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Li K, Li Z, Yuan J, Chen M, Zhao H, Jiang Z, Wang J, Jiang Z, Li Y, Chan YT, Wang P, Liu D. High-order layered self-assembled multicavity metal--organic capsules and anti-cooperative host-multi-guest chemistry. Chem Sci 2024; 15:8913-8921. [PMID: 38873050 PMCID: PMC11168090 DOI: 10.1039/d4sc01204f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Accepted: 05/07/2024] [Indexed: 06/15/2024] Open
Abstract
The construction and application of metal-organic cages with accessible internal cavities have witnessed rapid development, however, the precise synthesis of complex metal-organic capsules with multiple cavities and achievement of multi-guest encapsulation, and further in-depth comprehension of host-multi-guest recognition remain a great challenge. Just like building LEGO blocks, herein, we have constructed a series of high-order layered metal-organic architectures of generation n (n = 1/2/3/4 is also the number of cavities) by multi-component coordination-driven self-assembly using porphyrin-containing tetrapodal ligands (like plates), multiple parallel-podal ligands (like clamps) and metal ions (like nodes). Importantly, these high-order assembled structures possessed different numbers of rigid and separate cavities formed by overlapped porphyrin planes with specific gaps. The host-guest experiments and convincing characterization proved that these capsules G2-G4 could serve as host structures to achieve multi-guest recognition and unprecedentedly encapsulate up to four C60 molecules. More interestingly, these capsules revealed negative cooperation behavior in the process of multi-guest recognition, which provides a new platform to further study complicated host-multi-guest interaction in the field of supramolecular chemistry.
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Affiliation(s)
- Kaixiu Li
- Department of Organic and Polymer Chemistry, Hunan Key Laboratory of Micro & Nano Materials Interface Science, College of Chemistry and Chemical Engineering, Central South University Changsha Hunan-410083 China
| | - Zhengguang Li
- Department of Organic and Polymer Chemistry, Hunan Key Laboratory of Micro & Nano Materials Interface Science, College of Chemistry and Chemical Engineering, Central South University Changsha Hunan-410083 China
| | - Jie Yuan
- School of Chemistry and Chemical Engineering, Henan Normal University Xinxiang Henan 453007 China
| | - Mingzhao Chen
- Department Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou Key Laboratory for Clean Energy and Materials, Guangzhou University Guangzhou-510006 China
| | - He Zhao
- Department of Organic and Polymer Chemistry, Hunan Key Laboratory of Micro & Nano Materials Interface Science, College of Chemistry and Chemical Engineering, Central South University Changsha Hunan-410083 China
| | - Zhiyuan Jiang
- Department of Organic and Polymer Chemistry, Hunan Key Laboratory of Micro & Nano Materials Interface Science, College of Chemistry and Chemical Engineering, Central South University Changsha Hunan-410083 China
| | - Jun Wang
- Department Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou Key Laboratory for Clean Energy and Materials, Guangzhou University Guangzhou-510006 China
| | - Zhilong Jiang
- Department Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou Key Laboratory for Clean Energy and Materials, Guangzhou University Guangzhou-510006 China
| | - Yiming Li
- Department of Organic and Polymer Chemistry, Hunan Key Laboratory of Micro & Nano Materials Interface Science, College of Chemistry and Chemical Engineering, Central South University Changsha Hunan-410083 China
| | - Yi-Tsu Chan
- Department of Chemistry, National Taiwan University Taipei 10617 Taiwan
| | - Pingshan Wang
- Department of Organic and Polymer Chemistry, Hunan Key Laboratory of Micro & Nano Materials Interface Science, College of Chemistry and Chemical Engineering, Central South University Changsha Hunan-410083 China
- Department Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou Key Laboratory for Clean Energy and Materials, Guangzhou University Guangzhou-510006 China
| | - Die Liu
- Department of Organic and Polymer Chemistry, Hunan Key Laboratory of Micro & Nano Materials Interface Science, College of Chemistry and Chemical Engineering, Central South University Changsha Hunan-410083 China
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2
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Sarwa A, Białońska A, Sobieraj M, Martínez JP, Trzaskowski B, Szyszko B. Iminopyrrole-Based Self-Assembly: A Route to Intrinsically Flexible Molecular Links and Knots. Angew Chem Int Ed Engl 2024; 63:e202316489. [PMID: 38032333 DOI: 10.1002/anie.202316489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 11/29/2023] [Accepted: 11/30/2023] [Indexed: 12/01/2023]
Abstract
The use of 2,5-diformylpyrrole in self-assembly reactions with diamines and Zn(II)/Cd(II) salts allowed the preparation of [2]catenane, trefoil knot, and Borromean rings. The intrinsically dynamic nature of the diiminopyrrole motif rendered all of the formed assemblies intramolecularly flexible. The presence of diiminopyrrole revealed new coordination motifs and influenced the host-guest chemistry of the systems, as illustrated by hexafluorophosphate encapsulation by Borromean rings.
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Affiliation(s)
- Aleksandra Sarwa
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-387, Wrocław, Poland
| | - Agata Białońska
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-387, Wrocław, Poland
| | - Michał Sobieraj
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-387, Wrocław, Poland
| | - Juan Pablo Martínez
- Centre of New Technologies, University of Warsaw, 2c Banach St., 02-097, Warsaw, Poland
| | - Bartosz Trzaskowski
- Centre of New Technologies, University of Warsaw, 2c Banach St., 02-097, Warsaw, Poland
| | - Bartosz Szyszko
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-387, Wrocław, Poland
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3
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Li Z, Zhang J, Li G, Puddephatt RJ. Self-assembly of the smallest and tightest molecular trefoil knot. Nat Commun 2024; 15:154. [PMID: 38168068 PMCID: PMC10762025 DOI: 10.1038/s41467-023-44302-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 12/07/2023] [Indexed: 01/05/2024] Open
Abstract
Molecular knots, whose synthesis presents many challenges, can play important roles in protein structure and function as well as in useful molecular materials, whose properties depend on the size of the knotted structure. Here we report the synthesis by self-assembly of molecular trefoil metallaknot with formula [Au6{1,2-C6H4(OCH2CC)2}3{Ph2P(CH2)4PPh2}3], Au6, from three units of each of the components 1,2-C6H4(OCH2CCAu)2 and Ph2P(CH2)4PPh2. Structure determination by X-ray diffraction revealed that the chiral trefoil knot contains only 54 atoms in the backbone, so that Au6 is the smallest and tightest molecular trefoil knot known to date.
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Affiliation(s)
- Zhiwen Li
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jingjing Zhang
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Gao Li
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Richard J Puddephatt
- Department of Chemistry, University of Western Ontario, London, N6A 5B7, Canada.
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5
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Lynes AD, Lovitt JI, Rotella C, Boland JJ, Gunnlaugsson T, Hawes CS. Crystal engineering studies of a series of pyridine-3,5-dicarboxamide ligands possessing alkyl ester arms, and their coordination chemistry. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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6
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Walker CC, Fobe TL, Shirts MR. How Cooperatively Folding Are Homopolymer Molecular Knots? Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c00881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Christopher C. Walker
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80303 United States
| | - Theodore L. Fobe
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80303 United States
| | - Michael R. Shirts
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, Colorado 80303 United States
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7
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Ashbridge Z, Fielden SDP, Leigh DA, Pirvu L, Schaufelberger F, Zhang L. Knotting matters: orderly molecular entanglements. Chem Soc Rev 2022; 51:7779-7809. [PMID: 35979715 PMCID: PMC9486172 DOI: 10.1039/d2cs00323f] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2022] [Indexed: 11/29/2022]
Abstract
Entangling strands in a well-ordered manner can produce useful effects, from shoelaces and fishing nets to brown paper packages tied up with strings. At the nanoscale, non-crystalline polymer chains of sufficient length and flexibility randomly form tangled mixtures containing open knots of different sizes, shapes and complexity. However, discrete molecular knots of precise topology can also be obtained by controlling the number, sequence and stereochemistry of strand crossings: orderly molecular entanglements. During the last decade, substantial progress in the nascent field of molecular nanotopology has been made, with general synthetic strategies and new knotting motifs introduced, along with insights into the properties and functions of ordered tangle sequences. Conformational restrictions imparted by knotting can induce allostery, strong and selective anion binding, catalytic activity, lead to effective chiral expression across length scales, binding modes in conformations efficacious for drug delivery, and facilitate mechanical function at the molecular level. As complex molecular topologies become increasingly synthetically accessible they have the potential to play a significant role in molecular and materials design strategies. We highlight particular examples of molecular knots to illustrate why these are a few of our favourite things.
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Affiliation(s)
- Zoe Ashbridge
- Department of Chemistry, The University of Manchester, Manchester, UK
| | | | - David A Leigh
- Department of Chemistry, The University of Manchester, Manchester, UK
- School of Chemistry and Molecular Engineering, East China Normal University, 3663 N Zhongshan Road, Shanghai, China
| | - Lucian Pirvu
- Department of Chemistry, The University of Manchester, Manchester, UK
| | | | - Liang Zhang
- Department of Chemistry, The University of Manchester, Manchester, UK
- School of Chemistry and Molecular Engineering, East China Normal University, 3663 N Zhongshan Road, Shanghai, China
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8
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Ashbridge Z, Knapp OM, Kreidt E, Leigh DA, Pirvu L, Schaufelberger F. Social Self-Sorting Synthesis of Molecular Knots. J Am Chem Soc 2022; 144:17232-17240. [PMID: 36067448 PMCID: PMC9501921 DOI: 10.1021/jacs.2c07682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
We report the synthesis of molecular prime and composite
knots
by social self-sorting of 2,6-pyridinedicarboxamide (pdc) ligands
of differing topicity and stereochemistry. Upon mixing achiral monotopic
and ditopic pdc-ligand strands in a 1:1:1 ratio with Lu(III), a well-defined
heteromeric complex featuring one of each ligand strand and the metal
ion is selectively formed. Introducing point-chiral centers into the
ligands leads to single-sense helical stereochemistry of the resulting
coordination complex. Covalent capture of the entangled structure
by ring-closing olefin metathesis then gives a socially self-sorted
trefoil knot of single topological handedness. In a related manner,
a heteromeric molecular granny knot (a six-crossing composite knot
featuring two trefoil tangles of the same handedness) was assembled
from social self-sorting of ditopic and tetratopic multi-pdc strands.
A molecular square knot (a six-crossing composite knot of two trefoil
tangles of opposite handedness) was assembled by social self-sorting
of a ditopic pdc strand with four (S)-centers and
a tetratopic strand with two (S)- and six (R)-centers. Each of the entangled structures was characterized
by 1H and 13C NMR spectroscopy, mass spectrometry,
and circular dichroism spectroscopy. The precise control of composition
and topological chirality through social self-sorting enables the
rapid assembly of well-defined sequences of entanglements for molecular
knots.
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Affiliation(s)
- Zoe Ashbridge
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K
| | - Olivia M Knapp
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K
| | - Elisabeth Kreidt
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K
| | - David A Leigh
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K.,School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Lucian Pirvu
- Department of Chemistry, University of Manchester, Manchester M13 9PL, U.K
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9
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Ashbridge Z, Kreidt E, Pirvu L, Schaufelberger F, Stenlid JH, Abild-Pedersen F, Leigh DA. Vernier template synthesis of molecular knots. Science 2022; 375:1035-1041. [PMID: 35239374 DOI: 10.1126/science.abm9247] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Molecular knots are often prepared using metal helicates to cross the strands. We found that coordinatively mismatching oligodentate ligands and metal ions provides a more effective way to synthesize larger knots using Vernier templating. Strands composed of different numbers of tridentate 2,6-pyridinedicarboxamide groups fold around nine-coordinate lanthanide (III) ions to generate strand-entangled complexes with the lowest common multiple of coordination sites for the ligand strands and metal ions. Ring-closing olefin metathesis then completes the knots. A 3:2 (ditopic strand:metal) Vernier assembly produces +31#+31 and -31#-31 granny knots. Vernier complexes of 3:4 (tetratopic strand:metal) stoichiometry selectively form a 378-atom-long trefoil-of-trefoils triskelion knot with 12 alternating strand crossings or, by using opposing stereochemistry at the terminus of the strand, an inverted-core triskelion knot with six alternating and six nonalternating strand crossings.
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Affiliation(s)
- Zoe Ashbridge
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - Elisabeth Kreidt
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - Lucian Pirvu
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | | | - Joakim Halldin Stenlid
- SUNCAT Center for Interface Science and Catalysis, Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA.,SUNCAT Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - Frank Abild-Pedersen
- SUNCAT Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA
| | - David A Leigh
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, UK.,School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
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10
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Affiliation(s)
- Arthur H. G. David
- Department of Chemistry Northwestern University Evanston Illinois 60208 United States
| | - J. Fraser Stoddart
- Department of Chemistry Northwestern University Evanston Illinois 60208 United States
- School of Chemistry University of New South Wales Sydney NSW 2052 Australia
- Stoddart Institute of Molecular Science Department of Chemistry Zhejiang University Hangzhou 310021 China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center Hangzhou 311215 China
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11
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Schröder HV, Zhang Y, Link AJ. Dynamic covalent self-assembly of mechanically interlocked molecules solely made from peptides. Nat Chem 2021; 13:850-857. [PMID: 34426684 PMCID: PMC8446321 DOI: 10.1038/s41557-021-00770-7] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 07/12/2021] [Indexed: 11/09/2022]
Abstract
Mechanically interlocked molecules (MIMs), such as rotaxanes and catenanes, have captured the attention of chemists both from a synthetic perspective and because of their role as simple prototypes of molecular machines. Although examples exist in nature, most synthetic MIMs are made from artificial building blocks and assembled in organic solvents. Synthesis of MIMs from natural biomolecules remains highly challenging. Here we report on a synthesis strategy for interlocked molecules solely made from peptides—mechanically interlocked peptides (MIPs). Fully peptidic, cysteine-decorated building blocks were self-assembled in water to generate disulfide-bonded dynamic combinatorial libraries consisting of multiple different rotaxanes, catenanes and daisy chains as well as more exotic structures. Detailed NMR spectroscopy and mass spectrometry characterization of a [2]catenane comprised of two peptide macrocycles revealed that this structure has rich conformational dynamics reminiscent of protein folding. Thus, MIPs can serve as a bridge between fully synthetic MIMs and those found in nature.
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Affiliation(s)
- Hendrik V Schröder
- Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA
| | - Yi Zhang
- Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA
| | - A James Link
- Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA. .,Department of Chemistry, Princeton University, Princeton, NJ, USA. .,Department of Molecular Biology, Princeton University, Princeton, NJ, USA.
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