Molecular recognition mechanisms directing the self-assembly of biological structures

Molecular recognition at interfaces. Adhesion, wetting and bond scrambling

The quantitative description of the supramolecular interaction occurring at the adhesion surfaces of different polymers has enabled elaborate dissections of contributions to cohesive and surface energies. An alternative analysis is proposed here based on solubility parameters and binding constants that traditionally describe the weakest and relatively larger association energies in polymer blends. The article emphasizes a feature of supramolecular polymers that has not received adequate consideration: The dynamic bond scrambling that allows a most efficient molecular recognition over significant areas of synthetic and biological surfaces.

Critical issues in molecular recognition: the enzyme-substrate association

Chemical and shape recognition are the main assembling mechanisms of complex bio-structures. A refined assessment of relevant thermodynamic parameters includes the consideration of a variety of contributions from different molecular motions and electronic interactions. An additional refinement includes the analysis of recognition involving multiple distant partners. This perspective note highlights some of the above issues in the cases of fibrillogenesis, and enzyme-substrate and antigen-antibody associations. Translational motions are found to be particularly relevant to the fibrillogenesis process. The assembly of enzyme-substrate complexes is discussed in terms of a dynamic equilibrium process.