1
|
Herrera-González I, González-Cuesta M, Thépaut M, Laigre E, Goyard D, Rojo J, García Fernández JM, Fieschi F, Renaudet O, Nieto PM, Ortiz Mellet C. High-Mannose Oligosaccharide Hemimimetics that Recapitulate the Conformation and Binding Mode to Concanavalin A, DC-SIGN and Langerin. Chemistry 2024; 30:e202303041. [PMID: 37828571 DOI: 10.1002/chem.202303041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 10/12/2023] [Accepted: 10/12/2023] [Indexed: 10/14/2023]
Abstract
The "carbohydrate chemical mimicry" exhibited by sp2 -iminosugars has been utilized to develop practical syntheses for analogs of the branched high-mannose-type oligosaccharides (HMOs) Man3 and Man5 . In these compounds, the terminal nonreducing Man residues have been substituted with 5,6-oxomethylidenemannonojirimycin (OMJ) motifs. The resulting oligomannoside hemimimetic accurately reproduce the structure, configuration, and conformational behavior of the original mannooligosaccharides, as confirmed by NMR and computational techniques. Binding studies with mannose binding lectins, including concanavalin A, DC-SIGN, and langerin, by enzyme-linked lectin assay and surface plasmon resonance revealed significant variations in their ability to accommodate the OMJ unit in the mannose binding site. Intriguingly, OMJMan segments demonstrated "in line" heteromultivalent effects during binding to the three lectins. Similar to the mannobiose (Man2 ) branches in HMOs, the binding modes involving the external or internal monosaccharide unit at the carbohydrate binding-domain exist in equilibrium, facilitating sliding and recapture processes. This equilibrium, which influences the multivalent binding of HMOs, can be finely modulated upon incorporation of the OMJ sp2 -iminosugar caps. As a proof of concept, the affinity and selectivity towards DC-SIGN and langerin were adjustable by presenting the OMJMan epitope in platforms with diverse architectures and valencies.
Collapse
Affiliation(s)
- Irene Herrera-González
- Department of Organic Chemistry, Faculty of Chemistry, University of Seville, C/ Profesor García González 1, 41012, Sevilla, Spain
- Present address: DCM, UMR 5250, Université Grenoble Alpes, CNRS, 570 Rue de la Chimie, 38000, Grenoble, France
| | - Manuel González-Cuesta
- Department of Organic Chemistry, Faculty of Chemistry, University of Seville, C/ Profesor García González 1, 41012, Sevilla, Spain
| | - Michel Thépaut
- Institut de Biologie Structurale, Université Grenoble Alpes, CNRS, CEA, 38000, Grenoble, France
| | - Eugénie Laigre
- Institut de Biologie Structurale, Université Grenoble Alpes, CNRS, CEA, 38000, Grenoble, France
- DCM, UMR 5250, Université Grenoble Alpes, CNRS, 570 Rue de la Chimie, 38000, Grenoble, France
| | - David Goyard
- DCM, UMR 5250, Université Grenoble Alpes, CNRS, 570 Rue de la Chimie, 38000, Grenoble, France
| | - Javier Rojo
- Instituto de Investigaciones Químicas (IIQ), CSIC - Universidad de Sevilla, Américo Vespucio 49, 41092, Sevilla, Spain
| | - José M García Fernández
- Instituto de Investigaciones Químicas (IIQ), CSIC - Universidad de Sevilla, Américo Vespucio 49, 41092, Sevilla, Spain
| | - Franck Fieschi
- Institut de Biologie Structurale, Université Grenoble Alpes, CNRS, CEA, 38000, Grenoble, France
- Institut Universitaire de France (IUF), Paris, France
| | - Olivier Renaudet
- DCM, UMR 5250, Université Grenoble Alpes, CNRS, 570 Rue de la Chimie, 38000, Grenoble, France
| | - Pedro M Nieto
- Instituto de Investigaciones Químicas (IIQ), CSIC - Universidad de Sevilla, Américo Vespucio 49, 41092, Sevilla, Spain
| | - Carmen Ortiz Mellet
- Department of Organic Chemistry, Faculty of Chemistry, University of Seville, C/ Profesor García González 1, 41012, Sevilla, Spain
| |
Collapse
|
2
|
Ding M, Zhu Q, Lu W, Zhu S. Design and synthesis of multivalent drug delivery system with CA IX inhibitors as ligands. Bioorg Med Chem 2023; 93:117456. [PMID: 37678058 DOI: 10.1016/j.bmc.2023.117456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 08/21/2023] [Accepted: 08/21/2023] [Indexed: 09/09/2023]
Abstract
A multivalent ligand delivery system holds tremendous potential in the field of tumor-targeted drug delivery. It addresses the challenges posed by the low affinity between small molecule ligand receptors and the rapid metabolism of small molecule drug conjugates (SMDCs) in vivo. Notably, existing multivalent ligand systems have demonstrated significant anti-tumor activity in various tumor models. In this study, we have developed a novel multivalent ligand delivery system for SN38, utilizing acetazolamide, a carbonic anhydrase IX (CA IX) inhibitor, as the target ligand. Our multivalent ligand delivery systems exhibited superior metabolic stability and enhanced targeting specificity compared to SMDC molecules. Furthermore, they demonstrated improved anti-proliferation activity, addressing the existing challenges associated with the low receptor affinity and rapid metabolism of SMDCs.
Collapse
Affiliation(s)
- Mengyuan Ding
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, PR China
| | - Qiwen Zhu
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, PR China
| | - Wei Lu
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, PR China.
| | - Shulei Zhu
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, PR China.
| |
Collapse
|
3
|
Singh A, Arango JC, Shi A, d’Aliberti JB, Claridge SA. Surface-Templated Glycopolymer Nanopatterns Transferred to Hydrogels for Designed Multivalent Carbohydrate-Lectin Interactions across Length Scales. J Am Chem Soc 2023; 145:1668-1677. [PMID: 36640106 PMCID: PMC9881003 DOI: 10.1021/jacs.2c09937] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Multivalent interactions between carbohydrates and proteins enable a broad range of selective chemical processes of critical biological importance. Such interactions can extend from the macromolecular scale (1-10 nm) up to much larger scales across a cell or tissue, placing substantial demands on chemically patterned materials aiming to leverage similar interactions in vitro. Here, we show that diyne amphiphiles with carbohydrate headgroups can be assembled on highly oriented pyrolytic graphite (HOPG) to generate nanometer-resolution carbohydrate patterns, with individual linear carbohydrate assemblies up to nearly 1 μm, and microscale geometric patterns. These are then photopolymerized and covalently transferred to the surfaces of hydrogels. This strategy suspends carbohydrate patterns on a relatively rigid polydiacetylene (persistence length ∼ 16 nm), exposed at the top surface of the hydrogel above the bulk pore structure. Transferred patterns of appropriate carbohydrates (e.g., N-acetyl-d-glucosamine, GlcNAc) enable selective, multivalent interactions (KD ∼ 40 nM) with wheat germ agglutinin (WGA), a model lectin that exhibits multivalent binding with appropriately spaced GlcNAc moieties. WGA binding affinity can be further improved (KD ∼ 10 nM) using diacetylenes that shift the polymer backbone closer to the displayed carbohydrate, suggesting that this strategy can be used to modulate carbohydrate presentation at interfaces. Conversely, GlcNAc-patterned surfaces do not induce specific binding of concanavalin A, and surfaces patterned with glucuronic acid, or with simple carboxylic acid or hydroxyl groups, do not induce WGA binding. More broadly, this approach may have utility in designing synthetic glycan-mimetic interfaces with features from molecular to mesoscopic scales, including soft scaffolds for cells.
Collapse
Affiliation(s)
- Anamika Singh
- Department
of Chemistry, Purdue University, West Lafayette, Indiana47907, United States
| | - Juan C. Arango
- Department
of Chemistry, Purdue University, West Lafayette, Indiana47907, United States
| | - Anni Shi
- Department
of Chemistry, Purdue University, West Lafayette, Indiana47907, United States
| | - Joseph B. d’Aliberti
- Department
of Chemistry, Purdue University, West Lafayette, Indiana47907, United States
| | - Shelley A. Claridge
- Department
of Chemistry, Purdue University, West Lafayette, Indiana47907, United States,Weldon
School of Biomedical Engineering, Purdue
University, West Lafayette, Indiana47907, United States,. Phone: 765-494-6070
| |
Collapse
|
4
|
Dendritic maleimide-thiol adducts carrying pendant glycosides as high-affinity ligands. Bioorg Chem 2022; 128:106061. [DOI: 10.1016/j.bioorg.2022.106061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 07/14/2022] [Accepted: 07/24/2022] [Indexed: 11/19/2022]
|
5
|
Perumal S, Atchudan R, Rühl E, Graf C. Controlled Synthesis of Platinum and Silver Nanoparticles Using Multivalent Ligands. NANOMATERIALS 2022; 12:nano12132294. [PMID: 35808130 PMCID: PMC9268602 DOI: 10.3390/nano12132294] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Revised: 06/29/2022] [Accepted: 06/29/2022] [Indexed: 02/06/2023]
Abstract
Here, the controlled formation of platinum nanoparticles (PtNPs) and silver nanoparticles (AgNPs) using amine-functionalized multivalent ligands are reported. The effects of reaction temperature and ligand multivalency on the growth kinetics, size, and shape of PtNPs and AgNPs were systematically studied by performing a stepwise and a one-step process. PtNPs and AgNPs were prepared in the presence of amine ligands using platinum (II) acetylacetonate and silver (I) acetylacetonate, respectively. The effects of ligands and temperature on the formation of PtNPs were studied using a transmission electron microscope (TEM). For the characterization of AgNPs, additionally, ultraviolet-visible (UV-Vis) absorption was employed. The TEM measurements revealed that PtNPs prepared at different temperatures (160–200 °C, in a stepwise process) are monodispersed and of spherical shape regardless of the ligand multivalency or reaction temperature. In the preparation of PtNPs by the one-step process, ligands affect the shape of the PtNPs, which can be explained by the affinity of the ligands. The TEM and UV-Vis absorption studies on the formation of AgNPs with mono-, di-, and trivalent ligands showed narrower size distributions, while increasing the temperature from 80 °C to 120 °C and with a trivalent ligand in a one-step process.
Collapse
Affiliation(s)
- Suguna Perumal
- Physikalische Chemie, Institut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin, Germany;
- Department of Chemistry, Sejong University, Seoul 143747, Korea
| | - Raji Atchudan
- School of Chemical Engineering, Yeungnam University, Gyeongsan 38541, Korea;
| | - Eckart Rühl
- Physikalische Chemie, Institut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin, Germany;
- Correspondence: (E.R.); (C.G.)
| | - Christina Graf
- Physikalische Chemie, Institut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin, Germany;
- Department of Chemistry and Biotechnology, Darmstadt University of Applied Sciences, 64295 Darmstadt, Germany
- Correspondence: (E.R.); (C.G.)
| |
Collapse
|
6
|
Osswald U, Boneberg J, Wittmann V. Photoswitching Affinity and Mechanism of Multivalent Lectin Ligands. Chemistry 2022; 28:e202200267. [PMID: 35286724 PMCID: PMC9325471 DOI: 10.1002/chem.202200267] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Indexed: 11/09/2022]
Abstract
Multivalent receptor–ligand binding is a key principle in a plethora of biological recognition processes. Immense binding affinities can be achieved with the correct spatial orientation of the ligands. Accordingly, the incorporation of photoswitches, which can be used to reversibly change the spatial orientation of molecules, into multivalent ligands is a means to alter the binding affinity and possibly also the binding mode of such ligands. We report a divalent ligand for the model lectin wheat germ agglutinin (WGA) containing an arylazopyrazole photoswitch. This switch, which has recently been introduced as an alternative to the more commonly used azobenzene moiety, is characterized by almost quantitative E/Z photoswitching in both directions, high quantum yields, and high thermal stability of the Z isomer. The ligand was designed in a way that only one of the isomers is able to bridge adjacent binding sites of WGA leading to a chelating binding mode. Photoswitching induces an unprecedentedly high change in lectin binding affinity as determined by isothermal titration calorimetry (ITC). Furthermore, additional dynamic light scattering (DLS) data suggest that the binding mode of the ligand changes from chelating binding of the E isomer to crosslinking binding of the Z isomer.
Collapse
Affiliation(s)
- Uwe Osswald
- Department of ChemistryUniversity of Konstanz78457KonstanzGermany
| | | | | |
Collapse
|
7
|
Huang Y, Fu J, Zhong Y, Shuai W, Zhang H, Li Y, He Q, Tu Z. Tandem nanobody: A feasible way to improve the capacity of affinity chromatography. J Chromatogr B Analyt Technol Biomed Life Sci 2021; 1173:122678. [PMID: 33839466 DOI: 10.1016/j.jchromb.2021.122678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Revised: 03/09/2021] [Accepted: 03/20/2021] [Indexed: 11/21/2022]
Abstract
Nanobodies, referred to the binding domain of the heavy-chain-only antibodies, are the smallest antigen recognition unit. The molecular weight of monomeric nanobodies is about one-tenth of the conventional antibodies. The small size of nanobodies facilitates genetic manipulation and recombinant expression. This study aimed to investigate the effects of nanobody multivalency on the binding capacity of affinity resin. The nanobody (namely AFV), which binds to the fragment crystallizable (Fc) region of immunoglobulin G (IgG), was fused to the N-terminal of HaloTag in the form of monomeric (H-AFV), dimer (H-diAFV), trimer (H-triAFV), and tetramer (H-tetAFV). The fusion proteins were solubly expressed in Escherichia coli yielding at least 9.9 mg L-1. The biolayer interferometry confirmed an increment of avidity as the increase of AFV valences. The four recombinant proteins in crude cell lysate were site-specifically immobilized onto the Halo ligand resin via the self-labeling HaloTag, respectively. The generated affinity resins were able to isolate high purity IgG from mouse plasma. The highest improvement of the static binding capacity was achieved 73.7% by the H-diAFV resin other than the H-triAFV or H-tetAFV, as compared to the H-AFV resin.
Collapse
Affiliation(s)
- Yunxiang Huang
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China; School of Life Sciences, Nanchang University, Nanchang 330031, China; Jiangxi-OAI Joint Research Institution, Nanchang University, Nanchang 330047, China
| | - Jinheng Fu
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China; Jiangxi-OAI Joint Research Institution, Nanchang University, Nanchang 330047, China
| | - Yinfeng Zhong
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China; School of Life Sciences, Nanchang University, Nanchang 330031, China; Jiangxi-OAI Joint Research Institution, Nanchang University, Nanchang 330047, China
| | - Wenyuan Shuai
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China
| | - Hang Zhang
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China
| | - Yanping Li
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China; Jiangxi-OAI Joint Research Institution, Nanchang University, Nanchang 330047, China; Jiangxi Province Key Laboratory of Modern Analytical Sciences, Nanchang University, Nanchang 330031, China
| | - Qinghua He
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China; Jiangxi-OAI Joint Research Institution, Nanchang University, Nanchang 330047, China; Jiangxi Province Key Laboratory of Modern Analytical Sciences, Nanchang University, Nanchang 330031, China
| | - Zhui Tu
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China; Jiangxi Province Key Laboratory of Modern Analytical Sciences, Nanchang University, Nanchang 330031, China.
| |
Collapse
|
8
|
Wittmann V. Meet Our Editorial Board Member. MINI-REV ORG CHEM 2021. [DOI: 10.2174/1570193x1801210210122208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
9
|
Salta J, Arp FF, Kühne C, Reissig H. Multivalent 1,2,3‐Triazole‐Linked Carbohydrate Mimetics by Huisgen–Meldal‐Sharpless Cycloadditions of an Azidopyran. European J Org Chem 2020. [DOI: 10.1002/ejoc.202001389] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Joana Salta
- Institut für Chemie und Biochemie Freie Universität Berlin Takustrasse 3 14195 Berlin Germany
| | - Fabian F. Arp
- Institut für Chemie und Biochemie Freie Universität Berlin Takustrasse 3 14195 Berlin Germany
| | - Christian Kühne
- Institut für Laboratoriumsmedizin Klinische Chemie und Pathobiochemie Charité‐Universitätsmedizin Berlin Augustenburger Platz 1 13353 Berlin Germany
| | - Hans‐Ulrich Reissig
- Institut für Chemie und Biochemie Freie Universität Berlin Takustrasse 3 14195 Berlin Germany
| |
Collapse
|
10
|
Scherer A, Tischlik S, Weickert S, Wittmann V, Drescher M. Optimising broadband pulses for DEER depends on concentration and distance range of interest. MAGNETIC RESONANCE (GOTTINGEN, GERMANY) 2020; 1:59-74. [PMID: 37904889 PMCID: PMC10500711 DOI: 10.5194/mr-1-59-2020] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Accepted: 04/26/2020] [Indexed: 11/01/2023]
Abstract
EPR distance determination in the nanometre region has become an important tool for studying the structure and interaction of macromolecules. Arbitrary waveform generators (AWGs), which have recently become commercially available for EPR spectrometers, have the potential to increase the sensitivity of the most common technique, double electron-electron resonance (DEER, also called PELDOR), as they allow the generation of broadband pulses. There are several families of broadband pulses, which are different in general pulse shape and the parameters that define them. Here, we compare the most common broadband pulses. When broadband pulses lead to a larger modulation depth, they also increase the background decay of the DEER trace. Depending on the dipolar evolution time, this can significantly increase the noise level towards the end of the form factor and limit the potential increase in the modulation-to-noise ratio (MNR). We found asymmetric hyperbolic secant (HS{ 1 , 6 } ) pulses to perform best for short DEER traces, leading to a MNR improvement of up to 86 % compared to rectangular pulses. For longer traces we found symmetric hyperbolic secant (HS{ 1 , 1 } ) pulses to perform best; however, the increase compared to rectangular pulses goes down to 43 %.
Collapse
Affiliation(s)
- Andreas Scherer
- Department of Chemistry and Konstanz Research School Chemical Biology,
University of Konstanz, Konstanz, Germany
| | - Sonja Tischlik
- Department of Chemistry and Konstanz Research School Chemical Biology,
University of Konstanz, Konstanz, Germany
| | - Sabrina Weickert
- Department of Chemistry and Konstanz Research School Chemical Biology,
University of Konstanz, Konstanz, Germany
| | - Valentin Wittmann
- Department of Chemistry and Konstanz Research School Chemical Biology,
University of Konstanz, Konstanz, Germany
| | - Malte Drescher
- Department of Chemistry and Konstanz Research School Chemical Biology,
University of Konstanz, Konstanz, Germany
| |
Collapse
|