guo H, Chen Y, Liu J. Surface-modified bacteria: synthesis, functionalization and biomedical applications. Chem Soc Rev 2023; 52:6617-6643. [PMID: 37724854 DOI: 10.1039/d3cs00369h] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/21/2023]
Abstract
The past decade has witnessed a great leap forward in bacteria-based living agents, including imageable probes, diagnostic reagents, and therapeutics, by virtue of their unique characteristics, such as genetic manipulation, rapid proliferation, colonization capability, and disease site targeting specificity. However, successful translation of bacterial bioagents to clinical applications remains challenging, due largely to their inherent susceptibility to environmental insults, unavoidable toxic side effects, and limited accumulation at the sites of interest. Cell surface components, which play critical roles in shaping bacterial behaviors, provide an opportunity to chemically modify bacteria and introduce different exogenous functions that are naturally unachievable. With the help of surface modification, a wide range of functionalized bacteria have been prepared over the past years and exhibit great potential in various biomedical applications. In this article, we mainly review the synthesis, functionalization, and biomedical applications of surface-modified bacteria. We first introduce the approaches of chemical modification based on the bacterial surface structure and then highlight several advanced functions achieved by modifying specific components on the surface. We also summarize the advantages as well as limitations of surface chemically modified bacteria in the applications of bioimaging, diagnosis, and therapy and further discuss the current challenges and possible solutions in the future. This work will inspire innovative design thinking for the development of chemical strategies for preparing next-generation biomedical bacterial agents.
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Affiliation(s)
- Sisi Lin
- Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Institute of Molecular Medicine, State Key Laboratory of Systems Medicine for Cancer, Shanghai Cancer Institute, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
| | - Feng Wu
- Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Institute of Molecular Medicine, State Key Laboratory of Systems Medicine for Cancer, Shanghai Cancer Institute, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
| | - Yifan Zhang
- Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Institute of Molecular Medicine, State Key Laboratory of Systems Medicine for Cancer, Shanghai Cancer Institute, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
| | - Huan Chen
- Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Institute of Molecular Medicine, State Key Laboratory of Systems Medicine for Cancer, Shanghai Cancer Institute, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
| | - Haiyan Guo
- Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Institute of Molecular Medicine, State Key Laboratory of Systems Medicine for Cancer, Shanghai Cancer Institute, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
| | - Yanmei Chen
- Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Institute of Molecular Medicine, State Key Laboratory of Systems Medicine for Cancer, Shanghai Cancer Institute, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
| | - Jinyao Liu
- Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Institute of Molecular Medicine, State Key Laboratory of Systems Medicine for Cancer, Shanghai Cancer Institute, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
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Wu J, Liu C, Wang R, Yan S, Chen B, Zhu X. Enhanced bacterial adhesion force by rifampicin resistance promotes microbial colonization on PE plastic compared to non-resistant biofilm formation. WATER RESEARCH 2023; 242:120319. [PMID: 37441870 DOI: 10.1016/j.watres.2023.120319] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 06/30/2023] [Accepted: 07/04/2023] [Indexed: 07/15/2023]
Abstract
The microbial biofilm formed on plastics, is ubiquitous in the environment. However, the effects of antibiotic resistance on the development of the biofilm on plastics, especially with regard to initial cell attachment, remain unclear. In this study, we investigated the initial bacterial adhesion and subsequent biofilm growth of a rifampin (Rif) resistant E. coli (RRE) and a normal gram-positive B. subtilis on a typical plastic (polyethylene, PE). The experiments were conducted in different antibiotic solutions, including Rif, sulfamethoxazole (SMX), and kanamycin (KM), with concentrations ranging from 1 to 1000 μg/L to simulate different aquatic environments. The AFM-based single-cell adhesion force determination revealed that Rif resistance strengthened the adhesion force of RRE to PE in the environment rich in Rif rather than SMX and KM. The enhanced adhesion force may be due to the higher secretion of extracellular polymeric substances (EPS), particularly proteins, by RRE in the presence of Rif compared to the other two antibiotics. In addition, the higher ATP level of RRE would facilitate the initial adhesion and subsequent biofilm growth. Transcriptome analysis of RRE separately cultured in Rif and SMX environments demonstrated a clear correlation between the expression of Rif resistance and the augmented bacterial adhesion and cellular activity. Biofilm biomass analysis confirmed the promotion effect of Rif resistance on biofilm growth when compared to non-resistant biofilms, establishing a novel association with the augmentation of microbial adhesion force. Our study highlights concerns related to the dissemination of antibiotic resistance during microbial colonization on plastic that may arise from antibiotic resistance.
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Affiliation(s)
- Jiayi Wu
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Congcong Liu
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Rui Wang
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Saitao Yan
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Baoliang Chen
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Xiaoying Zhu
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, China.
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Feng JR, Deng QX, Han SK, Ni HG. Use of nanoparticle-coated bacteria for the bioremediation of organic pollution: A mini review. CHEMOSPHERE 2023; 313:137391. [PMID: 36457267 DOI: 10.1016/j.chemosphere.2022.137391] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Revised: 11/17/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
Nanoparticle (NP)-coated (immobilized) bacteria are an effective method for treating environmental pollution due to their multifarious benefits. This review collates a vast amount of existing literature on organic pollution treatment using NP-coated bacteria. We discuss the features of bacteria, NPs, and decoration techniques of NP-bacteria assemblies, with special attention given to the surface modification of NPs and connection mechanisms between NPs and cells. Furthermore, the performance of NP-coated bacteria was examined. We summarize the factors that affect bioremediation efficiency using coated bacteria, including pH, temperature, and agitation, and the possible mechanisms involving them are proposed. From future perspectives, suitable surface modification of NPs and wide application in real practice will make the NP-coated bacterial technology a viable treatment strategy.
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Affiliation(s)
- Jin-Ru Feng
- School of Urban Planning and Design, Shenzhen Graduate School, Peking University, Shenzhen, 518055, China
| | - Qing-Xin Deng
- School of Urban Planning and Design, Shenzhen Graduate School, Peking University, Shenzhen, 518055, China
| | - Shang-Kun Han
- School of Urban Planning and Design, Shenzhen Graduate School, Peking University, Shenzhen, 518055, China
| | - Hong-Gang Ni
- School of Urban Planning and Design, Shenzhen Graduate School, Peking University, Shenzhen, 518055, China.
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Yu M, Guo X, Zhao W, Zhang K. Single-molecule studies reveal the distinction of strong and weak polyelectrolytes in aqueous solutions. Phys Chem Chem Phys 2021; 23:26130-26134. [PMID: 34734610 DOI: 10.1039/d1cp03572j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Polyelectrolytes are an important class of functional polymers that have the advantages of both polymers and electrolytes due to the presence of charges, and have prospective applications in many fields. The charge of the backbone is an important factor affecting the properties of polyelectrolytes. Therefore, the complex interactions caused by the charges in polyelectrolyte solutions pose a challenge to the study of polyelectrolyte systems, and there is no consensus on the distinction between the behavior of strong and weak polyelectrolytes in solution. Based on single-molecule force spectroscopy (SMFS), the distinction of strong and weak polyelectrolytes is clarified for the first time at the single molecular level by comparing the single-chain elasticity in different environments. It is expected that the single-molecule study will provide the theoretical and experimental basis for the further application of polyelectrolytes.
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Affiliation(s)
- Miao Yu
- School of Mechanical Engineering, Sichuan University, Chengdu 610065, China. .,Innovation Method and Creative Design Key Laboratory of Sichuan Province, Chengdu 610065, China
| | - Xin Guo
- School of Mechanical Engineering, Sichuan University, Chengdu 610065, China. .,Innovation Method and Creative Design Key Laboratory of Sichuan Province, Chengdu 610065, China
| | - Wu Zhao
- School of Mechanical Engineering, Sichuan University, Chengdu 610065, China. .,Innovation Method and Creative Design Key Laboratory of Sichuan Province, Chengdu 610065, China
| | - Kai Zhang
- School of Mechanical Engineering, Sichuan University, Chengdu 610065, China. .,Innovation Method and Creative Design Key Laboratory of Sichuan Province, Chengdu 610065, China
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