1
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Guo Z, Wang Y, Heitmüller J, Sieck C, Prüfer A, Ralle P, Steffen A, Henke P, Ogilby PR, Marder TB, Ma X, Brixner T. Ultrafast photophysics of para-substituted 2,5-bis(arylethynyl) rhodacyclopentadienes: thermally activated intersystem crossing. Chem Sci 2024:d4sc04306e. [PMID: 39176244 PMCID: PMC11337014 DOI: 10.1039/d4sc04306e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Accepted: 08/14/2024] [Indexed: 08/24/2024] Open
Abstract
2,5-Bis(phenylethynyl) rhodacyclopentadienes (RCPDs), as a type of Rh(iii) complex, exhibit unusually intense fluorescence and slow intersystem crossing (ISC) due to weak metal-ligand interactions. However, details on their ultrafast photophysics and ISC dynamics are limited. In this work, electronic relaxation upon photoexcitation of two substituted RCPDs with two -CO2Me (A-RC-A) or -NMe2/-CO2Me (D-RC-A) end groups are comprehensively investigated using femtosecond transient absorption spectroscopy and theoretical analysis. Upon ultraviolet and visible excitation, dephasing of vibrational coherence, charge transfer, conformation relaxation, and ISC are observed experimentally. By calculating the spin-orbit coupling, reorganization energy, and adiabatic energy gap of plausible ISC channels, semi-classical Marcus theory revealed the dominance of thermally activated ISC (S1 → T2) for both D-RC-A and A-RC-A, while S1 → T1 channels are largely blocked due to high ISC barriers. With weak spin-orbit coupling, such differences in plausible ISC channels are predominately tuned by energetic parameters. Singlet oxygen sensitization studies of A-RC-A provide additional insight into the excited-state behavior of this complex.
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Affiliation(s)
- Zilong Guo
- Institute of Molecular Plus, Tianjin University Tianjin 300072 P. R. China
| | - Yaxin Wang
- Institute of Molecular Plus, Tianjin University Tianjin 300072 P. R. China
| | - Julia Heitmüller
- Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Carolin Sieck
- Institut für Anorganische Chemie, Julius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Andreas Prüfer
- Department of Chemistry and Chemical Biology, TU Dortmund University Otto-Hahn-Str. 6 44227 Dortmund Germany
| | - Philipp Ralle
- Department of Chemistry and Chemical Biology, TU Dortmund University Otto-Hahn-Str. 6 44227 Dortmund Germany
| | - Andreas Steffen
- Department of Chemistry and Chemical Biology, TU Dortmund University Otto-Hahn-Str. 6 44227 Dortmund Germany
| | - Petr Henke
- Department of Chemistry, Aarhus University Aarhus DK-8000 Denmark
- Faculty of Science, Charles University Hlavova 2030 128 43 Prague 2 Czech Republic
| | - Peter R Ogilby
- Department of Chemistry, Aarhus University Aarhus DK-8000 Denmark
| | - Todd B Marder
- Institut für Anorganische Chemie, Julius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
- Institute for Sustainable Chemistry and Catalysis with Boron (ICB), Julius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Xiaonan Ma
- Institute of Molecular Plus, Tianjin University Tianjin 300072 P. R. China
- Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
- Institute for Sustainable Chemistry and Catalysis with Boron (ICB), Julius-Maximilians-Universität Würzburg Am Hubland 97074 Würzburg Germany
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2
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Neitz H, Bessi I, Kuper J, Kisker C, Höbartner C. Programmable DNA Interstrand Crosslinking by Alkene-Alkyne [2 + 2] Photocycloaddition. J Am Chem Soc 2023; 145:9428-9433. [PMID: 37071840 DOI: 10.1021/jacs.3c01611] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2023]
Abstract
Covalent crosslinking of DNA strands provides a useful tool for medical, biochemical, and DNA nanotechnology applications. Here we present a light-induced interstrand DNA crosslinking reaction using the modified nucleoside 5-phenylethynyl-2'-deoxyuridine (PhedU). The crosslinking ability of PhedU was programmed by base pairing and by metal ion interaction at the Watson-Crick base pairing site. Rotation to intrahelical positions was favored by hydrophobic stacking and enabled an unexpected photochemical alkene-alkyne [2 + 2] cycloaddition within the DNA duplex, resulting in efficient formation of a PhedU dimer after short irradiation times of a few seconds. A PhedU-dimer-containing DNA was shown to efficiently bind a helicase complex, but the covalent crosslink completely prevented DNA unwinding, suggesting possible applications in biochemistry or structural biology.
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Affiliation(s)
- Hermann Neitz
- Institute of Organic Chemistry, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Irene Bessi
- Institute of Organic Chemistry, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Jochen Kuper
- Rudolf-Virchow-Zentrum - Center for Integrative and Translational Bioimaging, Universität Würzburg, Josef-Schneider-Straße 2, 97080 Würzburg, Germany
| | - Caroline Kisker
- Rudolf-Virchow-Zentrum - Center for Integrative and Translational Bioimaging, Universität Würzburg, Josef-Schneider-Straße 2, 97080 Würzburg, Germany
| | - Claudia Höbartner
- Institute of Organic Chemistry, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Center for Nanosystems Chemistry (CNC), Universität Würzburg, 97074 Würzburg, Germany
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3
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Dong J, Lei Y, Hu Q, Zong L, Zhang K, Zhang Y, Hu Y. Fused diethynylbenzenes and phenanthrenes via arynes with alkynylsilanes. Org Biomol Chem 2023; 21:2715-2719. [PMID: 36722919 DOI: 10.1039/d2ob02046g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
A method for the hydroalkynylation and catalytic cyclization reactions of hexadehydro-Diels-Alder-derived benzynes is described. Diethynylbenzene derivatives are generated in a one-step reaction via trimethylsilyl-alkyne groups with benzyne formed by heating the appropriate tetrayne substrate. Trimethyl(phenylethynyl)silane loses TMS and binds to the electron-deficient site on HDDA-derived benzynes, and then phenanthrene was synthesized under mild reaction conditions by transition-metal-free, base promoted intramolecular cyclization.
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Affiliation(s)
- Jie Dong
- Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Key Laboratory of Molecular-Based Materials, School of Chemistry and Materials Science, Anhui Normal University, Wuhu, Anhui 241000, China.
| | - Yu Lei
- Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Key Laboratory of Molecular-Based Materials, School of Chemistry and Materials Science, Anhui Normal University, Wuhu, Anhui 241000, China.
| | - Qiong Hu
- Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Key Laboratory of Molecular-Based Materials, School of Chemistry and Materials Science, Anhui Normal University, Wuhu, Anhui 241000, China.
| | - Lingli Zong
- Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Key Laboratory of Molecular-Based Materials, School of Chemistry and Materials Science, Anhui Normal University, Wuhu, Anhui 241000, China.
| | - Ke Zhang
- Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Key Laboratory of Molecular-Based Materials, School of Chemistry and Materials Science, Anhui Normal University, Wuhu, Anhui 241000, China.
| | - Yajuan Zhang
- Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Key Laboratory of Molecular-Based Materials, School of Chemistry and Materials Science, Anhui Normal University, Wuhu, Anhui 241000, China.
| | - Yimin Hu
- Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Key Laboratory of Molecular-Based Materials, School of Chemistry and Materials Science, Anhui Normal University, Wuhu, Anhui 241000, China.
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4
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Kao MH, Orr-Ewing AJ. Charge-Separated Reactive Intermediates from the UV Photodissociation of Chlorobenzene in Solution. J Phys Chem A 2022; 126:6934-6943. [PMID: 36148486 PMCID: PMC9549464 DOI: 10.1021/acs.jpca.2c05327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
Although ultraviolet
(UV)-induced photochemical cleavage of carbon–halogen
bonds in gaseous halocarbons is mostly homolytic, the photolysis of
chlorobenzene in solution has been proposed to produce a phenyl cation,
c-C6H5+, which is a highly reactive
intermediate of potential use in chemical synthesis and N2 activation. Any evidence for such a route to phenyl cations is indirect,
with uncertainty remaining about the possible mechanism. Here, ultrafast
transient absorption spectroscopy of UV-excited (λ = 240 and
270 nm) chlorobenzene solutions in fluorinated (perfluorohexane) and
protic (ethanol and 2,2,2-trifluoroethanol) solvents reveals a broad
electronic absorption band centered at 540 nm that is assigned to
an isomer of chlorobenzene with both charge-separated and triplet-spin
carbene character. This spectroscopic feature is weaker, or absent,
when experiments are conducted in cyclohexane. The intermediate isomer
of chlorobenzene has a solvent-dependent lifetime of 30–110
ps, determined by reaction with the solvent or quenching to a lower-lying
singlet state. Evidence is presented for dissociation to ortho-benzyne, but the intermediate could also be a precursor to phenyl
cation formation.
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Affiliation(s)
- Min-Hsien Kao
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, United Kingdom
| | - Andrew J Orr-Ewing
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, United Kingdom
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5
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Castro‐Esteban J, Albrecht F, Fatayer S, Pérez D, Gross L, Peña D. An on‐surface Diels–Alder reaction. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202110311] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Jesús Castro‐Esteban
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) Departamento de Química Orgánica Universidade de Santiago de Compostela 15782- Santiago de Compostela Spain
| | | | | | - Dolores Pérez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) Departamento de Química Orgánica Universidade de Santiago de Compostela 15782- Santiago de Compostela Spain
| | - Leo Gross
- IBM Research—Zurich 8803 Rüschlikon Switzerland
| | - Diego Peña
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) Departamento de Química Orgánica Universidade de Santiago de Compostela 15782- Santiago de Compostela Spain
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6
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Castro‐Esteban J, Albrecht F, Fatayer S, Pérez D, Gross L, Peña D. An on-surface Diels-Alder reaction. Angew Chem Int Ed Engl 2021; 60:26346-26350. [PMID: 34664770 PMCID: PMC9298865 DOI: 10.1002/anie.202110311] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 10/10/2021] [Indexed: 11/19/2022]
Abstract
The Diels-Alder reaction is one of the most popular reactions in organic chemistry. However, its use in the field of on-surface synthesis is hampered by the spatial restrictions of this cycloaddition reaction. Herein we selected a cyclic strained triyne to demonstrate an on-surface hexadehydro-Diels-Alder reaction in a single molecule. The reaction was studied in detail by means of atomic force microscopy (AFM) with CO-functionalized tips. Our results pave the way to use this iconic pericyclic reaction for on-surface synthesis, introducing the concept of atom economy in the field.
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Affiliation(s)
- Jesús Castro‐Esteban
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS)Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782-Santiago de CompostelaSpain
| | | | | | - Dolores Pérez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS)Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782-Santiago de CompostelaSpain
| | - Leo Gross
- IBM Research—Zurich8803RüschlikonSwitzerland
| | - Diego Peña
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS)Departamento de Química OrgánicaUniversidade de Santiago de Compostela15782-Santiago de CompostelaSpain
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7
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Maier J, Marder TB. Mechanistic and Kinetic Factors of ortho-Benzyne Formation in Hexadehydro-Diels-Alder (HDDA) Reactions. Chemistry 2021; 27:7978-7991. [PMID: 33783896 PMCID: PMC8251977 DOI: 10.1002/chem.202100608] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Indexed: 11/07/2022]
Abstract
With the rapid development of the hexadehydro-Diels-Alder reaction (HDDA) from its first discovery in 1997, the question of whether a concerted or stepwise mechanism better describes the thermally activated formation of ortho-benzyne from a diyne and a diynophile has been debated. Mechanistic and kinetic investigations were able to show that this is not a black or white situation, as minor changes can tip the balance. For that reason, especially, linked yne-diynes were studied to examine steric, electronic, and radical-stabilizing effects of their terminal substituents on the reaction mechanism and kinetics. Furthermore, the influence of the nature of the linker on the HDDA reaction was explored. The more recently discovered photochemical HDDA reaction also gives ortho-arynes, which display the same reactivity as the thermally generated ones, but their formation might not proceed by the same mechanism. This minireview summarizes the current state of mechanistic understanding of the HDDA reaction.
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Affiliation(s)
- Jan Maier
- Institut für Anorganische Chemie and, Institute for Sustainable Chemistry & Catalysis with Boron (ICB), Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Todd B Marder
- Institut für Anorganische Chemie and, Institute for Sustainable Chemistry & Catalysis with Boron (ICB), Julius-Maximilians-Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
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8
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Fluegel LL, Hoye TR. Hexadehydro-Diels-Alder Reaction: Benzyne Generation via Cycloisomerization of Tethered Triynes. Chem Rev 2021; 121:2413-2444. [PMID: 33492939 PMCID: PMC8008985 DOI: 10.1021/acs.chemrev.0c00825] [Citation(s) in RCA: 94] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The hexadehydro-Diels-Alder (HDDA) reaction is the thermal cyclization of an alkyne and a 1,3-diyne to generate a benzyne intermediate. This is then rapidly trapped, in situ, by a variety of species to yield highly functionalized benzenoid products. In contrast to nearly all other methods of aryne generation, no other reagents are required to produce an HDDA benzyne. The versatile and customizable nature of the process has attracted much attention due not only to its synthetic potential but also because of the fundamental mechanistic insights the studies often afford. The authors have attempted to provide here a comprehensive compilation of publications appearing by mid-2020 that describe experimental results of HDDA reactions.
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Affiliation(s)
- Lucas L Fluegel
- Department of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
| | - Thomas R Hoye
- Department of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
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9
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Kakkar A. Celebrating Todd Marder: 65th Birthday and His Contributions to Inorganic Chemistry. Molecules 2021; 26:776. [PMID: 33546127 PMCID: PMC7913161 DOI: 10.3390/molecules26040776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 02/01/2021] [Indexed: 11/17/2022] Open
Abstract
Professor Todd B [...].
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Affiliation(s)
- Ashok Kakkar
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal, QC H3A 0B8, Canada
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10
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Maier J, Deutsch M, Merz J, Ye Q, Diamond O, Schilling M, Friedrich A, Engels B, Marder TB. Highly Conjugated π-Systems Arising from Cannibalistic Hexadehydro-Diels-Alder Couplings: Cleavage of C-C Single and Triple Bonds. Chemistry 2020; 26:15989-16000. [PMID: 32619049 PMCID: PMC7756338 DOI: 10.1002/chem.202002511] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Indexed: 11/30/2022]
Abstract
We have investigated the cannibalistic self-trapping reaction of an ortho-benzyne derivative generated from 1,11-bis(p-tolyl)undeca-1,3,8,10-tetrayne in an HDDA reaction. Without adding any specific trapping agent, the highly reactive benzyne is trapped by another bisdiyne molecule in at least three different modes. We have isolated and characterized the resulting products and performed high-level calculations concerning the reaction mechanism. During the cannibalistic self-trapping process, either a C≡C triple bond or an sp-sp3 C-C single bond is cleaved. Up to seven rings and nine C-C bonds are formed starting from two 1,11-bis(p-tolyl)undeca-1,3,8,10-tetrayne molecules. Our experiments and calculations provide considerable insight into the variety of reaction pathways which the ortho-benzyne derivative, generated from a bisdiyne, can take when reacting with another bisdiyne molecule.
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Affiliation(s)
- Jan Maier
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry &, Catalysis with Boron (ICB)Julius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Marian Deutsch
- Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität WürzburgEmil-Fischer-Straße 4297074WürzburgGermany
| | - Julia Merz
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry &, Catalysis with Boron (ICB)Julius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Qing Ye
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry &, Catalysis with Boron (ICB)Julius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
- Southern University of Science and TechnologyNo 1088, Xueyuan Rd.Xili, Nanshan DistrictShenzhen, GuangdongP. R. China
| | - Oliver Diamond
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry &, Catalysis with Boron (ICB)Julius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Maja‐Tessa Schilling
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry &, Catalysis with Boron (ICB)Julius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Alexandra Friedrich
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry &, Catalysis with Boron (ICB)Julius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Bernd Engels
- Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität WürzburgEmil-Fischer-Straße 4297074WürzburgGermany
| | - Todd B. Marder
- Institut für Anorganische Chemie and Institute for Sustainable Chemistry &, Catalysis with Boron (ICB)Julius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
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