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Yang Y, Zhang N, Jiang W. Functional DNA-Zn 2+ coordination nanospheres for sensitive imaging of 8-oxyguanine DNA glycosylase activity in living cells. Talanta 2024; 280:126779. [PMID: 39217713 DOI: 10.1016/j.talanta.2024.126779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Revised: 08/15/2024] [Accepted: 08/24/2024] [Indexed: 09/04/2024]
Abstract
Sensitive monitoring of human 8-oxyguanine DNA glycosylase (hOGG1) activity in living cells is helpful to understand its function in damage repair and evaluate its role in disease diagnosis. Herein, a functional DNA-Zn2+ coordination nanospheres was proposed for sensitive imaging of hOGG1 in living cells. The nanospheres were constructed through the coordination-driven self-assembly of the entropy driven reaction (EDR) -deoxyribozyme (DNAzyme) system with Zn2+, where DNAzyme was designed to split structure and assembled into the EDR system. When the nanospheres entered the cell, the competitive coordination between phosphate in the cell and Zn2+ leaded to the disintegration of the nanospheres, releasing DNA and some Zn2+. The released Zn2+ acted as a cofactor of DNAzyme. In the presence of hOGG1, the EDR was completed, accompanied by fluorescence recovery and the generation of a complete DNAzyme. With the assistance of Zn2+, DNAzyme continuously cleaved substrates to produce plenty of fluorescence signals, thus achieving sensitive imaging of hOGG1 activity. The nanospheres successfully achieved sensitive imaging of hOGG1 in human cervical cancer cells (HeLa), human non-small cell lung cancer cells and human normal colonic epithelial cells, and assayed changes in hOGG1 activity in HeLa cells. This nanospheres may provide a new tool for intracellular hOGG1 imaging and related biomedical studies.
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Affiliation(s)
- Yayun Yang
- School of Chemistry and Chemical Engineering, Shandong University, 250100, Jinan, PR China
| | - Nan Zhang
- Research Center of Basic Medicine, Breast Center, Central Hospital Affiliated to Shandong First Medical University, 250013, Jinan, PR China.
| | - Wei Jiang
- School of Chemistry and Chemical Engineering, Shandong University, 250100, Jinan, PR China.
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2
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Liu ST, Chen JS, Liu XP, Mao CJ, Jin BK. A photoelectrochemical biosensor based on b-TiO 2/CdS:Eu/Ti 3C 2 heterojunction for the ultrasensitive detection of miRNA-21. Talanta 2023; 253:123601. [PMID: 36126520 DOI: 10.1016/j.talanta.2022.123601] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 01/26/2022] [Accepted: 05/25/2022] [Indexed: 12/13/2022]
Abstract
A novel photoelectrochemical (PEC) biosensor based on b-TiO2/CdS:Eu/Ti3C2 heterojunction was developed for ultrasensitive determination of miRNA-21. In this device, the b-TiO2/CdS:Eu/Ti3C2 heterojunction with excellent energy level arrangement effectively facilitated photoelectric conversion efficiency and accelerated the separation of the photogenerated electron hole pairs, which because that the structure of heterojunction overcomes the drawbacks of single material, such as narrow light absorption range, wide band gap, short carrier lifetime, etc., improves light utilization, extends the lifetime of photogenerated electron hole pairs, and promotes electron transfer. Herein, hairpin DNA1 (H1) decorated on the b-TiO2/CdS:Eu/Ti3C2 electrode surface by Cd-S bonds, after H2/miRNA-21 heterduplex was introduced, the strand-displacement reaction (SDR) was triggered between H1 and H2/miRNA-21, accordingly, miRNA-21 was discharged from the H2/miRNA-21 heterduplex, forming the H1/H2 duplex, and the reuse of miRNA-21 was realized. As a signal amplification factor, the signal amplification factor H3-CdSe was hybridized with H1/H2 duplex, which greatly enhanced the sensitivity of the PEC biosensor. Under optimal conditions, the designed PEC biosensor displayed outstanding sensitivity, selectivity and stability with a wide liner range from 1.0 μM to 10.0 fM and a low detection limit of 3.3 fM. The preparation of the optoelectronic material affords a new direction for the progress of heterojunction photovoltaic materials and the construction of the proposed biosensor also provides a new thought for the PEC detection of human miRNA-21 with superior performance. Simultaneously, the established biosensor exhibiting tremendous possibility for detecting other biomarkers and biomolecules in clinical diagnosis fields.
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Affiliation(s)
- Shen-Ting Liu
- Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Ministry of Education), Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials of Anhui Province, Key Laboratory of Functional Inorganic Materials of Anhui Province, School of Chemistry & Chemical Engineering, Anhui University, Hefei, 230601, PR China
| | - Jing-Shuai Chen
- Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Ministry of Education), Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials of Anhui Province, Key Laboratory of Functional Inorganic Materials of Anhui Province, School of Chemistry & Chemical Engineering, Anhui University, Hefei, 230601, PR China
| | - Xing-Pei Liu
- Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Ministry of Education), Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials of Anhui Province, Key Laboratory of Functional Inorganic Materials of Anhui Province, School of Chemistry & Chemical Engineering, Anhui University, Hefei, 230601, PR China.
| | - Chang-Jie Mao
- Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Ministry of Education), Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials of Anhui Province, Key Laboratory of Functional Inorganic Materials of Anhui Province, School of Chemistry & Chemical Engineering, Anhui University, Hefei, 230601, PR China.
| | - Bao-Kang Jin
- Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Ministry of Education), Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials of Anhui Province, Key Laboratory of Functional Inorganic Materials of Anhui Province, School of Chemistry & Chemical Engineering, Anhui University, Hefei, 230601, PR China
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3
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Zhan J, Liu Z, Liu R, Zhu JJ, Zhang J. Near-Infrared-Light-Mediated DNA-Logic Nanomachine for Bioorthogonal Cascade Imaging of Endogenous Interconnected MicroRNAs and Metal Ions. Anal Chem 2022; 94:16622-16631. [DOI: 10.1021/acs.analchem.2c02577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Jiayin Zhan
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Zheng Liu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Ran Liu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jun-Jie Zhu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jingjing Zhang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing 210023, China
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Han Q, Zhang X, Jia Y, Guo S, Zhu J, Luo S, Na N, Ouyang J. Synthesis and Characteristics of Self‐Assembled Multifunctional Ln
3+
‐DNA Hybrid Coordination Polymers. Chemistry 2022; 28:e202200281. [DOI: 10.1002/chem.202200281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Indexed: 11/05/2022]
Affiliation(s)
- Qingzhi Han
- Key Laboratory of Theoretical and Computational Photochemistry College of Chemistry Beijing Normal University Beijing 100875 China
| | - Xinlian Zhang
- Key Laboratory of Theoretical and Computational Photochemistry College of Chemistry Beijing Normal University Beijing 100875 China
| | - Yijing Jia
- Key Laboratory of Theoretical and Computational Photochemistry College of Chemistry Beijing Normal University Beijing 100875 China
| | - Shaoshi Guo
- Key Laboratory of Theoretical and Computational Photochemistry College of Chemistry Beijing Normal University Beijing 100875 China
| | - Jiale Zhu
- Key Laboratory of Theoretical and Computational Photochemistry College of Chemistry Beijing Normal University Beijing 100875 China
| | - Shirui Luo
- Key Laboratory of Theoretical and Computational Photochemistry College of Chemistry Beijing Normal University Beijing 100875 China
| | - Na Na
- Key Laboratory of Theoretical and Computational Photochemistry College of Chemistry Beijing Normal University Beijing 100875 China
| | - Jin Ouyang
- Key Laboratory of Theoretical and Computational Photochemistry College of Chemistry Beijing Normal University Beijing 100875 China
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Xu M, Peng Y, Yang H, Zhou Y. Highly sensitive biosensor based on aptamer and hybridization chain reaction for detection of cadmium ions. LUMINESCENCE 2022; 37:665-671. [PMID: 35146864 DOI: 10.1002/bio.4207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 01/30/2022] [Accepted: 02/06/2022] [Indexed: 11/11/2022]
Abstract
In this work, a highly sensitive biosensor for detecting cadmium ions (Cd2+ ) was developed based on Cd2+ -specific DNA aptamer and hybridization chain reaction (HCR). The Cd2+ -aptamer (named S0) was used to recognize Cd2+ and trigger HCR reaction. Without Cd2+ , S0 initiated the HCR to form long nicked dsDNA structures to quench the fluorescence. Then, Cd2+ can bind with S0 to block HCR to recover fluorescence. This biosensor had high sensitivity with the detection limit of 0.36 nM and a linear range from 0 to 10 nM. Moreover, it showed a satisfactory selectivity and recovery rates.
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Affiliation(s)
- Mingming Xu
- College of Life Science, Yangtze University, 266 Jingmi Road, Jingzhou, Hubei, China
| | - Yu Peng
- College of Life Science, Yangtze University, 266 Jingmi Road, Jingzhou, Hubei, China
| | - Hualin Yang
- College of Life Science, Yangtze University, 266 Jingmi Road, Jingzhou, Hubei, China.,State Environmental Protection Key Laboratory of Synergetic Control and Joint Remediation for Soil &Water Pollution, Chengdu University of Technology, Chengdu, Sichuan, China
| | - Yu Zhou
- College of Life Science, Yangtze University, 266 Jingmi Road, Jingzhou, Hubei, China.,College of Animal Science, Yangtze University, 266 Jingmi Road, Jingzhou, Hubei, China
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Wang ZY, Meng YR, Hu J, Qiu JG, Zhang CY. Development of a single-molecule biosensor with ultra-low background for simultaneous detection of multiple retroviral DNAs. J Mater Chem B 2022; 10:5465-5472. [DOI: 10.1039/d2tb00969b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Human T-cell lymphotropic virus type I and type II (HTLV-I and HTLV-II) are two most prevalent subtypes of HTLVs, and they usually infect individuals asymptomatically and may induce various diseases....
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