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Pradhan BL, Lodhi L, Dey KK, Ghosh M. Analyzing atomic scale structural details and nuclear spin dynamics of four macrolide antibiotics: erythromycin, clarithromycin, azithromycin, and roxithromycin. RSC Adv 2024; 14:17733-17770. [PMID: 38832242 PMCID: PMC11145140 DOI: 10.1039/d4ra00718b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Accepted: 05/26/2024] [Indexed: 06/05/2024] Open
Abstract
The current investigation centers on elucidating the intricate molecular architecture and dynamic behavior of four macrolide antibiotics, specifically erythromycin, clarithromycin, azithromycin, and roxithromycin, through the application of sophisticated solid-state nuclear magnetic resonance (SSNMR) methodologies. We have measured the principal components of chemical shift anisotropy (CSA) parameters, and the site-specific spin-lattice relaxation time at carbon nuclei sites. To extract the principal components of CSA parameters, we have employed 13C 2DPASS CP-MAS SSNMR experiments at two different values of magic angle spinning (MAS) frequencies, namely 2 kHz and 600 Hz. Additionally, the spatial correlation between 13C and 1H nuclei has been investigated using 1H-13C frequency switched Lee-Goldburg heteronuclear correlation (FSLGHETCOR) experiment at a MAS frequency of 24 kHz. Our findings demonstrate that the incorporation of diverse functional groups, such as the ketone group and oxime group with the lactone ring, exerts notable influences on the structure and dynamics of the macrolide antibiotic. In particular, we have observed a significant decrease in the spin-lattice relaxation time of carbon nuclei residing on the lactone ring, desosamine, and cladinose in roxithromycin, compared to erythromycin. Overall, our findings provide detailed insight into the relationship between the structure and dynamics of macrolide antibiotics, which is eventually correlated with their biological activity. This knowledge can be utilized to develop new and more effective drugs by providing a rational basis for drug discovery and design.
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Affiliation(s)
- Bijay Laxmi Pradhan
- Physics Section, Mahila Maha Vidyalaya, Banaras Hindu University Varanasi-221005 Uttar-Pradesh India
- Department of Physics, Institute of Science, Banaras Hindu University Varanasi-221005 Uttar-Pradesh India
| | - Lekhan Lodhi
- Department of Zoology, Dr Harisingh Gour Central University Sagar-470003 Madhya-Pradesh India
| | - Krishna Kishor Dey
- Department of Physics, Dr Harisingh Gour Central University Sagar-470003 Madhya-Pradesh India
| | - Manasi Ghosh
- Physics Section, Mahila Maha Vidyalaya, Banaras Hindu University Varanasi-221005 Uttar-Pradesh India
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2
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Kayani KF, Rahim MK, Mohammed SJ, Ahmed HR, Mustafa MS, Aziz SB. Recent Progress in Folic Acid Detection Based on Fluorescent Carbon Dots as Sensors: A Review. J Fluoresc 2024:10.1007/s10895-024-03728-3. [PMID: 38625574 DOI: 10.1007/s10895-024-03728-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 04/11/2024] [Indexed: 04/17/2024]
Abstract
Folic acid (FA) is a water-soluble vitamin found in diverse natural sources and is crucial for preserving human health. The risk of health issues due to FA deficiency underscores the need for a straightforward and sensitive FA detection methodology. Carbon dots (CDs) have gained significant attention owing to their exceptional fluorescence performance, biocompatibility, and easy accessibility. Consequently, numerous research studies have concentrated on developing advanced CD fluorescent probes to enable swift and precise FA detection. Despite these efforts, there is still a requirement for a thorough overview of the efficient synthesis of CDs and their practical applications in FA detection to further promote the widespread use of CDs. This review paper focuses on the practical applications of CD sensors for FA detection. It begins with an in-depth introduction to FA and CDs. Following that, based on various synthetic approaches, the prepared CDs are classified into diverse detection methods, such as single sensing, visual detection, and electrochemical methods. Furthermore, persistent challenges and potential avenues are highlighted for future research to provide valuable insights into crafting effective CDs and detecting FA.
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Affiliation(s)
- Kawan F Kayani
- Department of Chemistry, College of Science, University of Sulaimani, Qliasan Street,, Sulaymaniyah City, Kurdistan Region, 46002, Iraq.
- Department of Chemistry, College of Science, Charmo University, Chamchamal/Sulaimani, Kurdistan Region, 46023, Iraq.
- Department of Pharmacy, Kurdistan Technical Institute, Sulaymaniyah City, Iraq.
| | - Mohammed K Rahim
- Department of Chemistry, College of Science, University of Sulaimani, Qliasan Street,, Sulaymaniyah City, Kurdistan Region, 46002, Iraq
| | - Sewara J Mohammed
- Anesthesia department, College of Health Sciences, Cihan University Sulaimaniya, Sulaimaniya, Kurdistan Region, 46001, Iraq
- Research and Development Center, University of Sulaimani, Qlyasan Street, Kurdistan Regional Government, Sulaymaniyah, 46001, Iraq
| | - Harez Rashid Ahmed
- Department of Chemistry, College of Science, University of Sulaimani, Qliasan Street,, Sulaymaniyah City, Kurdistan Region, 46002, Iraq
- College of Science, Department of Medical Laboratory Science, Komar University of Science and Technology, Sulaymaniyah, 46001, Iraq
| | - Muhammad S Mustafa
- Department of Chemistry, College of Science, University of Sulaimani, Qliasan Street,, Sulaymaniyah City, Kurdistan Region, 46002, Iraq
| | - Shujahadeen B Aziz
- Research and Development Center, University of Sulaimani, Qlyasan Street, Kurdistan Regional Government, Sulaymaniyah, 46001, Iraq
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3
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Pradhan B, Yadav JP, Lodhi L, Sen P, Dey KK, Ghosh M. Atomic-Scale Resolution Insights into Structural and Dynamic Differences between Ofloxacin and Levofloxacin. ACS OMEGA 2023; 8:24093-24105. [PMID: 37426250 PMCID: PMC10323956 DOI: 10.1021/acsomega.3c03406] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Accepted: 06/09/2023] [Indexed: 07/11/2023]
Abstract
This study employs advanced solid-state NMR techniques to investigate the atomic-level structure and dynamics of two enantiomers: ofloxacin and levofloxacin. The investigation focuses on critical attributes, such as the principal components of the chemical shift anisotropy (CSA) tensor, the spatial proximity of 1H and 13C nuclei, and site-specific 13C spin-lattice relaxation time, to reveal the local electronic environment surrounding specific nuclei. Levofloxacin, the levo-isomer of ofloxacin, exhibits higher antibiotic efficacy than its counterpart, and the dissimilarities in the CSA parameters indicate significant differences in the local electronic configuration and nuclear spin dynamics between the two enantiomers. Additionally, the study employs the 1H-13C frequency-switched Lee-Goldburg heteronuclear correlation (FSLGHETCOR) experiment to identify the presence of heteronuclear correlations between specific nuclei (C15 and H7 nuclei and C13 and H12 nuclei) in ofloxacin but not in levofloxacin. These observations offer insights into the link between bioavailability and nuclear spin dynamics, underscoring the significance of NMR crystallography approaches in advanced drug design.
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Affiliation(s)
- Bijay
Laxmi Pradhan
- Department
of Physics, Institute of Science, Banaras
Hindu University, Varanasi 221005, Uttar-Pradesh, India
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi 221005, Uttar-Pradesh, India
| | - Jai Prakash Yadav
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi 221005, Uttar-Pradesh, India
| | - Lekhan Lodhi
- Department
of Zoology, Dr. Harisingh Gour Central University, Sagar 470003, Madhya-Pradesh, India
| | - Prince Sen
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar 470003, Madhya-Pradesh, India
| | - Krishna Kishor Dey
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar 470003, Madhya-Pradesh, India
| | - Manasi Ghosh
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi 221005, Uttar-Pradesh, India
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4
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Yadav JP, Lodhi L, Fatma T, Dey KK, Ghosh M. Investigation of the Influence of Various Functional Groups on the Dynamics of Glucocorticoids. ACS OMEGA 2022; 7:43190-43209. [PMID: 36467925 PMCID: PMC9713872 DOI: 10.1021/acsomega.2c05892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/11/2022] [Accepted: 11/02/2022] [Indexed: 06/17/2023]
Abstract
The basic configuration of glucocorticoid consists of four-fused rings associated with one cyclohexadienone ring, two cyclohexane rings, and one cyclopentane ring. The ways the structure and dynamics of five glucocorticoids (prednisone, prednisolone, prednisolone acetate, methylprednisolone, and methylprednisolone acetate) are altered because of the substitution of various functional groups with these four-fused rings are studied thoroughly by applying sophisticated solid-state nuclear magnetic resonance (NMR) methodologies. The biological activities of these glucocorticoids are also changed because of the attachment of various functional groups with these four-fused rings. The substitution of the hydroxyl group (with the C11 atom of the cyclohexane ring) in place of the keto group enhances the potential of the glucocorticoid to cross the cellular membrane. As a result, the bioavailability of prednisolone (the hydroxyl group is attached with the C11 atom of the cyclohexane ring) is increased compared to prednisone (the keto group is attached with the C11 atom of cyclohexane rings). Another notable point is that the spin-lattice relaxation rate at crystallographically distinct carbon nuclei sites of prednisolone is increased compared to that of the prednisone, which implies that the motional degrees of freedom of glucocorticoid is increased because of the substitution of the hydroxyl group in place of the keto group of the cyclohexane ring. The attachment of the methyl group with the C6 atom of cyclohexane rings further reduces the spin-lattice relaxation time at crystallographically distinct carbon nuclei sites of glucocorticoid and its bioactivity is also increased. By comparing the spin-lattice relaxation time and the local correlation time at crystallographically different carbon nuclei sites of three steroids prednisone, prednisolone, and methylprednisolone, it is observed that both the spin-lattice relaxation time and the local correlation time gradually decrease at each crystallographically distinct carbon nuclei sites when we move from prednisone to prednisolone to methyl-prednisolone. On the other hand, if we compare the same for prednisolone, prednisolone acetate, and methylprednisolone acetate, then we also observe that both the spin-lattice relaxation time and the local-correlation time gradually decrease from prednisolone to prednisolone acetate to methylprednisolone acetate for all chemically different carbon nuclei. It is also noticeable that both the spin-lattice relaxation time and the local-correlation time gradually decrease from prednisone to prednisolone to prednisolone acetate to methylprednisolone to methylprednisolone acetate for most of the carbon nuclei sites. From in silico analysis, it is also revealed that the bioavailability and efficacy of the glucocorticoid increase from prednisone to prednisolone to prednisolone acetate to methylprednisolone to methylprednisolone acetate. Hence, it can be concluded that the biological activity and the motional degrees of freedom of the glucocorticoids are highly correlated. These types of studies provide a clear picture of the structure-activity relationship of the drug molecules, which will enlighten the path of developing highly potent glucocorticoids with minimum side effects. Another important aspect of these types of studies is to provide information about the electronics configuration and nuclear spin dynamics at crystallographically different carbon nuclei sites of five glucocorticoids, which will enrich the field of "NMR crystallography".
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Affiliation(s)
- Jai Prakash Yadav
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi, Uttar Pradesh221005, India
| | - Lekhan Lodhi
- Department
of Zoology, Dr. Harisingh Gour Central University, Sagar, Madhya Pradesh470003, India
| | - Tamseel Fatma
- Department
of Bioinformatics, Mahila Maha Vidyalaya, Banaras Hindu University, Varanasi, Uttar Pradesh221005, India
| | - Krishna Kishor Dey
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar, Madhya Pradesh470003, India
| | - Manasi Ghosh
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi, Uttar Pradesh221005, India
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5
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Magri VR, Rocha MA, de Matos CS, Petersen PAD, Leroux F, Petrilli HM, Constantino VRL. Folic acid and sodium folate salts: Thermal behavior and spectroscopic (IR, Raman, and solid-state 13C NMR) characterization. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 273:120981. [PMID: 35219274 DOI: 10.1016/j.saa.2022.120981] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Revised: 01/24/2022] [Accepted: 01/29/2022] [Indexed: 06/14/2023]
Abstract
Folic acid (FA; vitamin B9) and its associated sodium salts, strongly relevant for many scientific and technological applications - from nutrition to pharmacology and nanomedicine, suffer from a lack of characterization combining experimental and theoretical. In this work, a spectroscopic investigation of FA and its synthesized sodium salts in the form of dianion (Na2HFol) or trianion (Na3Fol) was scrutinized in their solid state. The spectroscopic (infrared, Raman, and solid state 13C-nuclear magnetic resonance) data interpretation was supported by theoretical calculations using the Density Functional Theory (DFT). Additionally, the compounds were characterized by UV-VIS diffuse-reflectance spectroscopy, combined thermal analysis (TG/DTG-DSC) coupled to mass spectrometry, and X-ray diffractometry. The main signatures of each species were identified, as well as the influence of the protonation level on their physicochemical properties. These distinct properties for the three compounds are mainly based on signals assigned to glutamic acid (glutamate) and pterin (neutral or anionic) moieties. This work should help developing new products based on FA or its anionic forms, such as theragnostic/drug delivery systems, supramolecular structures, nanocarbons, or metal complexes.
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Affiliation(s)
- Vagner R Magri
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, Av. Prof. Lineu Prestes 748, CEP 05508-000 São Paulo, SP, Brazil
| | - Michele A Rocha
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, Av. Prof. Lineu Prestes 748, CEP 05508-000 São Paulo, SP, Brazil
| | - Caroline S de Matos
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, Av. Prof. Lineu Prestes 748, CEP 05508-000 São Paulo, SP, Brazil
| | - Philippe A D Petersen
- Departamento de Física de Materiais e Mecânica, Instituto de Física, Universidade de São Paulo, Rua do Matão 1371, CEP 05508-090 São Paulo, SP, Brazil
| | - Fabrice Leroux
- Université Clermont Auvergne, Institut de Chimie de Clermont-Ferrand, BP 10448, F-63000 Clermont-Ferrand, France; CNRS, UMR 6296, ICCF, F-63178 Aubiere, France
| | - Helena M Petrilli
- Departamento de Física de Materiais e Mecânica, Instituto de Física, Universidade de São Paulo, Rua do Matão 1371, CEP 05508-090 São Paulo, SP, Brazil
| | - Vera R L Constantino
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, Av. Prof. Lineu Prestes 748, CEP 05508-000 São Paulo, SP, Brazil.
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6
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Dey KK, Deshmukh MM, Ghosh M. A Description of the Local Structure and Dynamics of Ketoconazole Molecule by Solid‐State NMR Measurements and DFT Calculations: Proposition for NMR Crystallography. ChemistrySelect 2021. [DOI: 10.1002/slct.202102622] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Krishna Kishor Dey
- Department of Physics Dr. Harisingh Gour Central University Sagar 470003, Madhya-Pradesh India
| | - Milind M. Deshmukh
- Department of Chemistry Dr. Harisingh Gour Central University Sagar 470003, Madhya-Pradesh India
| | - Manasi Ghosh
- Physics Section MMV Banaras Hindu University Varanasi 221005, Uttar-Pradesh India
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7
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Dey K, Lodhi L, Ghosh M. Study of the Variation of the Electronic Distribution and Motional Dynamics of Two Independent Molecules of an Asymmetric Unit of Atorvastatin Calcium by Solid-State NMR Measurements. ACS OMEGA 2021; 6:22752-22764. [PMID: 34514246 PMCID: PMC8427786 DOI: 10.1021/acsomega.1c03095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
Significant changes in the spin-lattice time and chemical shift anisotropy (CSA) parameters are observed in two independent molecules of an asymmetric unit of atorvastatin calcium (ATC-I) (which is referred to as "a"- and "b"-type molecules by following Wang et al.). The longitudinal magnetization decay curve is fitted by two exponentials-one with longer relaxation time and another with shorter relaxation time for most of the carbon nuclei sites. The local correlation time also varies significantly. This is the experimental evidence of the coexistence of two different kinds of motional degrees of freedom within ATC-I molecule. The solubility and bioavailability of the drug molecule are enhanced due to the existence of two different kinds of dynamics. Hence, the macroscopic properties like solubility and bioavailability of a drug molecule are highly correlated with its microscopic properties. The motional degrees of freedom of "a"- and "b"-type molecules are also varied remarkably at certain carbon nuclei sites. This is the first time the change in the molecular dynamics of two independent molecules of an asymmetric unit of atorvastatin calcium is quantified using solid-state NMR methodology. These types of studies, in which the chemical shift anisotropy (CSA) parameters and spin-lattice relaxation time provide information about the change in electronic distribution and the spin dynamics at the various crystallographic location of the drug molecule, will enrich the field "NMR crystallography". It will also help us to understand the electronic distribution around a nucleus and the nuclear spin dynamics at various parts of the molecule, which is essential to develop the strategies for the administration of the drug.
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Affiliation(s)
- Krishna
Kishor Dey
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar 470003, Madhya Pradesh, India
| | - Lekhan Lodhi
- Department
of Zoology, Dr. Harisingh Gour Central University, Sagar 470003, Madhya Pradesh, India
| | - Manasi Ghosh
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi 221005, Uttar Pradesh, India
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8
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Dey KK, Gayen S, Ghosh M. Structure and dynamics of sodium alginate as elucidated by chemical shift anisotropy and site-specific spin-lattice relaxation time measurements. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2021; 50:963-977. [PMID: 34254174 DOI: 10.1007/s00249-021-01559-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 03/31/2021] [Accepted: 06/26/2021] [Indexed: 11/29/2022]
Abstract
The biocompatible, biodegradable, linear copolymer sodium alginate is fabricated from [Formula: see text] linked [Formula: see text]-D-mannuronic acid (M block) and [Formula: see text]-L-guluronic acid (G-block). It has wide applications in drug delivery, cell encapsulation, and commercial application in the textile, cosmetics, paper, food, biomedical, and pharmaceutical industries. The structure and dynamics of sodium alginate were here investigated by measuring chemical shift anisotropy (CSA) parameters, spin-lattice relaxation time, and molecular correlation time. The principal components of the CSA tensor were determined by two-dimensional phase-adjusted spinning sideband (2DPASS) cross-polarization magic angle spinning (CP-MAS) SSNMR. The alternating M and G blocks of both equatorial and axial links are associated with greater overall flexibility. The molecular correlation time of the carboxyl carbon of both G and M blocks is faster than for the anomeric carbon and pyranose carbon. This is further experimental evidence of the coexistence of two different dynamics within the polysaccharide chains of sodium alginate, which was previously established by 1H-13C dipolar profile analysis. The relaxation time of the para-crystalline region of sodium alginate is comparable with that of chitosan, but it is much shorter than that of cellulose and chitin. The order of the molecular correlation time of sodium alginate and chitosan is also the same. Hence, it can be concluded that sodium alginate exhibits greater flexibility than cellulose and chitin. These types of investigation into the local electronic configuration and nuclear spin dynamics at various carbon nuclei sites of the biopolymer at atomic-scale resolution will help in the design of biomimetic materials.
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Affiliation(s)
- Krishna Kishor Dey
- Department of Physics, Dr. Harisingh Gour Central University, Sagar, 470003, India
| | - Shovanlal Gayen
- Department of Pharmaceutical Sciences, Dr. Harisingh Gour Central University, Sagar, 470003, India
| | - Manasi Ghosh
- Physics Section, MMV, Banaras Hindu University, Varanasi, 221005, India.
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Bhowal R, Balaraman AA, Ghosh M, Dutta S, Dey KK, Chopra D. Probing Atomistic Behavior To Unravel Dielectric Phenomena in Charge Transfer Cocrystals. J Am Chem Soc 2020; 143:1024-1037. [DOI: 10.1021/jacs.0c11459] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Rohit Bhowal
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, Madhya Pradesh, India
| | - Anina Anju Balaraman
- Materials Science Division, Council of Scientific and Industrial Research, National Aerospace Laboratories, Kodihalli, Bengaluru 560017, Karnataka, India
| | - Manasi Ghosh
- Physics Section, Mahila Maha Vidyalaya, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Soma Dutta
- Materials Science Division, Council of Scientific and Industrial Research, National Aerospace Laboratories, Kodihalli, Bengaluru 560017, Karnataka, India
| | - Krishna Kishor Dey
- Department of Physics, Dr. Harisingh Gour Central University, Sagar 470003, Madhya Pradesh, India
| | - Deepak Chopra
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, Madhya Pradesh, India
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Dey K, Ghosh M. Investigation of the Structure and Dynamics of Antiviral Drug Adefovir Dipivoxil by Site-Specific Spin-Lattice Relaxation Time Measurements and Chemical Shift Anisotropy Tensor Measurements. ACS OMEGA 2020; 5:29373-29381. [PMID: 33225168 PMCID: PMC7676337 DOI: 10.1021/acsomega.0c04205] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Accepted: 10/26/2020] [Indexed: 06/11/2023]
Abstract
Adefovir is regarded as a potential antiviral agent. However, it cannot be considered as a valuable drug candidate due to its high polarity that limits its permeability across the human intestinal mucosa. When the ribose phosphate group of adefovir is replaced by the isopolar phosphonomethyl ether functionality, it neutralizes the negative charge of the drug. This makes the drug lipid-soluble and potent to diffuse across the cell membrane. The prodrug adefovir dipivoxil is regarded as a potent antiviral drug against hepatitis B virus (HBV), human immunodeficiency virus (HIV), Rauscher murine leukemia virus (R-MuLV), murine cytomegalovirus (MCMV), herpes simplex virus (HSV), simian immunodeficiency virus (SIV), and feline immunodeficiency virus (FIV). The correlation between the structure and the dynamics of adefovir dipivoxil is determined by measuring the principal components of chemical shift anisotropy (CSA) tensor, site-specific spin-lattice relaxation time, and molecular correlation time at crystallographically different carbon nuclei sites. The CSA parameters, spin-lattice relaxation time, and molecular correlation time of phosphorous nucleus of the organophosphate group of adefovir dipivoxil molecule are also determined. The spin-lattice relaxation time of carbon nuclei varies from 1 to 107 s. The range of molecular correlation time also varies from 10-4 to 10-8 s. These remarkable diversities of motional dynamics of the molecules imply that there exist various motional degrees of freedom within this valuable drug and these motional degrees of freedom are independent of each other, which may be the reason for the biological activities exhibited by the drug. The correlation between structure and dynamics of such an important antiviral drug adefovir dipivoxil can be visualized by these types of extensive spectroscopic measurements, which will enlighten the path of inventing advanced medicine in the pharmaceutical industry, and it will also illuminate the understanding of the structure-activity relationships of antiviral drug.
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Affiliation(s)
- Krishna
Kishor Dey
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar, 470003 MP, India
| | - Manasi Ghosh
- Physics
Section, MMV, Banaras Hindu University, Varanasi, 221005 UP, India
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11
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Dey KK, Ghosh M. Determination of the correlation between the structure and dynamics of deflazacort by solid state NMR measurements. NEW J CHEM 2020. [DOI: 10.1039/d0nj03418e] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The correlation between the structure and dynamics of glucocorticoid deflazacort is determined by a 2DPASS CP-MAS SSNMR experiment and 13C spin–lattice relaxation time by a Torchia CP experiment.
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Affiliation(s)
- Krishna Kishor Dey
- Department of Physics
- Dr Harisingh Gour Central University
- Sagar-470003
- India
| | - Manasi Ghosh
- Physics Section
- MMV
- Banaras Hindu University
- Varanasi-221005
- India
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12
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Dey KK, Ghosh M. Understanding the structure and dynamics of anti-inflammatory corticosteroid dexamethasone by solid state NMR spectroscopy. RSC Adv 2020; 10:37564-37575. [PMID: 35521289 PMCID: PMC9057149 DOI: 10.1039/d0ra05474g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Accepted: 10/01/2020] [Indexed: 12/31/2022] Open
Abstract
For decades corticosteroid dexamethasone has been applied as an anti-inflammatory, immunosuppressant, and decongestant, in the prevention of postoperative nausea and vomiting (PONV), and for auto-immune diseases, allergic reactions, total hip arthroplasty (THA), and cancer. Recently in vitro studies suggested that it may be beneficial to deal with the COVID-19 pandemic. This important drug molecule was investigated by solid state NMR measurements to provide more complete features of its structure and dynamics at atomic scale resolution. The spin–lattice relaxation time at twenty-two different carbon sites of dexamethasone was determined by the Torchia CP method. The principle components of the chemical shift anisotropy tensor were determined by 13C two-dimensional phase adjusted spinning sideband (2DPASS) cross-polarization magic angle spinning (CP-MAS) solid state NMR experiments. The molecular correlation time at twenty-two crystallographically different carbon sites of dexamethasone was calculated by considering that the spin–lattice relaxation mechanism of the 13C nucleus is mainly governed by the chemical shift anisotropy interaction and the heteronuclear dipole–dipole coupling. The spin–lattice relaxation time of carbon nuclei resides on ‘A’, ‘B’, ‘C’, and ‘D’ rings and the side-chain of dexamethasone is quite large, which implies the close-packed arrangement of the molecule. The difference in molecular correlation time at various regions of the molecule demonstrates the existence of different degrees of freedom within the molecule. This may be the reason for the various biological activities exhibited by the molecule. These types of detailed features of the structure and dynamics of such an important drug with multiple biological activities are necessary to develop the advanced medicine and it will also help to understand the structure–activity relationships of corticosteroid. The structure and dynamics of dexamethasone is determined by measuring CSA tensor, site-specific spin–lattice relaxation time.![]()
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Affiliation(s)
- Krishna Kishor Dey
- Department of Physics
- Dr. Harisingh Gour Central University
- Sagar-470003
- India
| | - Manasi Ghosh
- Physics Section
- MMV
- Banaras Hindu University
- Varanasi-221005
- India
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Dey KK, Ghosh M. Determination of chemical shift anisotropy tensor and molecular correlation time of proton pump inhibitor omeprazole by solid state NMR measurements. NEW J CHEM 2020. [DOI: 10.1039/d0nj01827a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The correlation between the structure and dynamics of omeprazole is portrayed by extracting CSA parameters through the 13C 2DPASS CP-MAS SSNMR experiment, site specific spin–lattice relaxation time by Torchia CP experiment, and calculation of the molecular correlation time.
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Affiliation(s)
- Krishna Kishor Dey
- Department of Physics
- Dr. Harisingh Gour Central University
- Sagar-470003
- India
| | - Manasi Ghosh
- Department of Physics (MMV Section)
- Banaras Hindu University
- Varanasi-221005
- India
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