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Zhao X, Liu S, Que H, Huang M, Zhu Q. ADFSNet: An Adaptive Domain Feature Separation Network for the Classification of Wheat Seed Using Hyperspectral Images. SENSORS (BASEL, SWITZERLAND) 2023; 23:8116. [PMID: 37836946 PMCID: PMC10575222 DOI: 10.3390/s23198116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 09/23/2023] [Accepted: 09/25/2023] [Indexed: 10/15/2023]
Abstract
Wheat seed classification is a critical task for ensuring crop quality and yield. However, the characteristics of wheat seeds can vary due to variations in climate, soil, and other environmental factors across different years. Consequently, the present classification model is no longer adequate for accurately classifying novel samples. To tackle this issue, this paper proposes an adaptive domain feature separation (ADFS) network that utilizes hyperspectral imaging techniques for cross-year classification of wheat seed varieties. The primary objective is to improve the generalization ability of the model at a minimum cost. ADFS leverages deep learning techniques to acquire domain-irrelevant features from hyperspectral data, thus effectively addressing the issue of domain shifts across datasets. The feature spaces are divided into three parts using different modules. One shared module aligns feature distributions between the source and target datasets from different years, thereby enhancing the model's generalization and robustness. Additionally, two private modules extract class-specific features and domain-specific features. The transfer mechanism does not learn domain-specific features to reduce negative transfer and improve classification accuracy. Extensive experiments conducted on a two-year dataset comprising four wheat seed varieties demonstrate the effectiveness of ADFS in wheat seed classification. Compared with three typical transfer learning networks, ADFS can achieve the best accuracy of wheat seed classification with small batch samples updated, thereby addressing new seasonal variability.
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Affiliation(s)
| | | | | | - Min Huang
- Key Laboratory of Advanced Process Control for Light Industry (Ministry of Education), School of Internet of Things Engineering, Jiangnan University, Wuxi 214122, China; (X.Z.); (S.L.); (H.Q.); (Q.Z.)
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Li X, Feng X, Fang H, Yang N, Yang G, Yu Z, Shen J, Geng W, He Y. Classification of multi-year and multi-variety pumpkin seeds using hyperspectral imaging technology and three-dimensional convolutional neural network. PLANT METHODS 2023; 19:82. [PMID: 37563698 PMCID: PMC10413611 DOI: 10.1186/s13007-023-01057-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 07/17/2023] [Indexed: 08/12/2023]
Abstract
BACKGROUND Pumpkin seeds are major oil crops with high nutritional value and high oil content. The collection and identification of different pumpkin germplasm resources play a significant role in the realization of precision breeding and variety improvement. In this research, we collected 75 species of pumpkin from the Zhejiang Province of China. 35,927 near-infrared hyperspectral images of 75 types of pumpkin seeds were used as the research object. RESULTS To realize the rapid classification of pumpkin seed varieties, position attention embedded three-dimensional convolutional neural network (PA-3DCNN) was designed based on hyperspectral image technology. The experimental results showed that PA-3DCNN had the best classification effect than other classical machine learning technology. The classification accuracy of 99.14% and 95.20% were severally reached on the training and test sets. We also demonstrated that the PA-3DCNN model performed well in next year's classification with fine-tuning and met with 94.8% accuracy. CONCLUSIONS The model performance improved by introducing double convolution and pooling structure and position attention module. Meanwhile, the generalization performance of the model was verified, which can be adopted for the classification of pumpkin seeds in multiple years. This study provided a new strategy and a feasible technical approach for identifying germplasm resources of pumpkin seeds.
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Affiliation(s)
- Xiyao Li
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Xuping Feng
- The Rural Development Academy, Zhejiang University, Hangzhou, 310058, China
| | - Hui Fang
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Ningyuan Yang
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Guofeng Yang
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Zeyu Yu
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China
| | - Jia Shen
- Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310000, China.
| | - Wei Geng
- Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310000, China.
| | - Yong He
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, 310058, China.
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Tu K, Wen S, Cheng Y, Xu Y, Pan T, Hou H, Gu R, Wang J, Wang F, Sun Q. A model for genuineness detection in genetically and phenotypically similar maize variety seeds based on hyperspectral imaging and machine learning. PLANT METHODS 2022; 18:81. [PMID: 35690826 PMCID: PMC9188178 DOI: 10.1186/s13007-022-00918-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 05/31/2022] [Indexed: 05/24/2023]
Abstract
BACKGROUND Variety genuineness and purity are essential indices of maize seed quality that affect yield. However, detection methods for variety genuineness are time-consuming, expensive, require extensive training, or destroy the seeds in the process. Here, we present an accurate, high-throughput, cost-effective, and non-destructive method for screening variety genuineness that uses seed phenotype data with machine learning to distinguish between genetically and phenotypically similar seed varieties. Specifically, we obtained image data of seed morphology and hyperspectral reflectance for Jingke 968 and nine other closely-related varieties (non-Jingke 968). We then compared the robustness of three common machine learning algorithms in distinguishing these varieties based on the phenotypic imaging data. RESULTS Our results showed that hyperspectral imaging (HSI) combined with a multilayer perceptron (MLP) or support vector machine (SVM) model could distinguish Jingke 968 from varieties that differed by as few as two loci, with a 99% or higher accuracy, while machine vision imaging provided ~ 90% accuracy. Through model validation and updating with varieties not included in the training data, we developed a genuineness detection model for Jingke 968 that effectively discriminated between genetically similar and distant varieties. CONCLUSIONS This strategy has potential for wide adoption in large-scale variety genuineness detection operations for internal quality control or governmental regulatory agencies, or for accelerating the breeding of new varieties. Besides, it could easily be extended to other target varieties and other crops.
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Affiliation(s)
- Keling Tu
- Department of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China
| | - Shaozhe Wen
- Beijing Key Laboratory of Vegetable Germplasm Improvement, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, People's Republic of China
| | - Ying Cheng
- Department of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China
| | - Yanan Xu
- Department of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China
| | - Tong Pan
- Department of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China
| | - Haonan Hou
- Department of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China
| | - Riliang Gu
- Department of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China
| | - Jianhua Wang
- Department of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China
| | - Fengge Wang
- Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, People's Republic of China.
| | - Qun Sun
- Department of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China.
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Liu W, Zeng S, Wu G, Li H, Chen F. Rice Seed Purity Identification Technology Using Hyperspectral Image with LASSO Logistic Regression Model. SENSORS (BASEL, SWITZERLAND) 2021; 21:4384. [PMID: 34206783 PMCID: PMC8271842 DOI: 10.3390/s21134384] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2021] [Revised: 06/22/2021] [Accepted: 06/24/2021] [Indexed: 11/25/2022]
Abstract
Hyperspectral technology is used to obtain spectral and spatial information of samples simultaneously and demonstrates significant potential for use in seed purity identification. However, it has certain limitations, such as high acquisition cost and massive redundant information. This study integrates the advantages of the sparse feature of the least absolute shrinkage and selection operator (LASSO) algorithm and the classification feature of the logistic regression model (LRM). We propose a hyperspectral rice seed purity identification method based on the LASSO logistic regression model (LLRM). The feasibility of using LLRM for the selection of feature wavelength bands and seed purity identification are discussed using four types of rice seeds as research objects. The results of 13 different adulteration cases revealed that the value of the regularisation parameter was different in each case. The recognition accuracy of LLRM and average recognition accuracy were 91.67-100% and 98.47%, respectively. Furthermore, the recognition accuracy of full-band LRM was 71.60-100%. However, the average recognition accuracy was merely 89.63%. These results indicate that LLRM can select the feature wavelength bands stably and improve the recognition accuracy of rice seeds, demonstrating the feasibility of developing a hyperspectral technology with LLRM for seed purity identification.
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Affiliation(s)
- Weihua Liu
- School of Electric & Electronic Engineering, Wuhan Polytechnic University, Wuhan 430023, China;
| | - Shan Zeng
- School of Mathematics & Computer Science, Wuhan Polytechnic University, Wuhan 430023, China; (H.L.); (F.C.)
| | - Guiju Wu
- The Key Laboratory of Earthquake Geodesy, Institute of Seismology, China Earthquake Administration, Wuhan 430023, China;
| | - Hao Li
- School of Mathematics & Computer Science, Wuhan Polytechnic University, Wuhan 430023, China; (H.L.); (F.C.)
| | - Feifei Chen
- School of Mathematics & Computer Science, Wuhan Polytechnic University, Wuhan 430023, China; (H.L.); (F.C.)
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