1
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Wootton JM, Roper NJ, Morris CE, Maguire VE, Duff LC, Waddell PG, Whitwood AC, Gammons RJ, Miah AH, Lynam JM, Armstrong RJ, Unsworth WP. Stereoselective synthesis of atropisomeric amides enabled by intramolecular acyl transfer. Chem Sci 2025:d4sc05760k. [PMID: 39886439 PMCID: PMC11776508 DOI: 10.1039/d4sc05760k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2024] [Accepted: 01/19/2025] [Indexed: 02/01/2025] Open
Abstract
C-N atropisomeric amides are important compounds in medicinal chemistry and agrochemistry. Atropselective methods for their synthesis are therefore important. In this study, a novel strategy to make C-N atropisomeric amides based on intramolecular acyl transfer via a tethered Lewis basic pyridine or tertiary amine group is reported. The reactions operate under kinetic control and in most cases are highly atropselective, with the products isolable as pure, single diastereoisomers following chromatography. The kinetically favored atropisomer can also be isomerised into the alternative thermodynamically favored atropisomer upon heating. The kinetic and thermodynamic outcomes are supported by computational studies, while additional mechanistic studies support operation via initial fast acylation of the Lewis basic group, followed by rate-determining acyl transfer, which also enables control over the atropisomer formed.
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Affiliation(s)
- Jack M Wootton
- Department of Chemistry, University of York York YO10 5DD UK
| | - Natalie J Roper
- School of Natural and Environmental Sciences, Newcastle University Newcastle Upon Tyne NE1 7RU UK
| | - Catrin E Morris
- Department of Chemistry, University of York York YO10 5DD UK
| | | | - Lee C Duff
- Department of Chemistry, University of York York YO10 5DD UK
| | - Paul G Waddell
- School of Natural and Environmental Sciences, Newcastle University Newcastle Upon Tyne NE1 7RU UK
| | | | | | | | - Jason M Lynam
- Department of Chemistry, University of York York YO10 5DD UK
| | - Roly J Armstrong
- School of Natural and Environmental Sciences, Newcastle University Newcastle Upon Tyne NE1 7RU UK
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2
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Wootton JM, Tam JKF, Unsworth WP. Cascade ring expansion reactions for the synthesis of medium-sized rings and macrocycles. Chem Commun (Camb) 2024; 60:4999-5009. [PMID: 38655659 DOI: 10.1039/d4cc01303d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
This Feature Article discusses recent advances in the development of cascade ring expansion reactions for the synthesis of medium-sized rings and macrocycles. Cascade ring expansion reactions have much potential for use in the synthesis of biologically important medium-sized rings and macrocycles, most notably as they don't require high dilution conditions, which are commonly used in established end-to-end macrocyclisation methods. Operation by cascade ring expansion method can allow large ring products to be accessed via rearrangements that proceed exclusively by normal-sized ring cyclisation steps. Ensuring that there is adequate thermodynamic driving force for ring expansion is a key challenge when designing such methods, especially for the expansion of normal-sized rings into medium-sized rings. This Article is predominantly focused on methods developed in our own laboratory, with selected works by other groups also discussed. Thermodynamic considerations, mechanism, reaction design, route planning and future perspective for this field are all covered.
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Affiliation(s)
- Jack M Wootton
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
| | - Jerry K F Tam
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
| | - William P Unsworth
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
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3
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Yang Z, Arnoux M, Hazelard D, Hughes OR, Nabarro J, Whitwood AC, Fascione MA, Spicer CD, Compain P, Unsworth WP. Expanding the scope of the successive ring expansion strategy for macrocycle and medium-sized ring synthesis: unreactive and reactive lactams. Org Biomol Chem 2024; 22:2985-2991. [PMID: 38526035 DOI: 10.1039/d4ob00285g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2024]
Abstract
New methods are described that expand the scope of the Successive Ring Expansion (SuRE) with respect to synthetically challenging lactams. A protocol has been developed for use with 'unreactive' lactams, enabling SuRE reactions to be performed on subsrates that fail under previously established conditions. Ring expansion is also demonstarted on 'reactive' lactams derived from iminosugars for the first time. The new SuRE methods were used to prepare a diverse array of medium-sized and macrocyclic lactams and lactones, which were evaluted in an anti-bacterial assay against E. coli BW25113WT.
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Affiliation(s)
- Zhongzhen Yang
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
- Department of Pharmacy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Marion Arnoux
- Laboratoire d'Innovation Moléculaire et Applications (LIMA), Univ. de Strasbourg, Univ. de Haute-Alsace, CNRS (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 Rue Becquerel, 67000 Strasbourg, France.
| | - Damien Hazelard
- Laboratoire d'Innovation Moléculaire et Applications (LIMA), Univ. de Strasbourg, Univ. de Haute-Alsace, CNRS (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 Rue Becquerel, 67000 Strasbourg, France.
| | - Owen R Hughes
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
- York Biomedical Research Institute, University of York, Heslington, YO10 5DD, UK
| | - Joe Nabarro
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
- York Biomedical Research Institute, University of York, Heslington, YO10 5DD, UK
| | - Adrian C Whitwood
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
| | - Martin A Fascione
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
- York Biomedical Research Institute, University of York, Heslington, YO10 5DD, UK
| | - Christopher D Spicer
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
- York Biomedical Research Institute, University of York, Heslington, YO10 5DD, UK
| | - Philippe Compain
- Laboratoire d'Innovation Moléculaire et Applications (LIMA), Univ. de Strasbourg, Univ. de Haute-Alsace, CNRS (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 Rue Becquerel, 67000 Strasbourg, France.
| | - William P Unsworth
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.
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4
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Lee H, Kim J, Koh M. Medium-Sized Ring Expansion Strategies: Enhancing Small-Molecule Library Development. Molecules 2024; 29:1562. [PMID: 38611841 PMCID: PMC11013129 DOI: 10.3390/molecules29071562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Revised: 03/28/2024] [Accepted: 03/29/2024] [Indexed: 04/14/2024] Open
Abstract
The construction of a small molecule library that includes compounds with medium-sized rings is increasingly essential in drug discovery. These compounds are essential for identifying novel therapeutic agents capable of targeting "undruggable" targets through high-throughput and high-content screening, given their structural complexity and diversity. However, synthesizing medium-sized rings presents notable challenges, particularly with direct cyclization methods, due to issues such as transannular strain and reduced degrees of freedom. This review presents an overview of current strategies in synthesizing medium-sized rings, emphasizing innovative approaches like ring-expansion reactions. It highlights the challenges of synthesis and the potential of these compounds to diversify the chemical space for drug discovery, underscoring the importance of medium-sized rings in developing new bioactive compounds.
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Affiliation(s)
- Hwiyeong Lee
- Department of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan 46241, Republic of Korea;
| | - Jonghoon Kim
- Department of Chemistry and Integrative Institute of Basic Science, Soongsil University, Seoul 06978, Republic of Korea;
| | - Minseob Koh
- Department of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan 46241, Republic of Korea;
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5
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Zalessky I, Wootton JM, Tam JKF, Spurling DE, Glover-Humphreys WC, Donald JR, Orukotan WE, Duff LC, Knapper BJ, Whitwood AC, Tanner TFN, Miah AH, Lynam JM, Unsworth WP. A Modular Strategy for the Synthesis of Macrocycles and Medium-Sized Rings via Cyclization/Ring Expansion Cascade Reactions. J Am Chem Soc 2024; 146:5702-5711. [PMID: 38372651 PMCID: PMC10910531 DOI: 10.1021/jacs.4c00659] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 01/31/2024] [Accepted: 02/01/2024] [Indexed: 02/20/2024]
Abstract
Macrocycles and medium-sized rings are important in many scientific fields and technologies but are hard to make using current methods, especially on a large scale. Outlined herein is a strategy by which functionalized macrocycles and medium-sized rings can be prepared using cyclization/ring expansion (CRE) cascade reactions, without resorting to high dilution conditions. CRE cascade reactions are designed to operate exclusively via kinetically favorable 5-7-membered ring cyclization steps; this means that the problems typically associated with classical end-to-end macrocyclization reactions are avoided. A modular synthetic approach has been developed to facilitate the simple assembly of the requisite linear precursors, which can then be converted into an extremely broad range of functionalized macrocycles and medium-sized rings using one of nine CRE protocols.
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Affiliation(s)
- Illya Zalessky
- Department
of Chemistry, University of York, York, YO10 5DD U.K.
| | - Jack M. Wootton
- Department
of Chemistry, University of York, York, YO10 5DD U.K.
| | - Jerry K. F. Tam
- Department
of Chemistry, University of York, York, YO10 5DD U.K.
| | | | | | - James R. Donald
- Department
of Chemistry, University of York, York, YO10 5DD U.K.
| | - Will E. Orukotan
- Department
of Chemistry, University of York, York, YO10 5DD U.K.
| | - Lee C. Duff
- Department
of Chemistry, University of York, York, YO10 5DD U.K.
| | - Ben J. Knapper
- Department
of Chemistry, University of York, York, YO10 5DD U.K.
| | | | | | | | - Jason M. Lynam
- Department
of Chemistry, University of York, York, YO10 5DD U.K.
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6
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Orukotan WE, Palate KY, Pogrányi B, Bobinski P, Epton RG, Duff L, Whitwood AC, Grogan G, Lynam JM, Unsworth WP. Divergent Cascade Ring-Expansion Reactions of Acryloyl Imides. Chemistry 2024; 30:e202303270. [PMID: 37987097 DOI: 10.1002/chem.202303270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 11/16/2023] [Accepted: 11/21/2023] [Indexed: 11/22/2023]
Abstract
Macrocyclic and medium-sized ring ketones, lactones and lactams can all be made from common acryloyl imide starting materials through divergent, one-pot cascade ring-expansion reactions. Following either conjugate addition with an amine or nitromethane, or osmium(VIII)-catalysed dihydoxylation, rearrangement through a four-atom ring expansion takes place spontaneously to form the ring expanded products. A second ring expansion can also be performed following a second iteration of imide formation and alkene functionalisation/ring expansion. In the dihydroxylation series, three- or four-atom ring expansion can be performed selectively, depending on whether the reaction is under kinetic or thermodynamic control.
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Affiliation(s)
- Will E Orukotan
- Department of Chemistry, University of York, York, YO10 5DD, UK
| | | | - Balázs Pogrányi
- Department of Chemistry, University of York, York, YO10 5DD, UK
| | - Philipp Bobinski
- Organisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Ryan G Epton
- Department of Chemistry, University of York, York, YO10 5DD, UK
| | - Lee Duff
- Department of Chemistry, University of York, York, YO10 5DD, UK
| | | | - Gideon Grogan
- Department of Chemistry, University of York, York, YO10 5DD, UK
| | - Jason M Lynam
- Department of Chemistry, University of York, York, YO10 5DD, UK
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7
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Narmon AS, van Slagmaat CAMR, De Wildeman SMA, Dusselier M. Sustainable Polythioesters via Thio(no)lactones: Monomer Synthesis, Ring-Opening Polymerization, End-of-Life Considerations, and Industrial Perspectives. CHEMSUSCHEM 2023; 16:e202202276. [PMID: 36649173 DOI: 10.1002/cssc.202202276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 01/16/2023] [Accepted: 01/17/2023] [Indexed: 05/06/2023]
Abstract
As the environmental effects of plastics are of ever greater concern, the industry is driven towards more sustainable polymers. Besides sustainability, our fast-developing society imposes the need for highly versatile materials. Whereas aliphatic polyesters (PEs) are widely adopted and studied as next-generation biobased and (bio)degradable materials, their sulfur-containing analogs, polythioesters (PTEs), only recently gained attention. Nevertheless, the introduction of S atoms is known to often enhance thermal, mechanical, electrochemical, and optical properties, offering prospects for broad applicability. Furthermore, thanks to their thioester-based backbone, PTEs are inherently susceptible to degradation, giving them a high sustainability potential. The key route to PTEs is through ring-opening polymerization (ROP) of thio(no)lactones. This Review critically discusses the (potential) sustainability of the most relevant state-of-the-art in every step from sulfur source to end-of-life treatment options of PTEs, obtained through ROP of thio(no)lactones. The benefits and drawbacks of PTEs versus PEs are highlighted, including their industrial perspective.
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Affiliation(s)
- An Sofie Narmon
- Department of Microbial and Molecular Systems, Center for Sustainable Catalysis and Engineering (CSCE), KU Leuven, Celestijnenlaan 200F, 3001, Leuven, Belgium
- B4Plastics BV, IQ-Parklaan 2 A, 3650, Dilsen-Stokkem, Belgium
| | | | | | - Michiel Dusselier
- Department of Microbial and Molecular Systems, Center for Sustainable Catalysis and Engineering (CSCE), KU Leuven, Celestijnenlaan 200F, 3001, Leuven, Belgium
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8
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Yang Z, Zalessky I, Epton RG, Whitwood AC, Lynam JM, Unsworth WP. Ring Expansion Strategies for the Synthesis of Medium Sized Ring and Macrocyclic Sulfonamides. Angew Chem Int Ed Engl 2023; 62:e202217178. [PMID: 36716014 DOI: 10.1002/anie.202217178] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 01/16/2023] [Accepted: 01/30/2023] [Indexed: 01/31/2023]
Abstract
Two new ring expansion strategies are reported for the synthesis of medium sized ring and macrocyclic sulfonamides. Both methods can be performed without using classical protecting groups, with the key ring expansion step initiated by nitro reduction and amine conjugate addition respectively. Each method can be used to make diversely functionalised cyclic sulfonamides in good to excellent yields, in a range of ring sizes. The ring size dependency of the synthetic reactions is in good agreement with the outcomes modelled by Density Functional Theory calculations.
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Affiliation(s)
- Zhongzhen Yang
- Department of Chemistry, University of York, York, YO10 5DD, UK
| | - Illya Zalessky
- Department of Chemistry, University of York, York, YO10 5DD, UK
| | - Ryan G Epton
- Department of Chemistry, University of York, York, YO10 5DD, UK
| | | | - Jason M Lynam
- Department of Chemistry, University of York, York, YO10 5DD, UK
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9
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A Lewis Acid-Promoted Michael Addition and Ring-Expansion Cascade for the Construction of Nitrogen-Containing Medium-Sized Rings. Molecules 2023; 28:molecules28041650. [PMID: 36838638 PMCID: PMC9966210 DOI: 10.3390/molecules28041650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Revised: 02/03/2023] [Accepted: 02/04/2023] [Indexed: 02/11/2023] Open
Abstract
A Lewis acid-promoted annulation of azadienes and cyclobutamines was developed. This reaction proceeded through Michael addition and ring-expansion cascade, affording the corresponding nitrogen-containing medium-sized rings with a broad scope in moderate to high yields. The catalytic asymmetric version of this reaction has also been explored using a chiral base.
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10
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Lavit K, Sapegin A, Linnik S, Ryazantsev M, Krasavin M. Steric Push Towards the [n+3] Hydrated Imidazoline Ring Expansion (HIRE) of Dibenzo[1.4]oxazepines and Thiazepines. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Ksenia Lavit
- Saint Petersburg State University: Sankt-peterburgskij gosudarstvennyj universitet Chemistry RUSSIAN FEDERATION
| | - Alexander Sapegin
- Saint Petersburg State University Institute of Chemistry: Sankt-Peterburgskij gosudarstvennyj universitet Institut himii Chemistry RUSSIAN FEDERATION
| | - Stanislav Linnik
- Saint Petersburg Academic University: Sankt-Peterburgskij nacional'nyj issledovatel'skij Akademiceskij universitet Rossijskoj akademii nauk Nanobiotechnology RUSSIAN FEDERATION
| | - Mikhail Ryazantsev
- Saint Petersburg Academic University: Sankt-Peterburgskij nacional'nyj issledovatel'skij Akademiceskij universitet Rossijskoj akademii nauk Nanobiotechnology RUSSIAN FEDERATION
| | - Mikhail Krasavin
- Saint Petersburg State University Chemistry 26 Universitetskyi Prospekt 198504 Peterhof RUSSIAN FEDERATION
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11
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Unsworth WP, Stephens TC. Strategies for the Synthesis of Heterocyclic Macrocycles and Medium‐Sized Rings. HETEROCYCLES 2022. [DOI: 10.1002/9783527832002.ch3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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12
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Palate KY, Yang Z, Whitwood AC, Unsworth WP. Synthesis of medium-ring lactams and macrocyclic peptide mimetics via conjugate addition/ring expansion cascade reactions. RSC Chem Biol 2022; 3:334-340. [PMID: 35359493 PMCID: PMC8905531 DOI: 10.1039/d1cb00245g] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 02/08/2022] [Indexed: 11/30/2022] Open
Abstract
A novel conjugate addition/ring expansion (CARE) cascade reaction sequence is reported that enables medium-sized ring and macrocyclic bis-lactams to be prepared from primary amines and cyclic imides. The reactions are simple to perform, generally high yielding, and very broad in scope, especially with respect to the primary amine component. CARE reactions can also be performed iteratively, enabling β-peptoid-based macrocyclic peptide mimetics to be ‘grown’ via well controlled, sequential 4-atom ring expansion reactions, with the incorporation of varied functionalised amines during each iteration. A conjugate addition/ring expansion (CARE) cascade reaction sequence is reported that enables medium-sized ring and macrocyclic bis-lactams to be prepared from primary amines and cyclic imides.![]()
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Affiliation(s)
- Kleopas Y Palate
- Department of Chemistry, University of York, Heslington York YO10 5DD UK
| | - Zhongzhen Yang
- Department of Chemistry, University of York, Heslington York YO10 5DD UK
| | - Adrian C Whitwood
- Department of Chemistry, University of York, Heslington York YO10 5DD UK
| | - William P Unsworth
- Department of Chemistry, University of York, Heslington York YO10 5DD UK
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13
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Ahmed AAM, Mekky AEM, Sanad SMH. Effective synthesis of new benzo‐fused macrocyclic and thiamacrocyclic dilactams and related pyrazolo‐fused macrocycles. J Heterocycl Chem 2021. [DOI: 10.1002/jhet.4383] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Ahmed A. M. Ahmed
- Chemistry Department, Faculty of Science Cairo University Giza Egypt
- Common First Year Deanship Jouf University Sakaka Saudi Arabia
| | - Ahmed E. M. Mekky
- Chemistry Department, Faculty of Science Cairo University Giza Egypt
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